View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18588_low_1 (Length: 649)

Name: NF18588_low_1
Description: NF18588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18588_low_1
NF18588_low_1
[»] chr8 (1 HSPs)
chr8 (17-633)||(29157073-29157690)
[»] chr2 (11 HSPs)
chr2 (286-631)||(2596034-2596380)
chr2 (286-631)||(2581345-2581691)
chr2 (313-631)||(2588959-2589278)
chr2 (128-245)||(2583668-2583785)
chr2 (499-631)||(2576909-2577041)
chr2 (72-201)||(2596498-2596628)
chr2 (221-290)||(2596431-2596500)
chr2 (182-243)||(2584987-2585051)
chr2 (236-290)||(2581743-2581797)
chr2 (370-415)||(2584824-2584869)
chr2 (589-634)||(14514924-14514969)
[»] chr3 (3 HSPs)
chr3 (338-633)||(21642431-21642727)
chr3 (342-633)||(21620765-21621057)
chr3 (578-634)||(3625758-3625814)
[»] chr6 (4 HSPs)
chr6 (310-633)||(30399148-30399472)
chr6 (589-634)||(6921351-6921396)
chr6 (589-634)||(6947881-6947926)
chr6 (589-634)||(20770674-20770719)
[»] chr7 (10 HSPs)
chr7 (327-629)||(46769400-46769703)
chr7 (72-254)||(46769773-46769964)
chr7 (487-634)||(36260277-36260424)
chr7 (587-634)||(19604462-19604509)
chr7 (584-634)||(29106838-29106888)
chr7 (589-634)||(660848-660893)
chr7 (589-634)||(20352119-20352164)
chr7 (370-471)||(36260477-36260578)
chr7 (578-634)||(18997588-18997644)
chr7 (578-634)||(36255390-36255446)
[»] chr4 (5 HSPs)
chr4 (370-546)||(35767130-35767307)
chr4 (589-634)||(53774864-53774909)
chr4 (487-634)||(19359161-19359308)
chr4 (370-415)||(19359417-19359462)
chr4 (593-634)||(35767042-35767083)
[»] chr5 (1 HSPs)
chr5 (586-634)||(24330897-24330945)
[»] chr1 (1 HSPs)
chr1 (586-634)||(21855381-21855429)


Alignment Details
Target: chr8 (Bit Score: 570; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 570; E-Value: 0
Query Start/End: Original strand, 17 - 633
Target Start/End: Complemental strand, 29157690 - 29157073
Alignment:
Q  17 tcaactaagaagaataggctttccatagacatatacccatgacatgacacaaaccacaattacataaaagaaacaaggaaaaactgaaagttgaatggtt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29157690 tcaactaagaagaataggctttccatagacatatacccatgacatgaaacaaaccacaattacataaaagaaacaaggaaaaactgaaagttgaatggtt 29157591  T
Q  117 gaattggatgaaaaattagaagagagatggcatgtaaagaaatgaataaggaaaaggactaaaatgcataaatgtattagtgacattcacatggttccaa 216  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29157590 gaattggatgaaaaattaaaagagagatggcatgtaaagaaatgaataaggaaaaggactaaaatgcataaatgtattagtgacattcacatggttccaa 29157491  T
Q  217 acaaacagaagagttataaaacaaaacaattattaaattgtgagttgcttccaatgtccccgaaaaaacctaaagctattgcagcaccaaaagcctcctt 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||| ||    
T  29157490 acaaacagaagagttataaaacaaaacaattattaaattgtgagttgcttccaatgtccccgaagaaacctaaagctattgcagcaccaaaaagctcatt 29157391  T
Q  317 tcttcctttcctccaaccatcccacaaatgtcttgacgtgctttctaaatgatagaaaccaagctttcaacaaaaaccttggcagagaaccattgtattg 416  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29157390 tcttcctttcctccaatcatcccacaaatgtcttgacgtgctttctaaatgatagaaaccaagctttcaacaaaaaccttggcagagaaccattgtattg 29157291  T
Q  417 gatcgatagttctagtccgctttgctgtattatccctcaaattatatagaattgcccgttgtt-ttgattattagccaatattagtgtatcgttgtgatc 515  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  29157290 gatcgataattctagtcctctttgctgtattatccctcaaattatatagaattgcccgttgttcttgattattagccaatattagtgtatcgttgtgatc 29157191  T
Q  516 agaaaggtgcaatggcaacaattgacaatttttcaagtctgcaaaatcatgaaatctagttcgaagagtttggtaactaattttaaggagttgagtccat 615  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29157190 agaaaggtgcaatggcaacaattgacaatttttcaagtcagcaaaatcatgaaatctagttcgaagagtttggtaactaattttaaggagttgagtccat 29157091  T
Q  616 ggctcttcaactccaaat 633  Q
    ||||||||||||||||||    
T  29157090 ggctcttcaactccaaat 29157073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 286 - 631
Target Start/End: Complemental strand, 2596380 - 2596034
Alignment:
Q  286 ctaaagctattgcagcaccaaaagcctcctttcttcctttcctccaaccatcccacaaatgtcttgacgtgctttctaaatgatagaaaccaagctttca 385  Q
    |||||||||||| ||||||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||| |||||     
T  2596380 ctaaagctattgtagcaccaaaaagctcctttcttcctttcctccaaccatcccataaatgtcttgacgtgctttctaaatgtcagaaaccaaactttcg 2596281  T
Q  386 acaaaaaccttggcagagaaccattgtattggatcgatagttctagtccgctttgctgtattatccctcaaattatatagaattgcccgttgtt-ttgat 484  Q
    ||| ||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||    
T  2596280 acataaaccttggcagagaaccattgtatttcatcgataattctagtccgctttgctgtattattcctcaaattatatagaattgctcgttgttcttgat 2596181  T
Q  485 tattagccaatattagtgtatcgttgtgatcagaaaggtgcaatggcaacaattgacaatttttcaagtctgcaaaatcatgaaatctagttcgaagagt 584  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |    
T  2596180 tattagccaatattagtgtatcgttgtgatcagaaaggtgcaatggcaacaattgacaatttttcaagtcagcaaaatcatgaaatctagtccgaagatt 2596081  T
Q  585 ttggtaactaattttaaggagttgagtccatggctcttcaactccaa 631  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  2596080 ttggtaactaattttaaggagttgagtccatggctcttcaactccaa 2596034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 286 - 631
Target Start/End: Complemental strand, 2581691 - 2581345
Alignment:
Q  286 ctaaagctattgcagcaccaaaagcctcctttcttcctttcctccaaccatcccacaaatgtcttgacgtgctttctaaatgatagaaaccaagctttca 385  Q
    |||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  2581691 ctaaagctattgtagcaccaaaaagctcctttcttcctttcctccaaccatcccacaaatgtcttgacgtgctttctaaatgtcagaaaccaagctttca 2581592  T
Q  386 acaaaaaccttggcagagaaccattgtattggatcgatagttctagtccgctttgctgtattatccctcaaattatatagaattgcccgttgtt-ttgat 484  Q
    ||| |||||||| || ||||||||| ||||  || |||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||    
T  2581591 acataaaccttgacaaagaaccattctatttcatggataattctagtccgctttgctgtattattcctcaaattatatagaattgctcgttgttcttgat 2581492  T
Q  485 tattagccaatattagtgtatcgttgtgatcagaaaggtgcaatggcaacaattgacaatttttcaagtctgcaaaatcatgaaatctagttcgaagagt 584  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||  ||||| ||||| |||||||||||||| |    
T  2581491 tattagccaatattagtgtatcattgtgatcagaaaggtgcaaaggcaacaattgacaattttccaagtcatcaaaagcatgatatctagttcgaagaat 2581392  T
Q  585 ttggtaactaattttaaggagttgagtccatggctcttcaactccaa 631  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||    
T  2581391 ttggtaactaattttaaggagttgagtccatgactcgtcaactccaa 2581345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 313 - 631
Target Start/End: Complemental strand, 2589278 - 2588959
Alignment:
Q  313 cctttcttcctttcctccaaccatcccacaaatgtcttgacgtgctttctaaatgatagaaaccaagctttcaacaaaaaccttggcagagaaccattgt 412  Q
    ||||||||  ||||||| ||||||||||||||||||||||||||||||||||||   ||||||||| ||||||||| ||||||||| |||||||||||||    
T  2589278 cctttctttttttcctctaaccatcccacaaatgtcttgacgtgctttctaaatatcagaaaccaaactttcaacataaaccttggtagagaaccattgt 2589179  T
Q  413 attggatcgatagttctagtccgctttgctgtattatccctcaaattatatagaattgcccgttgtt-ttgattattagccaatattagtgtatcgttgt 511  Q
    |||  || |||| ||||||||||||||||||| |||| ||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  2589178 atttcattgataattctagtccgctttgctgttttattcctcaaattatgtagaattgctcgttgttcttgattattagccaatattagtgtatcgttgt 2589079  T
Q  512 gatcagaaaggtgcaatggcaacaattgacaatttttcaagtctgcaaaatcatgaaatctagttcgaagagtttggtaactaattttaaggagttgagt 611  Q
    |||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  2589078 gatcagaaaggtgcaatggcaacaattgacaattttccaagtcatcaaaatcatgaaatctagttcgaagattttggtagctaattttaaggagttgagt 2588979  T
Q  612 ccatggctcttcaactccaa 631  Q
    ||||||||||||||||||||    
T  2588978 ccatggctcttcaactccaa 2588959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 128 - 245
Target Start/End: Complemental strand, 2583785 - 2583668
Alignment:
Q  128 aaaattagaagagagatggcatgtaaagaaatgaataaggaaaaggactaaaatgcataaatgtattagtgacattcacatggttccaaacaaacagaag 227  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  2583785 aaaattaaaagagagatggcatgtaaataaatgaataaggaaaaggactaaaatgcataaatgtattagtgacattcacatgtttccaaacaaagagaag 2583686  T
Q  228 agttataaaacaaaacaa 245  Q
    ||||| ||||||||||||    
T  2583685 agttacaaaacaaaacaa 2583668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 499 - 631
Target Start/End: Complemental strand, 2577041 - 2576909
Alignment:
Q  499 agtgtatcgttgtgatcagaaaggtgcaatggcaacaattgacaatttttcaagtctgcaaaatcatgaaatctagttcgaagagtttggtaactaattt 598  Q
    ||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||| |||| ||  ||||| |||||||||||||||    
T  2577041 agtgtatcgctgtgatcagaaaggtgcaatggcaacaactgaaaatttttcaagtcagcaaaatcatgatatcttgtctgaagattttggtaactaattt 2576942  T
Q  599 taaggagttgagtccatggctcttcaactccaa 631  Q
    |||||||||||||||||||||||||||||||||    
T  2576941 taaggagttgagtccatggctcttcaactccaa 2576909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 72 - 201
Target Start/End: Complemental strand, 2596628 - 2596498
Alignment:
Q  72 acaattacat-aaaagaaacaaggaaaaactgaaagttgaatggttgaattggatgaaaaattagaagagagatggcatgtaaagaaatgaataaggaaa 170  Q
    |||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||| | ||||||| ||||||| |||||||    
T  2596628 acaattacattaaaagaaacatggaaaaactgaaagtcgaatggttgaattggatgaaaaattaaaagagagatagaatgtaaaaaaatgaacaaggaaa 2596529  T
Q  171 aggactaaaatgcataaatgtattagtgaca 201  Q
    |||| | ||| ||||||||||||||||||||    
T  2596528 aggatttaaaggcataaatgtattagtgaca 2596498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 221 - 290
Target Start/End: Complemental strand, 2596500 - 2596431
Alignment:
Q  221 acagaagagttataaaacaaaacaattattaaattgtgagttgcttccaatgtccccgaaaaaacctaaa 290  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||  |||| |||||||||    
T  2596500 acagaagagttataaaacaaaacaattattacattgtgagttgcttcaaatgtcttcgaagaaacctaaa 2596431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 182 - 243
Target Start/End: Complemental strand, 2585051 - 2584987
Alignment:
Q  182 gcataaatgtattagtgacattcacatggttccaaacaaacag---aagagttataaaacaaaac 243  Q
    ||||||||| |||||||||||| ||||| ||||||||||||||   |||||||||||||||||||    
T  2585051 gcataaatgaattagtgacatttacatgtttccaaacaaacagaagaagagttataaaacaaaac 2584987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 236 - 290
Target Start/End: Complemental strand, 2581797 - 2581743
Alignment:
Q  236 aacaaaacaattattaaattgtgagttgcttccaatgtccccgaaaaaacctaaa 290  Q
    ||||||| |||||||||||||||||||||||| ||||||  |||| |||||||||    
T  2581797 aacaaaaaaattattaaattgtgagttgcttcaaatgtcttcgaagaaacctaaa 2581743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 415
Target Start/End: Complemental strand, 2584869 - 2584824
Alignment:
Q  370 agaaaccaagctttcaacaaaaaccttggcagagaaccattgtatt 415  Q
    ||||||||| ||||||||| || ||||| |||||||||||||||||    
T  2584869 agaaaccaaactttcaacataagccttgacagagaaccattgtatt 2584824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 589 - 634
Target Start/End: Complemental strand, 14514969 - 14514924
Alignment:
Q  589 taactaattttaaggagttgagtccatggctcttcaactccaaatt 634  Q
    |||||||||||||||| ||||||||| |  ||||||||||||||||    
T  14514969 taactaattttaaggaattgagtccaagaatcttcaactccaaatt 14514924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 338 - 633
Target Start/End: Original strand, 21642431 - 21642727
Alignment:
Q  338 ccacaaatgtcttgacgtgctttctaaatgatagaaaccaagctttcaacaaaaaccttggcagagaaccattgtattggatcgatagttctagtccgct 437  Q
    ||||||||||||||||||||||||||||||  ||||||||| ||||||||| ||||||||||||||||||||||||||  ||||||| ||||||||||||    
T  21642431 ccacaaatgtcttgacgtgctttctaaatgtcagaaaccaaactttcaacataaaccttggcagagaaccattgtatttcatcgataattctagtccgct 21642530  T
Q  438 ttgctgtattatccctcaaattatatagaattgcccgttgtt-ttgattattagccaatattagtgtatcgttgtgatcagaaaggtgcaatggcaacaa 536  Q
    |||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  21642531 ttgctgtattattcctcaaattatatagaattgctcgttgttcttgattattagccaatattagtgtatcgttgtgatccgaaaggtgcaatggcaacaa 21642630  T
Q  537 ttgacaatttttcaagtctgcaaaatcatgaaatctagttcgaagagtttggtaactaattttaaggagttgagtccatggctcttcaactccaaat 633  Q
    |||||| |||| |||||| |||||||||||| ||||||| |||||| ||||||| |||||||||||||||| |||||| ||||||| ||||||||||    
T  21642631 ttgacatttttccaagtcagcaaaatcatgatatctagtccgaagattttggtagctaattttaaggagttaagtccacggctctttaactccaaat 21642727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 342 - 633
Target Start/End: Original strand, 21620765 - 21621057
Alignment:
Q  342 aaatgtcttgacgtgctttctaaatgatagaaaccaagctttcaacaaaaaccttggcagagaaccattgtattggatcgatagttctagtccgctttgc 441  Q
    ||||||||||||||||||||||||||  ||||||||| ||||||||| ||||||||||||||||||||||||||  ||||||| ||||||||||||||||    
T  21620765 aaatgtcttgacgtgctttctaaatgtcagaaaccaaactttcaacataaaccttggcagagaaccattgtatttcatcgataattctagtccgctttgc 21620864  T
Q  442 tgtattatccctcaaattatatagaattgcccgttgtt-ttgattattagccaatattagtgtatcgttgtgatcagaaaggtgcaatggcaacaattga 540  Q
    |||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  21620865 tgtattattcctcaaattatatagaattgctcgttgttcttgattattagccaatattagtgtatcgttgtgctccgaaaggtgcaatggcaacaattga 21620964  T
Q  541 caatttttcaagtctgcaaaatcatgaaatctagttcgaagagtttggtaactaattttaaggagttgagtccatggctcttcaactccaaat 633  Q
    || |||| |||||| |||||||||||| ||||||| |||||| ||||||| |||||||||||||||| |||||| | ||||||||||||||||    
T  21620965 catttttccaagtcagcaaaatcatgatatctagtccgaagattttggtagctaattttaaggagttaagtccacgcctcttcaactccaaat 21621057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 578 - 634
Target Start/End: Complemental strand, 3625814 - 3625758
Alignment:
Q  578 gaagagtttggtaactaattttaaggagttgagtccatggctcttcaactccaaatt 634  Q
    ||||| |||| |||||||||||||| | ||||||||| | ||||||||| |||||||    
T  3625814 gaagattttgataactaattttaagaaattgagtccaagactcttcaaccccaaatt 3625758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 310 - 633
Target Start/End: Complemental strand, 30399472 - 30399148
Alignment:
Q  310 cctcctttcttcctttcctccaaccatcccacaaatgtcttgacgtgctttctaaatgatagaaaccaagctttcaacaaaaaccttggcagagaaccat 409  Q
    ||||| ||||||||||| || ||||| | |||||||||||||||||||||||||||||  ||||||||| ||||||||| ||||||||| ||||||||||    
T  30399472 cctccattcttcctttcatctaaccagcgcacaaatgtcttgacgtgctttctaaatgtcagaaaccaaactttcaacataaaccttggtagagaaccat 30399373  T
Q  410 tgtattggatcgatagttctagtccgctttgctgtattatccctcaaattatatagaattgcccgttgtt-ttgattattagccaatattagtgtatcgt 508  Q
    ||||||  ||||||| |||||| |  |||| ||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||    
T  30399372 tgtatttcatcgataattctagccaactttactgtattattcctcaaattatatagaattgctcgttgttcttgattattagccaatattagtgtatagt 30399273  T
Q  509 tgtgatcagaaaggtgcaatggcaacaattgacaatttttcaagtctgcaaaatcatgaaatctagttcgaagagtttggtaactaattttaaggagttg 608  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||| |||||| ||||| | |||||||||||||||||    
T  30399272 tgtgatccgaaaggtgcaatggcaacaattgacaattttccaagtcagcaaaatcatgatatctagtccgaagattttggcagctaattttaaggagttg 30399173  T
Q  609 agtccatggctcttcaactccaaat 633  Q
    |||||| ||||||||||||| ||||    
T  30399172 agtccacggctcttcaactctaaat 30399148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 589 - 634
Target Start/End: Original strand, 6921351 - 6921396
Alignment:
Q  589 taactaattttaaggagttgagtccatggctcttcaactccaaatt 634  Q
    |||||||||||||||| ||||||||| |  ||||||||||||||||    
T  6921351 taactaattttaaggaattgagtccaagattcttcaactccaaatt 6921396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 589 - 634
Target Start/End: Original strand, 6947881 - 6947926
Alignment:
Q  589 taactaattttaaggagttgagtccatggctcttcaactccaaatt 634  Q
    |||||||||||||||| ||||||||| |  ||||||||||||||||    
T  6947881 taactaattttaaggaattgagtccaagattcttcaactccaaatt 6947926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 589 - 634
Target Start/End: Complemental strand, 20770719 - 20770674
Alignment:
Q  589 taactaattttaaggagttgagtccatggctcttcaactccaaatt 634  Q
    |||||||||||||||| |||| |||||| |||||||| ||||||||    
T  20770719 taactaattttaaggaattgaatccatgactcttcaattccaaatt 20770674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 160; Significance: 6e-85; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 327 - 629
Target Start/End: Complemental strand, 46769703 - 46769400
Alignment:
Q  327 ctccaaccatcccacaaatgtcttgacgtgctttctaaatgatagaaaccaagctttcaacaaaaaccttggcagagaaccattgtattggatcgatagt 426  Q
    ||||| ||||||||||||||||||||| |||||||||||||  |||||| || ||||||||  ||||||||||||||||||| ||||||  || |||| |    
T  46769703 ctccagccatcccacaaatgtcttgacatgctttctaaatgtaagaaacaaaactttcaacgtaaaccttggcagagaaccaatgtatttcattgataat 46769604  T
Q  427 tctagtccgctttgctgtattatccctcaaattatatagaattgcccgttgtt-ttgattattagccaatattagtgtatcgttgtgatcagaaaggtgc 525  Q
    | |||| | |||||||||||||||||||||||||||||||||||| || |||| |||||| || ||||||||| |||||||  | |||||| ||||||||    
T  46769603 tttagttctctttgctgtattatccctcaaattatatagaattgctcgctgttcttgattgttggccaatattcgtgtatcactttgatcataaaggtgc 46769504  T
Q  526 aatggcaacaattgacaatttttcaagtctgcaaaatcatgaaatctagttcgaagagtttggtaactaattttaaggagttgagtccatggctcttcaa 625  Q
    |||||| |||| ||||||| || |||||| |||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||| ||||||||||    
T  46769503 aatggcgacaactgacaatattccaagtcagcaaaatcatgaaatctagtccgaagattttggtaactaattttaagaagttgagtccaaggctcttcaa 46769404  T
Q  626 ctcc 629  Q
    ||||    
T  46769403 ctcc 46769400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 72 - 254
Target Start/End: Complemental strand, 46769964 - 46769773
Alignment:
Q  72 acaattacataaaagaaacaaggaaaaactgaaa-gttgaatggttgaattggatgaaaaattaga-----agagagatggcatgtaaagaaatgaataa 165  Q
    ||||||||||  |||||| ||||||||||||||| |||||||| |||||||||||| ||||||| |     | ||||||| ||| |||||||||||||||    
T  46769964 acaattacattgaagaaagaaggaaaaactgaaaagttgaatgattgaattggatgtaaaattaaattaaaatagagatgacatataaagaaatgaataa 46769865  T
Q  166 ggaaaaggactaaaatgcataaatgtattagtgacattcacatggttccaaacaaacag---aagagttataaaacaaaacaattattaaat 254  Q
    ||| | ||||||||| ||||||||||| ||||||||| |||||| ||||||||||||||   |||||||||||||||||| |||||||||||    
T  46769864 ggatatggactaaaaggcataaatgtactagtgacatccacatgcttccaaacaaacagaagaagagttataaaacaaaataattattaaat 46769773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 487 - 634
Target Start/End: Complemental strand, 36260424 - 36260277
Alignment:
Q  487 ttagccaatattagtgtatcgttgtgatcagaaaggtgcaatggcaacaattgacaatttttcaagtctgcaaaatcatgaaatctagttcgaagagttt 586  Q
    ||||||||||||||||||||    |||||||||||||||||||||||| ||| | ||  || ||||||  ||||  || ||  | || | |||||| |||    
T  36260424 ttagccaatattagtgtatcaccatgatcagaaaggtgcaatggcaaccatttagaaagttccaagtcaacaaagccacgatgtatactccgaagatttt 36260325  T
Q  587 ggtaactaattttaaggagttgagtccatggctcttcaactccaaatt 634  Q
    | || ||||||||||  |||||| |||| | |||||||||||||||||    
T  36260324 gatagctaattttaataagttgaatccaagactcttcaactccaaatt 36260277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 587 - 634
Target Start/End: Original strand, 19604462 - 19604509
Alignment:
Q  587 ggtaactaattttaaggagttgagtccatggctcttcaactccaaatt 634  Q
    |||||||||||||||||| ||||||||| |  ||||||||||||||||    
T  19604462 ggtaactaattttaaggaattgagtccaggagtcttcaactccaaatt 19604509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 584 - 634
Target Start/End: Complemental strand, 29106888 - 29106838
Alignment:
Q  584 tttggtaactaattttaaggagttgagtccatggctcttcaactccaaatt 634  Q
    ||||||||||||||||||  ||||||||||| | ||||||||| |||||||    
T  29106888 tttggtaactaattttaaaaagttgagtccaagactcttcaaccccaaatt 29106838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 589 - 634
Target Start/End: Original strand, 660848 - 660893
Alignment:
Q  589 taactaattttaaggagttgagtccatggctcttcaactccaaatt 634  Q
    |||||||||||||||| ||||||||| | ||||||||||| |||||    
T  660848 taactaattttaaggaattgagtccaagactcttcaactcgaaatt 660893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 589 - 634
Target Start/End: Complemental strand, 20352164 - 20352119
Alignment:
Q  589 taactaattttaaggagttgagtccatggctcttcaactccaaatt 634  Q
    |||||||||||||  |||||||||||||  ||||||||||||||||    
T  20352164 taactaattttaaaaagttgagtccatgaatcttcaactccaaatt 20352119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 471
Target Start/End: Complemental strand, 36260578 - 36260477
Alignment:
Q  370 agaaaccaagctttcaacaaaaaccttggcagagaaccattgtattggatcgatagttctagtccgctttgctgtattatccctcaaattatatagaatt 469  Q
    ||||||||||||||||||| || ||||| || ||||||||| |||   |||| || |||||||  ||   ||| ||||||| ||||| ||||||||||||    
T  36260578 agaaaccaagctttcaacataagccttgacaaagaaccattttatcttatcggtaattctagtttgcaccgctatattatctctcaagttatatagaatt 36260479  T
Q  470 gc 471  Q
    ||    
T  36260478 gc 36260477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 578 - 634
Target Start/End: Original strand, 18997588 - 18997644
Alignment:
Q  578 gaagagtttggtaactaattttaaggagttgagtccatggctcttcaactccaaatt 634  Q
    |||||||| ||||||||||||||||||  |||||||| | ||  |||||||||||||    
T  18997588 gaagagttaggtaactaattttaaggaactgagtccaggacttgtcaactccaaatt 18997644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 578 - 634
Target Start/End: Complemental strand, 36255446 - 36255390
Alignment:
Q  578 gaagagtttggtaactaattttaaggagttgagtccatggctcttcaactccaaatt 634  Q
    ||||| |||| || |||| ||||| |||||||||||| | |||||||||||||||||    
T  36255446 gaagattttgatagctaactttaatgagttgagtccaagactcttcaactccaaatt 36255390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 5e-24; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 370 - 546
Target Start/End: Complemental strand, 35767307 - 35767130
Alignment:
Q  370 agaaaccaagctttcaacaaaaaccttggcagagaaccattgtattggatcgatagttctagtccgctttgctgtattatccctcaaattatatagaatt 469  Q
    ||||||||||||||| ||| ||||||||| ||||||||| ||||||  |||  |||||||||| |||  ||||  |||||| ||||||||||||||||||    
T  35767307 agaaaccaagctttcgacataaaccttggtagagaaccagtgtattctatcagtagttctagttcgcactgctccattatctctcaaattatatagaatt 35767208  T
Q  470 gcccgttgtt-ttgattattagccaatattagtgtatcgttgtgatcagaaaggtgcaatggcaacaattgacaattt 546  Q
    ||  ||| || ||  || ||||||||||||||||||||    |||||||||||||| |||||||| || ||| |||||    
T  35767207 gcttgttcttcttccttgttagccaatattagtgtatcaccatgatcagaaaggtgtaatggcaagaactgagaattt 35767130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 589 - 634
Target Start/End: Complemental strand, 53774909 - 53774864
Alignment:
Q  589 taactaattttaaggagttgagtccatggctcttcaactccaaatt 634  Q
    |||||||||||||||| ||||||||| | |||||||||||||||||    
T  53774909 taactaattttaaggaattgagtccaagactcttcaactccaaatt 53774864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 487 - 634
Target Start/End: Complemental strand, 19359308 - 19359161
Alignment:
Q  487 ttagccaatattagtgtatcgttgtgatcagaaaggtgcaatggcaacaattgacaatttttcaagtctgcaaaatcatgaaatctagttcgaagagttt 586  Q
    ||||||||||| ||||||||    |||||||||||||| ||||| ||| ||| | ||  |||||||||  |||| ||| ||  | || |  ||||| |||    
T  19359308 ttagccaatatgagtgtatcaccatgatcagaaaggtgaaatggtaaccatttagaaagtttcaagtcaacaaagtcacgatgtatactctgaagatttt 19359209  T
Q  587 ggtaactaattttaaggagttgagtccatggctcttcaactccaaatt 634  Q
    | || ||||||||||  ||||||||||| | |||||||||||||||||    
T  19359208 gatacctaattttaataagttgagtccaagactcttcaactccaaatt 19359161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 415
Target Start/End: Complemental strand, 19359462 - 19359417
Alignment:
Q  370 agaaaccaagctttcaacaaaaaccttggcagagaaccattgtatt 415  Q
    ||||||||||||||||||| || ||||| |||||||||||| ||||    
T  19359462 agaaaccaagctttcaacataagccttgacagagaaccattttatt 19359417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 593 - 634
Target Start/End: Complemental strand, 35767083 - 35767042
Alignment:
Q  593 taattttaaggagttgagtccatggctcttcaactccaaatt 634  Q
    ||||||||||||||||| |||| | |||||||||||||||||    
T  35767083 taattttaaggagttgaatccaagactcttcaactccaaatt 35767042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 586 - 634
Target Start/End: Original strand, 24330897 - 24330945
Alignment:
Q  586 tggtaactaattttaaggagttgagtccatggctcttcaactccaaatt 634  Q
    |||||||||| |||||||||||||||||| |  |||||||| |||||||    
T  24330897 tggtaactaactttaaggagttgagtccaagaatcttcaaccccaaatt 24330945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 586 - 634
Target Start/End: Original strand, 21855381 - 21855429
Alignment:
Q  586 tggtaactaattttaaggagttgagtccatggctcttcaactccaaatt 634  Q
    |||||||||| |||||||||||||||||| |  |||||||| |||||||    
T  21855381 tggtaactaactttaaggagttgagtccaagaatcttcaaccccaaatt 21855429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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