View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18588_low_11 (Length: 443)

Name: NF18588_low_11
Description: NF18588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18588_low_11
NF18588_low_11
[»] chr1 (13 HSPs)
chr1 (159-426)||(11620030-11620297)
chr1 (162-426)||(16584669-16584935)
chr1 (159-421)||(1161254-1161507)
chr1 (159-408)||(8084099-8084348)
chr1 (160-298)||(18461222-18461362)
chr1 (224-426)||(42009781-42009999)
chr1 (159-258)||(25785863-25785962)
chr1 (250-386)||(25787286-25787428)
chr1 (69-168)||(16584949-16585048)
chr1 (157-207)||(42009995-42010045)
chr1 (71-126)||(8083990-8084045)
chr1 (160-230)||(11911698-11911768)
chr1 (69-168)||(42010054-42010153)
[»] chr8 (15 HSPs)
chr8 (159-426)||(44223132-44223401)
chr8 (159-421)||(7956150-7956414)
chr8 (164-318)||(35948944-35949098)
chr8 (159-426)||(17722206-17722494)
chr8 (344-426)||(35949099-35949181)
chr8 (69-168)||(35948829-35948928)
chr8 (300-405)||(25808103-25808210)
chr8 (160-207)||(34760832-34760879)
chr8 (160-353)||(3767530-3767729)
chr8 (298-402)||(25343933-25344039)
chr8 (298-394)||(34760653-34760749)
chr8 (69-115)||(7956468-7956514)
chr8 (160-222)||(9040525-9040587)
chr8 (69-115)||(44223455-44223501)
chr8 (71-264)||(25344101-25344294)
[»] chr2 (10 HSPs)
chr2 (157-415)||(31111523-31111783)
chr2 (169-426)||(4638276-4638550)
chr2 (160-381)||(13852130-13852342)
chr2 (166-385)||(36009278-36009504)
chr2 (239-413)||(30340563-30340745)
chr2 (69-163)||(31111415-31111509)
chr2 (171-405)||(38607090-38607332)
chr2 (69-157)||(12894009-12894097)
chr2 (69-124)||(13852398-13852453)
chr2 (160-299)||(5526329-5526470)
[»] chr4 (6 HSPs)
chr4 (172-393)||(28319128-28319351)
chr4 (157-338)||(24466202-24466391)
chr4 (159-422)||(23107711-23107985)
chr4 (159-273)||(4413566-4413680)
chr4 (313-402)||(38388177-38388268)
chr4 (69-125)||(23108039-23108095)
[»] chr5 (6 HSPs)
chr5 (159-426)||(16746238-16746495)
chr5 (165-318)||(19947826-19947981)
chr5 (69-426)||(31895898-31896258)
chr5 (159-223)||(16746550-16746614)
chr5 (70-168)||(19947711-19947809)
chr5 (298-418)||(17770471-17770592)
[»] chr7 (8 HSPs)
chr7 (157-426)||(7995055-7995340)
chr7 (159-343)||(7352258-7352443)
chr7 (159-343)||(46993360-46993552)
chr7 (159-337)||(39695194-39695370)
chr7 (160-234)||(11727327-11727401)
chr7 (298-412)||(32971489-32971605)
chr7 (187-270)||(2197633-2197716)
chr7 (69-126)||(3997069-3997126)
[»] scaffold0879 (1 HSPs)
scaffold0879 (157-338)||(467-656)
[»] scaffold0565 (1 HSPs)
scaffold0565 (160-407)||(1667-1917)
[»] chr3 (7 HSPs)
chr3 (160-298)||(46655628-46655768)
chr3 (334-426)||(2095504-2095595)
chr3 (298-405)||(11503138-11503247)
chr3 (342-405)||(11690034-11690097)
chr3 (70-166)||(44471020-44471116)
chr3 (160-207)||(44682023-44682070)
chr3 (298-384)||(44285802-44285890)
[»] scaffold0070 (3 HSPs)
scaffold0070 (298-402)||(33982-34088)
scaffold0070 (300-402)||(14007-14111)
scaffold0070 (69-204)||(33731-33866)
[»] chr6 (3 HSPs)
chr6 (298-353)||(9826996-9827051)
chr6 (298-384)||(5416284-5416370)
chr6 (298-418)||(26880030-26880155)
[»] scaffold0564 (1 HSPs)
scaffold0564 (301-363)||(6564-6626)


Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 159 - 426
Target Start/End: Original strand, 11620030 - 11620297
Alignment:
Q  159 gaaaccgatctagtttggttttgttcatggtttttcattttgagatccgtgaaactgatgaaccaatccgatgatactcacactccttattttactaata 258  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  11620030 gaaaccgatctagtttggtttggttcatggtttttcattttgagatctgtgaaaccgatgaaccaatccgatgatactcacactacttattttactaata 11620129  T
Q  259 ttatcctacctcacaaacttatggttaaacccaaaattaaacataaaatactttttaatcaattcaatttctcccatcttcatctcatctcatcagttac 358  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  11620130 ttatcctacctcacaaacttatggttaaacccaaaattaaacatgaaatactttttaatcaattcactttctcccatcttcatctcatctcatcagttac 11620229  T
Q  359 actctttcattcctactaaaaaagaaaccctagccgttaaccacaccaaacccattgttcatcgccac 426  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11620230 actctttcattcctactaaaaaagaaaccctagccgttaaccacaccaaacccattgttcatcgccac 11620297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 162 - 426
Target Start/End: Complemental strand, 16584935 - 16584669
Alignment:
Q  162 accgatctagtttggttttgttcatggtttttcattttgagatccgtgaaactgatgaaccaatccgatgatactcacactccttattttactaatatta 261  Q
    |||||||||||||||||| ||||||||||||| |||| |||||||||||||| |||||||||||| |||||||  || ||||||||||||||||||||||    
T  16584935 accgatctagtttggtttggttcatggttttttatttcgagatccgtgaaaccgatgaaccaatctgatgataaccaaactccttattttactaatatta 16584836  T
Q  262 tcctacctcaca--aacttatggttaaacccaaaattaaacataaaatactttttaatcaattcaatttctcccatcttcatctcatctcatcagttaca 359  Q
    || |||||||||  |||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||  |||||||||||||||||||||| | |    
T  16584835 tcatacctcacacaaacttatggttagacccaaaattaaacataaaatactttttaatccattcactttctctaatcttcatctcatctcatcagtcaga 16584736  T
Q  360 ctctttcattcctactaaaaaagaaaccctagccgttaaccacaccaaacccattgttcatcgccac 426  Q
    || ||||||| ||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  16584735 ctatttcatttctacttaaaaagaaaccctagccgtcaaccacaccaagcccattgttcatcgccac 16584669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 159 - 421
Target Start/End: Complemental strand, 1161507 - 1161254
Alignment:
Q  159 gaaaccgatctagtttggttttgttcatggtttttcattttgagatccgtgaaactgatgaaccaatccgatgatactcacactccttattttactaata 258  Q
    ||||||||||||||||||||| |||||||||||||||||| || ||||||||||| ||||||||||||||||||||  ||||||||||||||||||||||    
T  1161507 gaaaccgatctagtttggtttggttcatggtttttcatttcgatatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaata 1161408  T
Q  259 ttatcctacct--cacaaacttatggttaaacccaaaattaaacataaaatactttttaatcaattcaatttctcccatcttcatctcatctcatcagtt 356  Q
    |||||||||||  ||||||||||||||| | ||||||||||||||||||||| ||||||||| ||||| ||||           ||| |||||||||||     
T  1161407 ttatcctacctcacacaaacttatggttcagcccaaaattaaacataaaatattttttaatccattcactttc-----------tcttatctcatcagtc 1161319  T
Q  357 acactctttcattcctactaaaaaagaaaccctagccgttaaccacaccaaacccattgttcatc 421  Q
    | ||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  1161318 agactctttcatttctactaaaaaagaaaccctagtcgtcaaccacaccaaacccattgttcatc 1161254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 159 - 408
Target Start/End: Original strand, 8084099 - 8084348
Alignment:
Q  159 gaaaccgatctagtttggttttgttcatggtttttcattttgagatccgtgaaactgatgaaccaatccgatgatactcacactccttattttactaata 258  Q
    ||||||||||||||||||||| ||||||||||||||||||  |||||||||||||||||||| |||||||||||||  |||||||||||||||||||||     
T  8084099 gaaaccgatctagtttggtttggttcatggtttttcatttcaagatccgtgaaactgatgaatcaatccgatgataaccacactccttattttactaatc 8084198  T
Q  259 ---ttatcctacctcaca--aacttatggttaaacccaaaattaaacataaaatactttttaatcaattcaatttctcccatcttcatctcatctcatca 353  Q
       |||||||||||||||  |||| |||||||  | ||||||||||||||||||| ||||||||| ||||| |||||| ||||||||||||||      |    
T  8084199 catttatcctacctcacacaaactcatggttaggcacaaaattaaacataaaataatttttaatctattcactttctctcatcttcatctcatt-----a 8084293  T
Q  354 gttacactctttcattcctactaaaaaagaaaccctagccgttaaccacaccaaa 408  Q
    || | |||||| |||| ||| ||||||||||||||||||||| ||||||||||||    
T  8084294 gtcagactcttccatttctattaaaaaagaaaccctagccgtcaaccacaccaaa 8084348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 160 - 298
Target Start/End: Original strand, 18461222 - 18461362
Alignment:
Q  160 aaaccgatctagtttggttttgttcatggtttttcattttgagatccgtgaaactgatgaaccaatccgatgatactcacactccttattttactaatat 259  Q
    |||||||| ||||||||||| ||||||| ||||| |||| |||||||||||||| ||||||||||||||||||||  ||||||| ||| |||| ||||||    
T  18461222 aaaccgatttagtttggtttggttcatgattttttatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactcattaatttattaatat 18461321  T
Q  260 tatcctacct--cacaaacttatggttaaacccaaaattaa 298  Q
    ||||| ||||  ||||||||||||||||| |||||||||||    
T  18461322 tatccaacctcgcacaaacttatggttaagcccaaaattaa 18461362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 224 - 426
Target Start/End: Complemental strand, 42009999 - 42009781
Alignment:
Q  224 atccgatgatactcacactccttattttactaatattatcctacctcaca--aacttatggttaaacccaaaattaaa-----cataaaatacttttta- 315  Q
    |||||||||||  |||||||||||| ||||||||| ||||||||||||||  ||||||||||||  || |||||||||     |||||||||||||||      
T  42009999 atccgatgataaccacactccttatattactaatagtatcctacctcacacaaacttatggttaggcctaaaattaaagtcaacataaaatacttttttt 42009900  T
Q  316 atcaattcaatttctcccatctt--------catctcatctcatcagttacactctttcattcctactaaaaaagaaaccctagccgttaaccacaccaa 407  Q
    ||| ||||| |||||| ||| ||        ||||||||||| ||||| | |||||| |||| |||||||||||||||||||||||||||||||||||||    
T  42009899 atccattcattttctctcattttttatctgacatctcatctcttcagtcagactcttacatttctactaaaaaagaaaccctagccgttaaccacaccaa 42009800  T
Q  408 acccattgttcatcgccac 426  Q
    || |||||||||| |||||    
T  42009799 actcattgttcattgccac 42009781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 159 - 258
Target Start/End: Original strand, 25785863 - 25785962
Alignment:
Q  159 gaaaccgatctagtttggttttgttcatggtttttcattttgagatccgtgaaactgatgaaccaatccgatgatactcacactccttattttactaata 258  Q
    ||||||||| ||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||  |||| || ||||||||||||||    
T  25785863 gaaaccgatatagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacattctttattttactaata 25785962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 250 - 386
Target Start/End: Original strand, 25787286 - 25787428
Alignment:
Q  250 ttactaatattatcctacctcaca--aacttatggttaaacccaaaattaaacataaaatactttttaat-----caattcaatttctcccatcttcatc 342  Q
    ||||||||||||||||||||||||  ||||||| |||| |||||||||||||||| ||||| ||||||||     || |||| |||||| |||| |||||    
T  25787286 ttactaatattatcctacctcacacaaacttattgttagacccaaaattaaacattaaataatttttaatccatgcacttcactttctctcatc-tcatc 25787384  T
Q  343 tcatctcatcagttacactctttcattcctactaaaaaagaaac 386  Q
    ||||||||||||| | ||||||||||| ||||||||||||||||    
T  25787385 tcatctcatcagtcagactctttcatttctactaaaaaagaaac 25787428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 69 - 168
Target Start/End: Complemental strand, 16585048 - 16584949
Alignment:
Q  69 ggggtgtaagtggttcgaacaaaatcaacgaaatcgaaagtgcaaactgaaccaaaccnnnnnnntatcagaccttgtttcgttcggtttgaaaccgatc 168  Q
    ||||||||||||||||| |||||| |||||||| ||||||| ||||| |||||||| |       ||||  ||||||||| |||||||||||||||||||    
T  16585048 ggggtgtaagtggttcggacaaaaccaacgaaaccgaaagtccaaaccgaaccaaaacgaaaaaatatccaaccttgtttggttcggtttgaaaccgatc 16584949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 157 - 207
Target Start/End: Complemental strand, 42010045 - 42009995
Alignment:
Q  157 ttgaaaccgatctagtttggttttgttcatggtttttcattttgagatccg 207  Q
    |||||||||||||||||| ||||   |||||||||||||||||||||||||    
T  42010045 ttgaaaccgatctagtttagtttgactcatggtttttcattttgagatccg 42009995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 126
Target Start/End: Original strand, 8083990 - 8084045
Alignment:
Q  71 ggtgtaagtggttcgaacaaaatcaacgaaatcgaaagtgcaaactgaaccaaacc 126  Q
    ||||||||||||||| ||| || |||||||||||||||| |||||| || ||||||    
T  8083990 ggtgtaagtggttcggacataaccaacgaaatcgaaagtccaaactaaatcaaacc 8084045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 160 - 230
Target Start/End: Original strand, 11911698 - 11911768
Alignment:
Q  160 aaaccgatctagtttggttttgttcatggtttttcattttgagatccgtgaaactgatgaaccaatccgat 230  Q
    |||||||||||||||| ||| |||| |||||||| ||||||| |||||   ||| |||||||||| |||||    
T  11911698 aaaccgatctagtttgatttagttcttggtttttaattttgaaatccgatgaaccgatgaaccaaaccgat 11911768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 168
Target Start/End: Complemental strand, 42010153 - 42010054
Alignment:
Q  69 ggggtgtaagtggttcgaacaaaatcaacgaaatcgaaagtgcaaactgaaccaaaccnnnnnnntatcagaccttgtttcgttcggtttgaaaccgatc 168  Q
    |||||||||| |||||| |  ||| |||||||| ||| ||| ||||||| ||||||||       |||| ||| |||||| |||||||||||||||||||    
T  42010153 ggggtgtaagcggttcggattaaaccaacgaaaccgatagtccaaactggaccaaaccgaaaaaatatccgacattgtttggttcggtttgaaaccgatc 42010054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 156; Significance: 1e-82; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 159 - 426
Target Start/End: Complemental strand, 44223401 - 44223132
Alignment:
Q  159 gaaaccgatctagtttggttttgttcatggtttttcattttgagatccgtgaaactgatgaaccaatccgatgatactcacactccttattttactaata 258  Q
    |||||| |||||||||||||| ||||||| |||||||||| |||||||||||||| ||||||||||||||||||||  ||||||||||||||||| ||||    
T  44223401 gaaaccaatctagtttggtttggttcatgatttttcatttcgagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttacaaata 44223302  T
Q  259 ttatcctacct--cacaaacttatggttaaacccaaaattaaacataaaatac-tttttaatcaattcaatttctcccatcttcatctcatctcatcagt 355  Q
    |||||||||||  ||||||||||||||||  |||||||||||||||||||||| ||||||||| ||||| |||||| |||||||||| | |||||||| |    
T  44223301 ttatcctacctcacacaaacttatggttaggcccaaaattaaacataaaatacttttttaatccattcactttctctcatcttcatcccgtctcatcaat 44223202  T
Q  356 tacactctttcattcctactaaaaaagaaaccctagccgttaaccacaccaaacccattgttcatcgccac 426  Q
    || ||||||||||| |||||||||||||||| | |||||| ||||||||||||| || |||||||||||||    
T  44223201 tatactctttcatttctactaaaaaagaaactcaagccgtcaaccacaccaaactca-tgttcatcgccac 44223132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 159 - 421
Target Start/End: Complemental strand, 7956414 - 7956150
Alignment:
Q  159 gaaaccgatctagtttggttttgttcatggtttttcattttgagatccgtgaaactgatgaaccaatccgatgatactcacactccttattttactaata 258  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||  ||||||| ||||||||||||||||||||  || |||||||||||||||||||    
T  7956414 gaaaccgatctagtttggtttggttcatggtttttcattttgagatatgtgaaaccgatgaaccaatccgatgataaccatactccttattttactaata 7956315  T
Q  259 ttatcctacct--cacaaacttatggttaaacccaaaattaaacataaaatactttttaatcaattcaatttctcccatcttcatctcatctcatcagtt 356  Q
    |||||||||||  ||||||||||||||||  ||||||||||||||||||||| ||||||||  ||||  |||||| ||| |||||||||||||||||||     
T  7956314 ttatcctacctcacacaaacttatggttatgcccaaaattaaacataaaatattttttaatacattctctttctctcatattcatctcatctcatcagtc 7956215  T
Q  357 acactctttcattcctactaaaaaagaaaccctagccgttaaccacaccaaacccattgttcatc 421  Q
    | ||||||| ||| |||||||||||||||| ||||  || ||||||||||||| |||||||||||    
T  7956214 aaactctttgatttctactaaaaaagaaactctagttgtcaaccacaccaaactcattgttcatc 7956150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 164 - 318
Target Start/End: Original strand, 35948944 - 35949098
Alignment:
Q  164 cgatctagtttggttttgttcatggtttttcattttgagatccgtgaaactgatgaaccaatccgatgatactcacactccttattttactaatattatc 263  Q
    ||||||||||||||||  ||||||||||||||||| ||||||| |||||| ||||||||||||||||||||   ||| ||||||||||||||||||||||    
T  35948944 cgatctagtttggtttgattcatggtttttcatttcgagatccatgaaaccgatgaaccaatccgatgataacaacattccttattttactaatattatc 35949043  T
Q  264 ctacctcacaaacttatggttaaacccaaaattaaacataaaatactttttaatc 318  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  35949044 ctacctcacaaacttatggttaggcccaaaattaaacataaaatactttttaatc 35949098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 159 - 426
Target Start/End: Complemental strand, 17722494 - 17722206
Alignment:
Q  159 gaaaccgatctagtttggttttgttcatggtttttcattttgagatccgtgaaactgatgaaccaatccgatgatactcacactccttattttactaata 258  Q
    ||||||||||||||||||||| ||||||| |||||||||| |||||| ||||||| ||||||||||||||||||||  ||||||| ||| ||||||||||    
T  17722494 gaaaccgatctagtttggtttggttcatgatttttcatttcgagatctgtgaaaccgatgaaccaatccgatgataaccacactcattactttactaata 17722395  T
Q  259 tta--------tcctacct--cacaaacttatggttaaacccaaaattaaacata----------aaatactttttaatcaattcaatttctcccatctt 338  Q
    |||        ||||||||  |||| ||| |||||||  ||||||||||||||||          ||||| ||||||||| ||||| ||| || ||||||    
T  17722394 ttatcataaattcctacctcacacatactcatggttaggcccaaaattaaacataaaataattttaaataatttttaatccattcactttatctcatctt 17722295  T
Q  339 catctcatctcatcagttacactctttcattcctactaaaaaagaaaccctagccgttaa----ccacaccaaacccattgttcatcgccac 426  Q
    ||   |||  ||| ||| | ||||||||||| ||||||||||| ||||||||||||| ||    ||||||||||||||||||||||| ||||    
T  17722294 ca---cataccattagtcagactctttcatttctactaaaaaataaaccctagccgtcaacctgccacaccaaacccattgttcatcaccac 17722206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 344 - 426
Target Start/End: Original strand, 35949099 - 35949181
Alignment:
Q  344 catctcatcagttacactctttcattcctactaaaaaagaaaccctagccgttaaccacaccaaacccattgttcatcgccac 426  Q
    ||||| |||||| | ||||||||||| |||||| |||||||||| || |||| |||||||||||||| |||||||||||||||    
T  35949099 catcttatcagtcagactctttcatttctactagaaaagaaaccataaccgtcaaccacaccaaaccaattgttcatcgccac 35949181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 69 - 168
Target Start/End: Original strand, 35948829 - 35948928
Alignment:
Q  69 ggggtgtaagtggttcgaacaaaatcaacgaaatcgaaagtgcaaactgaaccaaaccnnnnnnntatcagaccttgtttcgttcggtttgaaaccgatc 168  Q
    |||||||||||| |||| |||||| |||||||| ||||||| |||| ||||||||| |       |||| ||| |||||| |||||||||||||||||||    
T  35948829 ggggtgtaagtgtttcggacaaaaccaacgaaaacgaaagtccaaattgaaccaaaacaaaaaaatatccgactttgtttggttcggtttgaaaccgatc 35948928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 300 - 405
Target Start/End: Complemental strand, 25808210 - 25808103
Alignment:
Q  300 cataaaatactttttaatcaattcaatttctcccatcttcatctcatctcatcagttacactc--tttcattcctactaaaaaagaaaccctagccgtta 397  Q
    |||||| ||||  |||||| ||||| ||||||||||| |||||| ||||||||| | | ||||  ||||||| ||||||||| || |||||||||| | |    
T  25808210 cataaagtactacttaatccattcactttctcccatcgtcatctaatctcatcactcagactcgatttcatttctactaaaataggaaccctagccatca 25808111  T
Q  398 accacacc 405  Q
    ||||||||    
T  25808110 accacacc 25808103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 160 - 207
Target Start/End: Complemental strand, 34760879 - 34760832
Alignment:
Q  160 aaaccgatctagtttggttttgttcatggtttttcattttgagatccg 207  Q
    |||||||||||||||||||| |||| |||||||| |||||||||||||    
T  34760879 aaaccgatctagtttggtttggttcttggtttttgattttgagatccg 34760832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 160 - 353
Target Start/End: Complemental strand, 3767729 - 3767530
Alignment:
Q  160 aaaccgatctagtttggttttgttcatggtttttcattttgagatccgtgaaactgatgaaccaatccgatgatactcacactccttattttactaatat 259  Q
    |||||||||||||||||||| ||||  ||||||| ||||||||||||    ||| |||||||| | |||||| ||  | ||||||  |||||| ||||||    
T  3767729 aaaccgatctagtttggtttggttctcggttttttattttgagatccaatgaaccgatgaaccgaaccgatgctaacctcactccccattttagtaatat 3767630  T
Q  260 tatcctacctcacaaac-ttatggttaaacccaaaatta------aacataaaatactttttaatcaattcaatttctcccatcttcatctcatctcatc 352  Q
    |||||   |||||| ||  |||| |||||| ||||||||      ||||||||||  |  |||||| ||||| ||||||||||  |||||||||||||||    
T  3767629 tatcccttctcacacacactatgattaaactcaaaattaaagtccaacataaaattatccttaatccattcactttctcccat-atcatctcatctcatc 3767531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 402
Target Start/End: Complemental strand, 25344039 - 25343933
Alignment:
Q  298 aacataaaatactttttaatcaattcaatttctcccatcttcatctcatctcatcagttacactc--tttcattcctactaaaaaagaaaccctagccgt 395  Q
    |||||||| ||||  |||||| ||||| ||||||||||| ||||||||| |||||| | | ||||  ||||||| ||||||||| |  |||||||||| |    
T  25344039 aacataaagtactacttaatccattcactttctcccatcatcatctcatgtcatcactcagactcgatttcatttctactaaaataagaaccctagccat 25343940  T
Q  396 taaccac 402  Q
     ||||||    
T  25343939 caaccac 25343933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 394
Target Start/End: Complemental strand, 34760749 - 34760653
Alignment:
Q  298 aacataaaatactttttaatcaattcaatttctcccatcttcatctcatctcatcagttacactc--tttcattcctactaaaaaagaaaccctagccg 394  Q
    |||||||||||||  ||||||||| || ||||||| ||| ||||||||||||||||  || ||||  ||||||| ||||| |||||||||| |||||||    
T  34760749 aacataaaatactcattaatcaat-cactttctccgatcatcatctcatctcatcacatagactctatttcatttctact-aaaaagaaacactagccg 34760653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 115
Target Start/End: Complemental strand, 7956514 - 7956468
Alignment:
Q  69 ggggtgtaagtggttcgaacaaaatcaacgaaatcgaaagtgcaaac 115  Q
    ||||||||||||||||| |||||| |||||||| ||||||| |||||    
T  7956514 ggggtgtaagtggttcggacaaaaccaacgaaaccgaaagtccaaac 7956468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 160 - 222
Target Start/End: Original strand, 9040525 - 9040587
Alignment:
Q  160 aaaccgatctagtttggttttgttcatggtttttcattttgagatccgtgaaactgatgaacc 222  Q
    |||||||||| ||||||||| ||||  |||||||||||||||||||   ||||| ||||||||    
T  9040525 aaaccgatcttgtttggtttggttctcggtttttcattttgagatctaagaaaccgatgaacc 9040587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 115
Target Start/End: Complemental strand, 44223501 - 44223455
Alignment:
Q  69 ggggtgtaagtggttcgaacaaaatcaacgaaatcgaaagtgcaaac 115  Q
    ||||||||||||||||| |||||| |||||||| ||||||| |||||    
T  44223501 ggggtgtaagtggttcggacaaaaccaacgaaaccgaaagtccaaac 44223455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 264
Target Start/End: Complemental strand, 25344294 - 25344101
Alignment:
Q  71 ggtgtaagtggttcgaacaaaatcaacgaaatcgaaagtgcaaactgaaccaaaccnnnnnnntatcagaccttgtttcgttcggtttgaaaccgatcta 170  Q
    |||||||| |||||| | |||| |||  |||| |||||| |||| |||| ||||||       |||| |||||||| | ||| ||||  |||| |||||     
T  25344294 ggtgtaagcggttcggataaaaccaataaaattgaaagttcaaattgaatcaaaccaaaaatgtatccgaccttgtctggtttggttcaaaactgatctt 25344195  T
Q  171 gtttggttttgttcatggtttttcattttgagatccgtgaaactgatgaaccaatccgatgatactcacactccttattttactaatattatcc 264  Q
    ||||| ||| ||||   ||||||||||||||||| |  ||||| |||||| | | |||||| ||  | ||||||| ||||||||| ||||||||    
T  25344194 gtttgatttggttctcagtttttcattttgagattcaagaaacagatgaatctaaccgatgctaacctcactcctcattttactactattatcc 25344101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 138; Significance: 6e-72; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 157 - 415
Target Start/End: Original strand, 31111523 - 31111783
Alignment:
Q  157 ttgaaaccgatctagtttggttttgttcatggtttttcattttgagatccgtgaaactgatgaaccaatccgatgatactcacactccttattttactaa 256  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||| |||||||| | |||||  |||||| |||||||||||||    
T  31111523 ttgaaaccgatctagtttggtttggttcatggtttttcattttgagatccttgaaaccgataaaccaatctggtgataaccacacttcttattttactaa 31111622  T
Q  257 tattatcctacct--cacaaacttatggttaaacccaaaattaaacataaaatactttttaatcaattcaatttctcccatcttcatctcatctcatcag 354  Q
    |||||||||||||  |||||| |||||||||  | |||||||||| |||||||||||||||||  ||||| |||||| |||||||||||||| | || ||    
T  31111623 tattatcctacctcacacaaaattatggttaggcgcaaaattaaatataaaatactttttaattcattcactttctctcatcttcatctcatttaattag 31111722  T
Q  355 ttacactctttcattcctactaaaaaagaaaccctagccgttaaccacaccaaacccattg 415  Q
    | | ||||||||||| ||||||| ||||||||||||| ||| ||||| |||||||||||||    
T  31111723 tcagactctttcatttctactaagaaagaaaccctagtcgtcaaccataccaaacccattg 31111783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 169 - 426
Target Start/End: Original strand, 4638276 - 4638550
Alignment:
Q  169 tagtttggttttgttcatggtttttcattttgagatccgtgaaactgatgaaccaatccgatgatactcacactcctta----ttttactaatattatcc 264  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||    |||||||||||||||||    
T  4638276 tagtttggtttggttcatggtttttcattttgagatccgtgaaaccgatgaaccaatccgatgataaccacactccttaattcttttactaatattatcc 4638375  T
Q  265 tac-------ctcacaaacttatggttaaacccaaaattaaa------cataaaatactttttaatcaattcaatttctcccatcttcatctcatctcat 351  Q
    | |       | |||||| ||||||||| |||||||||||||      | |||| ||||||| |||| ||||| ||| ||  ||| ||||||||||||||    
T  4638376 tcctcacactcacacaaaattatggttagacccaaaattaaagtccaacttaaactacttttcaatccattcactttttctaatcctcatctcatctcat 4638475  T
Q  352 cagttacactctttcattcctactaaaaaagaaaccctagccgttaaccacaccaaacccattgttcatcgccac 426  Q
     ||| | ||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  4638476 aagtcagactctttcatttctactaaaaaagaaaccctatccgtcaaccacaccaaacccattgttcatcgccac 4638550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 160 - 381
Target Start/End: Complemental strand, 13852342 - 13852130
Alignment:
Q  160 aaaccgatctagtttggttttgttcatggtttttcattttgagatccgtgaaactgatgaaccaatccgatgatactcacactccttattttactaatat 259  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||| | |||||  |||||||||||||||| ||||||    
T  13852342 aaaccgatctagtttggtttggttcatagtttttcattttgagatccgtgaaaccgatgaaccaatctgttgataaccacactccttattttattaatat 13852243  T
Q  260 tatcctacct--cacaaacttatggttaaacccaaaattaaacataaaatactttttaatcaattcaatttctcccatcttcatctcatctcatcagtta 357  Q
    |||| |||||  |||||||||| |||||   |||||||||||||||||||| ||||||||| ||||| ||||           |||||||||||||||||    
T  13852242 tatcttacctcacacaaacttaaggttatgaccaaaattaaacataaaatattttttaatccattcactttc-----------tctcatctcatcagtta 13852154  T
Q  358 cactctttcattcctactaaaaaa 381  Q
     ||||||||||| |||||||||||    
T  13852153 gactctttcatttctactaaaaaa 13852130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 166 - 385
Target Start/End: Original strand, 36009278 - 36009504
Alignment:
Q  166 atctagtttggttttgttcatggtttttcattttgagatccgtgaaactgatgaaccaatccgatgatactcacactccttattttactaatattatcct 265  Q
    |||||||||||||| |||||||||||||||||| ||||||| |||||| |||||| |||||||||||||  |||||||||||||||||||||||||||||    
T  36009278 atctagtttggtttggttcatggtttttcatttcgagatccatgaaaccgatgaatcaatccgatgataaccacactccttattttactaatattatcct 36009377  T
Q  266 acct----------cacaaacttatggttaaacccaaaattaaacataaaatactttttaatcaattcaatttctcccatcttcatctcatctcatcagt 355  Q
    || |          |||||| | |||||||   |||||||||||||||||||| ||||||||| ||||| |||||| ||||||||   |||||||||| |    
T  36009378 acatttctaccttacacaaattcatggttaggtccaaaattaaacataaaataatttttaatccattcactttctctcatcttca---catctcatcatt 36009474  T
Q  356 tacactctttcattcctactaaaaaagaaa 385  Q
     | ||||||||||| |||||||||||||||    
T  36009475 catactctttcatttctactaaaaaagaaa 36009504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 239 - 413
Target Start/End: Original strand, 30340563 - 30340745
Alignment:
Q  239 cactccttattttactaatattatcctacctcacaaacttatggttaaacccaaaatta------aacataaaatactttttaatcaattcaatttctcc 332  Q
    |||||| |||||||||||||||||||  ||||||| ||||||| ||| ||| |||||||      ||||||||||||| ||| ||  ||||| |||||||    
T  30340563 cactccctattttactaatattatccctcctcacacacttatgattagacctaaaattaaagttcaacataaaatactcttttattcattcactttctcc 30340662  T
Q  333 catcttcatctcatctcat--cagttacactctttcattcctactaaaaaagaaaccctagccgttaaccacaccaaacccat 413  Q
    |||  ||||| ||||||||  |    || || ||||||| || |||||||||||||||||||| | ||||||||| |||||||    
T  30340663 cattatcatcacatctcattcctcggactctatttcatttcttctaaaaaagaaaccctagccatcaaccacacctaacccat 30340745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 69 - 163
Target Start/End: Original strand, 31111415 - 31111509
Alignment:
Q  69 ggggtgtaagtggttcgaacaaaatcaacgaaatcgaaagtgcaaactgaaccaaaccnnnnnnntatcagaccttgtttcgttcggtttgaaac 163  Q
    |||||||||||||||   ||||||||||||||| ||||| | |||| |||||||||||       |||| |||||||||| ||||||||||||||    
T  31111415 ggggtgtaagtggtttagacaaaatcaacgaaaccgaaaatccaaattgaaccaaaccgaaaaaatatccgaccttgtttggttcggtttgaaac 31111509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 171 - 405
Target Start/End: Original strand, 38607090 - 38607332
Alignment:
Q  171 gtttggttttgttcatggtttttcattttgagatccgtgaaactgatgaaccaatccgatgatactcacactccttattttactaatattatcctacctc 270  Q
    ||||||||  |||| ||||||||||||||||||||| | |||| |||||||| ||  |||| ||  |||||||   ||||||||||| ||||||  ||||    
T  38607090 gtttggttcggttcttggtttttcattttgagatccataaaaccgatgaaccgatttgatgctaaccacactcgccattttactaatgttatccctcctc 38607189  T
Q  271 ac------aaacttatggttaaacccaaaatta-----aacataaaatactttttaatcaattcaatttctcccatcttcatctcatctcatcagttaca 359  Q
    ||      | ||||||| |||  ||||||||||     ||||||||||||| ||||||| ||||| ||| || |||| ||||||||||    | |  ||     
T  38607190 acacgcaaacacttatgattaggcccaaaattaagtccaacataaaatactatttaatccattcattttatctcatcatcatctcatc---accgagact 38607286  T
Q  360 ctctttcattcctactaaaaaagaaaccctagccgttaaccacacc 405  Q
    || ||| ||| || |||||||||||||||||| |||||||||||||    
T  38607287 ctattttatttcttctaaaaaagaaaccctagtcgttaaccacacc 38607332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 69 - 157
Target Start/End: Complemental strand, 12894097 - 12894009
Alignment:
Q  69 ggggtgtaagtggttcgaacaaaatcaacgaaatcgaaagtgcaaactgaaccaaaccnnnnnnntatcagaccttgtttcgttcggtt 157  Q
    ||||||| ||||||||  |||||| |||||||||| ||||| ||||||||||||||||       |||| |||||||||| ||||||||    
T  12894097 ggggtgtgagtggttcagacaaaaccaacgaaatcaaaagtccaaactgaaccaaaccaaaaatgtatccgaccttgtttggttcggtt 12894009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 124
Target Start/End: Complemental strand, 13852453 - 13852398
Alignment:
Q  69 ggggtgtaagtggttcgaacaaaatcaacgaaatcgaaagtgcaaactgaaccaaa 124  Q
    ||||||||||| ||||| |||||| |||||||||||||||| |||| |||| ||||    
T  13852453 ggggtgtaagtagttcggacaaaaccaacgaaatcgaaagtccaaattgaatcaaa 13852398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 160 - 299
Target Start/End: Original strand, 5526329 - 5526470
Alignment:
Q  160 aaaccgatctagtttggttttgttcatggtttttcattttgagatccgtgaaactgatgaaccaatccgatgatactcacactccttattttactaatat 259  Q
    |||||||||||||||||||  ||||   |||||| ||||||||||||    ||| |||||||| | |||||| || || ||||||  |||||| || |||    
T  5526329 aaaccgatctagtttggttcggttctcagtttttaattttgagatccaaagaacagatgaaccgaaccgatgctaatctcactccccattttagtattat 5526428  T
Q  260 tatcctacct--cacaaacttatggttaaacccaaaattaaa 299  Q
    |||||  |||  |||| ||||||| |||||| ||||||||||    
T  5526429 tatccctccttacacacacttatgattaaactcaaaattaaa 5526470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 137; Significance: 2e-71; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 172 - 393
Target Start/End: Complemental strand, 28319351 - 28319128
Alignment:
Q  172 tttggttttgttcatggtttttcattttgagatccgtgaaactgatgaaccaatccgatgatactcacactccttattttactaatattatcctacctca 271  Q
    |||||||| |||||||||||||||||| ||||| |||||| |||||||| ||||| |||||||  |||||||||||||||||||||||||||||||||||    
T  28319351 tttggtttggttcatggtttttcatttcgagattcgtgaacctgatgaatcaatctgatgataaccacactccttattttactaatattatcctacctca 28319252  T
Q  272 ca--aacttatggttaaacccaaaattaaacataaaatactttttaatcaattcaatttctcccatcttcatctcatctcatcagttacactctttcatt 369  Q
    ||  ||||||||||||  ||||||||||||||||||||| ||||||||||||||| |||||| ||| ||||||||||||||||||| | |||||||| ||    
T  28319251 cacaaacttatggttaggcccaaaattaaacataaaatattttttaatcaattcactttctctcattttcatctcatctcatcagtcagactctttcttt 28319152  T
Q  370 cctactaaaaaagaaaccctagcc 393  Q
     ||||||||| |||||||||||||    
T  28319151 tctactaaaagagaaaccctagcc 28319128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 157 - 338
Target Start/End: Complemental strand, 24466391 - 24466202
Alignment:
Q  157 ttgaaaccgatctagtttggttttgttcatggtttttcattttgagatccgtgaaactgatgaaccaatccgatgatactcacactccttattttactaa 256  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||||||||||    
T  24466391 ttgaaaccgatctagtttgatttggttcatggtttttcattttgagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaa 24466292  T
Q  257 tattatcctacct--cacaaacttatggttaaacccaaaatta------aacataaaatactttttaatcaattcaatttctcccatctt 338  Q
    |||||||||||||  ||||||||||||||||  | ||||||||      ||||||||||||||||||||| ||||| |||||| ||||||    
T  24466291 tattatcctacctcacacaaacttatggttaggctcaaaattaaagtccaacataaaatactttttaatccattcactttctctcatctt 24466202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 159 - 422
Target Start/End: Complemental strand, 23107985 - 23107711
Alignment:
Q  159 gaaaccgatctagtttggttttgttcatggtttttcattttgagatccgtgaaactgatgaacc----aatccgatgatactcacactccttattttact 254  Q
    |||||||||||||||||||||  ||||||||||||||||| |||||||||||||| ||||||||    ||||||||||||  || |||||||||||||||    
T  23107985 gaaaccgatctagtttggtttgattcatggtttttcatttcgagatccgtgaaaccgatgaaccaatcaatccgatgataaccatactccttattttact 23107886  T
Q  255 aatattatcctacct--cacaaacttatggttaaacccaaaatta------aacataaaatactttttaatcaattcaatttctc------ccatcttca 340  Q
    |||||||||||||||  ||||||||||||||||  | ||||||||      ||||||||||||||||||||| ||||| ||||||       ||||||||    
T  23107885 aatattatcctacctcacacaaacttatggttaggctcaaaattaaagtccaacataaaatactttttaatccattcactttctctaatcatcatcttca 23107786  T
Q  341 tctcatctcatcagttacactctttcattcctactaaaaaagaaaccctagccgttaaccacaccaaacccattgttcatcg 422  Q
    |||||||||||| || |       ||||| |||| || ||||||| ||||||||| |||| || |||||||| |||||||||    
T  23107785 tctcatctcatcggtca-------tcatttctaccaagaaagaaatcctagccgtcaaccgcatcaaacccaatgttcatcg 23107711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 159 - 273
Target Start/End: Original strand, 4413566 - 4413680
Alignment:
Q  159 gaaaccgatctagtttggttttgttcatggtttttcattttgagatccgtgaaactgatgaaccaatccgatgatactcacactccttattttactaata 258  Q
    ||||||||||||||||| ||| |||||||||||||||||| |||||||||||||| ||| |||||||||||||||| |||||||||||||||||||| ||    
T  4413566 gaaaccgatctagtttgctttggttcatggtttttcatttcgagatccgtgaaaccgataaaccaatccgatgataatcacactccttattttactagta 4413665  T
Q  259 ttatcctacctcaca 273  Q
    |||||||||||||||    
T  4413666 ttatcctacctcaca 4413680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 313 - 402
Target Start/End: Original strand, 38388177 - 38388268
Alignment:
Q  313 ttaatcaattcaatttctcccatcttcatctcatctcatcagttacactc--tttcattcctactaaaaaagaaaccctagccgttaaccac 402  Q
    |||||||||||| ||||||| ||| |||||||||||||||| | | ||||  ||||||| ||||||||| || |||||||||||||||||||    
T  38388177 ttaatcaattcactttctccaatcatcatctcatctcatcactcagactctatttcatttctactaaaataggaaccctagccgttaaccac 38388268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 69 - 125
Target Start/End: Complemental strand, 23108095 - 23108039
Alignment:
Q  69 ggggtgtaagtggttcgaacaaaatcaacgaaatcgaaagtgcaaactgaaccaaac 125  Q
    ||||||||||||||||| |||||| |||||||| ||||||| ||||| |||||||||    
T  23108095 ggggtgtaagtggttcggacaaaaccaacgaaaccgaaagtccaaaccgaaccaaac 23108039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 126; Significance: 8e-65; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 159 - 426
Target Start/End: Complemental strand, 16746495 - 16746238
Alignment:
Q  159 gaaaccgatctagtttggttttgttcatggtttttcattttgagatccgtgaaactgatgaaccaatccgatgatactcacactccttattttactaata 258  Q
    |||||||||||||||||||||  ||||||||||||||||| |||||||||||||  ||||||||||||||||||||  | ||||||||||||||||||||    
T  16746495 gaaaccgatctagtttggtttgattcatggtttttcatttcgagatccgtgaaatcgatgaaccaatccgatgataacctcactccttattttactaata 16746396  T
Q  259 ttatcctacct--cacaaacttatggttaaacccaaaattaaacataaaatactttttaatcaattcaatttctcccatcttcatctcatctcatcagtt 356  Q
    |||||||||||  ||||||||||||||||  |||            |||||| ||||||||| ||||| ||| || ||| | ||||||||||||||| ||    
T  16746395 ttatcctacctcacacaaacttatggttaggccc------------aaaataatttttaatccattcactttttctcatatccatctcatctcatcattt 16746308  T
Q  357 acactctttcattcctactaaaaaagaaaccctagccgttaaccacaccaaacccattgttcatcgccac 426  Q
    | ||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||    
T  16746307 agactctttcatttctactaaaaaagaaactctagccgtcaaccacaccaaacccattgttcatcaccac 16746238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 165 - 318
Target Start/End: Original strand, 19947826 - 19947981
Alignment:
Q  165 gatctagtttggttttgttcatggtttttcattttgagatccgtgaaactgatgaaccaatccgatgatactcacactccttattttactaatattatcc 264  Q
    |||||| |||| ||| ||||||||||||||||||  ||||||||||||| ||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  19947826 gatctactttgatttggttcatggtttttcatttcaagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaatattatcc 19947925  T
Q  265 tacct--cacaaacttatggttaaacccaaaattaaacataaaatactttttaatc 318  Q
    |||||  ||||||||||||||||  ||||||||||||||||| |||||||||||||    
T  19947926 tacctcacacaaacttatggttaggcccaaaattaaacataagatactttttaatc 19947981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 69 - 426
Target Start/End: Original strand, 31895898 - 31896258
Alignment:
Q  69 ggggtgtaagtggttcgaacaaaatcaacgaaatcgaaagtgcaaactgaaccaaaccnnnnnnntatcagaccttgtttcgttcggtttgaaaccga-- 166  Q
    ||||||||||||||||| |||||| |||| ||||||||||| ||||||||||||||||       |||| |||||||||| |||||||||||||||||      
T  31895898 ggggtgtaagtggttcggacaaaaccaacaaaatcgaaagtccaaactgaaccaaaccgaaaaaatatccgaccttgtttggttcggtttgaaaccgatc 31895997  T
Q  167 ------------------tctagtttggttttgttcatggtttttcattttgagatccgtgaaactgatgaaccaatccgatgatactcacactccttat 248  Q
                      ||||||||||||| ||||||| ||||| |||| | ||||||||||||             ||||||||  ||||||||||||    
T  31895998 tgaaccaatccaaaccgatctagtttggtttggttcatgattttttatttcgtgatccgtgaaac-------------cgatgataaccacactccttat 31896084  T
Q  249 tttactaatattatcctacctcaca--aacttatggttaaacccaaaattaaa------cataaaatactttttaatcaattcaatttctcccatcttca 340  Q
    |||||||||||||||||||||||||  ||||||||||||  ||||||||||||      ||||||||| ||| ||||| ||||| ||||||             
T  31896085 tttactaatattatcctacctcacacaaacttatggttaggcccaaaattaaagtccaacataaaatattttataatccattcactttctc--------- 31896175  T
Q  341 tctcatctcatcagttacactctttcattcctactaaaaaagaaaccctagccgttaaccacaccaaacccattgttcatcgccac 426  Q
      ||||||| ||||| | ||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  31896176 --tcatctcgtcagtca-actctttcatttctactaaaaaagaaaccatagccgtcaaccacaccaaacccattgttcatcgccac 31896258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 159 - 223
Target Start/End: Complemental strand, 16746614 - 16746550
Alignment:
Q  159 gaaaccgatctagtttggttttgttcatggtttttcattttgagatccgtgaaactgatgaacca 223  Q
    |||||||||||||||||||||  ||||||||||||||||| |||||||||||||  |||||||||    
T  16746614 gaaaccgatctagtttggtttgattcatggtttttcatttcgagatccgtgaaatcgatgaacca 16746550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 70 - 168
Target Start/End: Original strand, 19947711 - 19947809
Alignment:
Q  70 gggtgtaagtggttcgaacaaaatcaacgaaatcgaaagtgcaaactgaaccaaaccnnnnnnntatcagaccttgtttcgttcggtttgaaaccgatc 168  Q
    |||||||||||||||| ||||||||||||||  ||||||| ||||| ||||||||||       |||| ||| |||||| |||| ||||||||||||||    
T  19947711 gggtgtaagtggttcggacaaaatcaacgaatccgaaagtccaaaccgaaccaaaccgaaaaaatatccgacattgtttggttcagtttgaaaccgatc 19947809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 418
Target Start/End: Original strand, 17770471 - 17770592
Alignment:
Q  298 aacataaaatactttttaatcaattcaatttctcccatcttcatctcatctcatcagttacactc--tttcattcctactaaaaaagaaaccctagccgt 395  Q
    |||||||||||||  |||||  ||||| ||  || |||| ||||||||||||| || | ||||||  | ||||| |||||||||||| ||| ||||||||    
T  17770471 aacataaaatactccttaattcattcacttcatctcatcctcatctcatctcaccactcacactctatatcatttctactaaaaaag-aacactagccgt 17770569  T
Q  396 taaccacaccaaacccattgttc 418  Q
     ||||||||| ||||||| ||||    
T  17770570 caaccacacctaacccatcgttc 17770592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 114; Significance: 1e-57; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 157 - 426
Target Start/End: Original strand, 7995055 - 7995340
Alignment:
Q  157 ttgaaaccgatctagtttggttttgttcatggtttttcattttgagatccgtgaaactgatgaaccaatccgatgatactcacactccttattttactaa 256  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||| |||  ||||||||||||||||||||    
T  7995055 ttgaaaccgatctagtttggtttggttcatggtttttcattttgagattcgtgaaaccgatgaaccaatccgataataaccacactccttattttactaa 7995154  T
Q  257 tattatcctacctcacaaacttatggttaaacccaaaatta-----aacataaaatactttttaatcaattcaatttctcccatct------------tc 339  Q
    ||||||| |||||||||||||||||||| |  |||||||||     |||||| |||||||||||||| ||||| ||||||  || |            ||    
T  7995155 tattatcttacctcacaaacttatggtt-aggccaaaattaaagtcaacatagaatactttttaatccattcattttctcttatttttatctgacatctc 7995253  T
Q  340 atctcatctcatcagttacactctttcattcctactaaaaaagaaaccctagccgttaaccacaccaaacccattgttcatcgccac 426  Q
    | ||||||| |||||| | || |||||||| |||||| ||||||||||||| | |||||||| | ||||||||||||||||||||||    
T  7995254 aactcatcttatcagtcagaccctttcatttctactacaaaagaaaccctaactgttaaccaaatcaaacccattgttcatcgccac 7995340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 159 - 343
Target Start/End: Complemental strand, 7352443 - 7352258
Alignment:
Q  159 gaaaccgatctagtttggttttgttcatggtttttcattttgagatccgtgaaactgatgaaccaatccgatgatactcacactccttattttactaata 258  Q
    ||||||| ||||||||||||| |||||||||||||||||| |||||||||||||| ||| || |||||||||||||  ||||||||||||||||||||||    
T  7352443 gaaaccggtctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgat-aatcaatccgatgataaccacactccttattttactaata 7352345  T
Q  259 ttatcctacctcaca--aacttatggttaaacccaaaattaaacataaaatactttttaatcaattcaatttctcccatcttcatct 343  Q
    ||||||||| |||||  ||||||| |||| ||||||||||||||||||||||| |||||||| ||||| |||||| |||||||||||    
T  7352344 ttatcctacgtcacacaaacttatagttagacccaaaattaaacataaaatacgttttaatccattcactttctctcatcttcatct 7352258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 159 - 343
Target Start/End: Original strand, 46993360 - 46993552
Alignment:
Q  159 gaaaccgatctagtttggttttgttcatggtttttcattttgagatccgtgaaactgatgaaccaatccgatgatactcacactccttattttactaata 258  Q
    ||||| ||||||||||||||| |||||||||||||||||| |||||||||||||| ||| ||||||||||||||||  ||||||||||||||||||||||    
T  46993360 gaaactgatctagtttggtttggttcatggtttttcatttcgagatccgtgaaaccgattaaccaatccgatgataaccacactccttattttactaata 46993459  T
Q  259 ttatcctacct--cacaaacttatggttaaacccaaaatta------aacataaaatactttttaatcaattcaatttctcccatcttcatct 343  Q
    ||||| |||||  |||||||||| |||||| ||||||||||      ||||||||||||||||||||| |||||||||||| |||||||||||    
T  46993460 ttatcgtacctcacacaaacttaaggttaagcccaaaattaaagtccaacataaaatactttttaatccattcaatttctctcatcttcatct 46993552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 159 - 337
Target Start/End: Original strand, 39695194 - 39695370
Alignment:
Q  159 gaaaccgatctagtttggttttgttcatggtttttcattttgagatccgtgaaactgatgaaccaatccgatgatactcacactccttattttactaata 258  Q
    ||||| ||| ||||||||||| |||||||||||||||||| ||| |||||||||| |||||||||||| |||||||  | |||||||||||||||    |    
T  39695194 gaaactgatatagtttggtttggttcatggtttttcatttcgaggtccgtgaaaccgatgaaccaatctgatgataacctcactccttattttac----a 39695289  T
Q  259 ttatcctacct--cacaaacttatggttaaacccaaaattaaacataaaatactttttaatcaattcaatttctcccatct 337  Q
    ||||| |||||  |||||||||||||||| |||||||||||||||||||||| ||||| ||| ||||| |||||| |||||    
T  39695290 ttatcttacctcacacaaacttatggttagacccaaaattaaacataaaataatttttcatccattcattttctctcatct 39695370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 160 - 234
Target Start/End: Complemental strand, 11727401 - 11727327
Alignment:
Q  160 aaaccgatctagtttggttttgttcatggtttttcattttgagatccgtgaaactgatgaaccaatccgatgata 234  Q
    |||||||||||||||||||| |||| ||||||||||||| ||||||||| |||| ||| ||||||||||||||||    
T  11727401 aaaccgatctagtttggtttggttcgtggtttttcatttcgagatccgtaaaaccgataaaccaatccgatgata 11727327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 298 - 412
Target Start/End: Original strand, 32971489 - 32971605
Alignment:
Q  298 aacataaaatactttttaatcaattcaatttctcccatcttcatctcatctcatcagttacactct--ttcattcctactaaaaaagaaaccctagccgt 395  Q
    |||||||| |||| ||||||| |||||  | || | ||| |||||||||||||||| | | |||||  || ||| || |||||||||||||||||| | |    
T  32971489 aacataaactactctttaatccattcacctacttcaatcatcatctcatctcatcactcaaactctattttatttcttctaaaaaagaaaccctagtcat 32971588  T
Q  396 taaccacaccaaaccca 412  Q
    |||||||||| ||||||    
T  32971589 taaccacacctaaccca 32971605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 270
Target Start/End: Complemental strand, 2197716 - 2197633
Alignment:
Q  187 ggtttttcattttgagatccgtgaaactgatgaaccaatccgatgatactcacactccttattttactaatattatcctacctc 270  Q
    ||||||||||||||||||||  ||||| ||| |||||| |||||| ||    ||||||  ||||||||||||||||||| ||||    
T  2197716 ggtttttcattttgagatccaagaaaccgatcaaccaaaccgatgctaacttcactccccattttactaatattatccttcctc 2197633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 3997126 - 3997069
Alignment:
Q  69 ggggtgtaagtggttcgaacaaaatcaacgaaatcgaaagtgcaaactgaaccaaacc 126  Q
    ||||||||||||||||| |||||| ||| |||| ||||||| ||||| | ||||||||    
T  3997126 ggggtgtaagtggttcggacaaaaccaatgaaaccgaaagtccaaaccgtaccaaacc 3997069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: scaffold0879
Description:

Target: scaffold0879; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 157 - 338
Target Start/End: Complemental strand, 656 - 467
Alignment:
Q  157 ttgaaaccgatctagtttggttttgttcatggtttttcattttgagatccgtgaaactgatgaaccaatccgatgatactcacactccttattttactaa 256  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||||||||||    
T  656 ttgaaaccgatctagtttgatttggttcatggtttttcattttgagatccgtgaaaccgatgaaccaatccgatgataaccacactccttattttactaa 557  T
Q  257 tattatcctacct--cacaaacttatggttaaacccaaaatta------aacataaaatactttttaatcaattcaatttctcccatctt 338  Q
    |||||||||||||  ||||||||||||||||  | ||||||||      ||||||||||||||||||||| ||||| |||||| ||||||    
T  556 tattatcctacctcacacaaacttatggttaggctcaaaattaaagtccaacataaaatactttttaatccattcactttctctcatctt 467  T

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Target: scaffold0565 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 160 - 407
Target Start/End: Complemental strand, 1917 - 1667
Alignment:
Q  160 aaaccgatctagtttggttttgttcatggtttttcattttgagatccgtgaaactgatgaaccaatccgatgatactcacactccttattttactaatat 259  Q
    |||| |||||| |||||||| ||||||||||||| |||| ||||| |||||||| ||||||||||||||||||||   ||||||||||||||||||||||    
T  1917 aaactgatctactttggtttggttcatggtttttaatttcgagattcgtgaaaccgatgaaccaatccgatgataacaacactccttattttactaatat 1818  T
Q  260 tatcctacctcacaaacttatg-----gttaaacccaaaattaaacataaaatactttttaatcaattcaatttctcccatcttcatc-tcatctcatca 353  Q
    ||| ||||||||||||||||||     ||||||   |||||  ||||||||||||||||||||| ||||| |||||| |||| ||||| ||||||| ||     
T  1817 tattctacctcacaaacttatggttaggttaaaattaaaatccaacataaaatactttttaatccattcactttctctcatcatcatcttcatctcttc- 1719  T
Q  354 gttacactctttcattcctactaaaaaagaaaccctagccgttaaccacaccaa 407  Q
     ||| ||||||||||| |||||||||||||||| |||   || |||||||||||    
T  1718 -tta-actctttcatttctactaaaaaagaaactctaagtgtcaaccacaccaa 1667  T

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Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 160 - 298
Target Start/End: Original strand, 46655628 - 46655768
Alignment:
Q  160 aaaccgatctagtttggttttgttcatggtttttcattttgagatccgtgaaactgatgaaccaatccgatgatactcacactccttattttactaatat 259  Q
    ||||| |||||||||||||| ||||||| |||||||||| |||||||||||||| ||||||||||||| ||||||  |||||| ||||||||||||||||    
T  46655628 aaaccaatctagtttggtttggttcatgctttttcatttcgagatccgtgaaaccgatgaaccaatccaatgataaccacacttcttattttactaatat 46655727  T
Q  260 tatcctacct--cacaaacttatggttaaacccaaaattaa 298  Q
    ||||||||||  |||||| |||||||||  |||||||||||    
T  46655728 tatcctacctcacacaaatttatggttaggcccaaaattaa 46655768  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 334 - 426
Target Start/End: Original strand, 2095504 - 2095595
Alignment:
Q  334 atcttcatctcatctcatcagttacactctttcattcctactaaaaaagaaaccctagccgttaaccacaccaaacccattgttcatcgccac 426  Q
    ||||||||| |||||||| ||  | ||||||||||| ||||||||||||||||||||||||  |||||||| |||| ||||||||||||||||    
T  2095504 atcttcatc-catctcattagccagactctttcatttctactaaaaaagaaaccctagccgccaaccacacaaaactcattgttcatcgccac 2095595  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 298 - 405
Target Start/End: Complemental strand, 11503247 - 11503138
Alignment:
Q  298 aacataaaatactttttaatcaattcaatttctcccatcttcatctcatctcatcagttacactct--ttcattcctactaaaaaagaaaccctagccgt 395  Q
    |||||||||||||   ||||| ||||| || ||| |||  | |||||||||||||| | | |||||  |||||| |||||||||||||||||||||| ||    
T  11503247 aacataaaatactacataatccattcacttcctctcatactaatctcatctcatcactcagactctatttcatttctactaaaaaagaaaccctagctgt 11503148  T
Q  396 taaccacacc 405  Q
     |||||||||    
T  11503147 caaccacacc 11503138  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 342 - 405
Target Start/End: Complemental strand, 11690097 - 11690034
Alignment:
Q  342 ctcatctcatcagttacactctttcattcctactaaaaaagaaaccctagccgttaaccacacc 405  Q
    |||||||||||| | | ||||||||||| ||||||||| ||||||| ||| ||| |||||||||    
T  11690097 ctcatctcatcactcaaactctttcatttctactaaaagagaaaccgtagacgtcaaccacacc 11690034  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 70 - 166
Target Start/End: Original strand, 44471020 - 44471116
Alignment:
Q  70 gggtgtaagtggttcgaacaaaatcaacgaaatcgaaagtgcaaactgaaccaaaccnnnnnnntatcagaccttgtttcgttcggtttgaaaccga 166  Q
    |||||||||||||||| |||||| | | |||||||||| | ||||| ||||||||||       |||| |||||||||| ||||||||  |||||||    
T  44471020 gggtgtaagtggttcggacaaaaccgatgaaatcgaaaatccaaaccgaaccaaaccgaaaatgtatccgaccttgtttagttcggttcaaaaccga 44471116  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 160 - 207
Target Start/End: Complemental strand, 44682070 - 44682023
Alignment:
Q  160 aaaccgatctagtttggttttgttcatggtttttcattttgagatccg 207  Q
    |||||||||||||||||||| |||| |||||||| ||||||| |||||    
T  44682070 aaaccgatctagtttggtttggttcttggtttttaattttgaaatccg 44682023  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 384
Target Start/End: Original strand, 44285802 - 44285890
Alignment:
Q  298 aacataaaatactttttaatcaattcaatttctcccatcttcatctcatctcatcagttacactc--tttcattcctactaaaaaagaa 384  Q
    |||||||||||||   ||||  ||||| ||||||||||| || ||||||||||||| | ||||||  |||| || ||||||||||||||    
T  44285802 aacataaaatactccataattcattcactttctcccatcatcgtctcatctcatcattcacactctatttcgtttctactaaaaaagaa 44285890  T

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Target: scaffold0070 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 298 - 402
Target Start/End: Original strand, 33982 - 34088
Alignment:
Q  298 aacataaaatactttttaatcaattcaatttctcccatcttcatctcatctcatcagttacactc--tttcattcctactaaaaaagaaaccctagccgt 395  Q
    |||||||| ||||  |||||| ||||| ||||||||||| ||||||||| |||||| ||| ||||  ||||||| ||||||||| || |||||||||| |    
T  33982 aacataaagtactacttaatccattcactttctcccatcatcatctcatgtcatcacttagactcgatttcatttctactaaaataggaaccctagccat 34081  T
Q  396 taaccac 402  Q
     ||||||    
T  34082 caaccac 34088  T

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Target: scaffold0070; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 300 - 402
Target Start/End: Original strand, 14007 - 14111
Alignment:
Q  300 cataaaatactttttaatcaattcaatttctcccatcttcatctcatctcatcagttacactc--tttcattcctactaaaaaagaaaccctagccgtta 397  Q
    |||||| ||||  |||||| ||||| ||||| ||||| |||||||||||||||| | | ||||  ||||||| ||||||||| || |||||||||| | |    
T  14007 cataaagtactacttaatccattcactttcttccatcatcatctcatctcatcactcagactcgatttcatttctactaaaataggaaccctagccatca 14106  T
Q  398 accac 402  Q
    |||||    
T  14107 accac 14111  T

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Target: scaffold0070; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 204
Target Start/End: Original strand, 33731 - 33866
Alignment:
Q  69 ggggtgtaagtggttcgaacaaaatcaacgaaatcgaaagtgcaaactgaaccaaaccnnnnnnntatcagaccttgtttcgttcggtttgaaaccgatc 168  Q
    ||||||||||||||||| | |||| ||| ||||  |||||| |||| |||||||||||       |||| |||||||| | ||| ||||  |||| ||||    
T  33731 ggggtgtaagtggttcggataaaaccaatgaaactgaaagtccaaattgaaccaaaccgaaaatgtatctgaccttgtctggtttggttcaaaactgatc 33830  T
Q  169 tagtttggttttgttcatggtttttcattttgagat 204  Q
    |  |||||||| ||||   |||||||||||||||||    
T  33831 ttatttggtttggttctcagtttttcattttgagat 33866  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 353
Target Start/End: Original strand, 9826996 - 9827051
Alignment:
Q  298 aacataaaatactttttaatcaattcaatttctcccatcttcatctcatctcatca 353  Q
    |||||||||||||  |||||  ||||| ||||||||||| ||||||||||||||||    
T  9826996 aacataaaatactccttaattcattcactttctcccatcatcatctcatctcatca 9827051  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 384
Target Start/End: Original strand, 5416284 - 5416370
Alignment:
Q  298 aacataaaatactttttaatcaattcaatttctcccatcttcatctcatctcatcagttacactctttcattcctactaaaaaagaa 384  Q
    ||||||||||| | ||||||  ||||| |||||| |||| ||||||||||| |||| | | ||| |||||||  |||||||||||||    
T  5416284 aacataaaatagtctttaattcattcactttctctcatcatcatctcatctaatcattcagactatttcattattactaaaaaagaa 5416370  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 418
Target Start/End: Original strand, 26880030 - 26880155
Alignment:
Q  298 aacataaaatactttttaatcaattcaatttctcccatcttcat---ctcatctcatcagttacactc--tttcattcctactaaaaaagaaaccctagc 392  Q
    |||||||||||||  |||||| ||||| ||||||||||| ||||   ||||||| |||| ||| ||||  ||||||| |  ||| ||||||||||||||     
T  26880030 aacataaaatactcattaatccattcactttctcccatcatcatcaactcatctgatcacttagactctatttcatttcgtctagaaaagaaaccctagt 26880129  T
Q  393 cgttaaccacaccaaacccattgttc 418  Q
    | | ||| ||||| ||||||| ||||    
T  26880130 cctcaactacacctaacccatcgttc 26880155  T

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Target: scaffold0564 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 363
Target Start/End: Original strand, 6564 - 6626
Alignment:
Q  301 ataaaatactttttaatcaattcaatttctcccatcttcatctcatctcatcagttacactct 363  Q
    |||||||||| ||||||  ||||| ||||||||||| ||||| |||||||||| | |||||||    
T  6564 ataaaatactctttaattcattcactttctcccatcatcatcccatctcatcattcacactct 6626  T

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