View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18588_low_12 (Length: 433)
Name: NF18588_low_12
Description: NF18588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18588_low_12 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 10 - 415
Target Start/End: Complemental strand, 34975705 - 34975300
Alignment:
| Q |
10 |
acatcatcaaacacaaaaatatacctctttttctgcaagtactttatcaactcagaaatcaatgcacctcgatccatttcagtgattcctttatgaggtt |
109 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
34975705 |
acatcatcaaacacaaaaacatacctctttttctgcaagtactttctcaactcagaaatcaatgcacctcgatccatttcagtgattcctttaggaggtt |
34975606 |
T |
|
| Q |
110 |
tttctcctttttgttcgtaaagcttctccaacatgtgtctcagcaatacttcagtgttgtatgattgtgacactgtgatccatacacgacattcaaagtg |
209 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34975605 |
tttctcctttttgtccgtaaagcttctccaacatgtgtctcgacaatacttcagtgttgtgtgattgtgacactgtgatccatacacgacattcaaagtg |
34975506 |
T |
|
| Q |
210 |
tcccacaacctctttgctatcaaaaacctttttagcaagagtggtttttccttgccctcccatcccaactacagagatgacagtgcgctctactcttccc |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34975505 |
tcccacaacctctttgctatcaaaaacctttttagcaagagtggtttttccttgccctcccatcccaactacagagatgacagtgcgctctactcttccc |
34975406 |
T |
|
| Q |
310 |
tttaccagccaatcaatcaatctatttttgggttcttgaaagcctacaacttcagcttcatcgatgaataaagcagccattcgtggatcgtgccatttgg |
409 |
Q |
| |
|
||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34975405 |
tttaccaaacaatcaatcaatatttttttgggttcttgaaagcctacaacttcagcttcatcgatgaataaagcagccattcgtggatcgtgccatttgg |
34975306 |
T |
|
| Q |
410 |
catttt |
415 |
Q |
| |
|
|||||| |
|
|
| T |
34975305 |
catttt |
34975300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 10 - 415
Target Start/End: Complemental strand, 34989540 - 34989135
Alignment:
| Q |
10 |
acatcatcaaacacaaaaatatacctctttttctgcaagtactttatcaactcagaaatcaatgcacctcgatccatttcagtgattcctttatgaggtt |
109 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
34989540 |
acatcatcaaacacaaaaacatacctctttttctgcaagtactttctcaactcagaaatcaatgcacctcgatccatttcagtgattcctttaggaggtt |
34989441 |
T |
|
| Q |
110 |
tttctcctttttgttcgtaaagcttctccaacatgtgtctcagcaatacttcagtgttgtatgattgtgacactgtgatccatacacgacattcaaagtg |
209 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34989440 |
tttctcctttttgtccgtaaagcttctccaacatgtgtctcgacaatacttcagtgttgtttgattgtgacactgtgatccatacacgacattcaaagtg |
34989341 |
T |
|
| Q |
210 |
tcccacaacctctttgctatcaaaaacctttttagcaagagtggtttttccttgccctcccatcccaactacagagatgacagtgcgctctactcttccc |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34989340 |
tcccacaacctctttgctatcaaaaacctttttagcaagagtggtttttccttgccctcccatcccaactacagagatgacagtgcgctctactcttccc |
34989241 |
T |
|
| Q |
310 |
tttaccagccaatcaatcaatctatttttgggttcttgaaagcctacaacttcagcttcatcgatgaataaagcagccattcgtggatcgtgccatttgg |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||| |||||||| |
|
|
| T |
34989240 |
tttaccagccaatcaatcaatctatttttgggttcttgaaagcctacgacttcagcttcatcgatgtataaagcagccattcgttgatcgttccatttgg |
34989141 |
T |
|
| Q |
410 |
catttt |
415 |
Q |
| |
|
| |||| |
|
|
| T |
34989140 |
cgtttt |
34989135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 10 - 415
Target Start/End: Complemental strand, 34980485 - 34980078
Alignment:
| Q |
10 |
acatcatcaaacacaaaaatatacctctttttctgcaagtactttatcaactcagaaatcaatgcacctcgatccatttcagtgattcctttatgaggtt |
109 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| ||| |||||||| ||||||||||| ||||||||||||||||||| ||| | |||| | |
|
|
| T |
34980485 |
acatcatcaaacacaaaaacatacctctttttctgcaagtaatttctcaactcataaatcaatgcatctcgatccatttcagtgatatcttcaagaggat |
34980386 |
T |
|
| Q |
110 |
tttctcctttttgttcgtaaagcttctccaacatgtgtctcagcaatacttcagtgttgtatgattgtgacactgtgatccatacacgacattcaaagtg |
209 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34980385 |
gttctcctttttgttcgtaaagcttcttcaacatgcgtctcagcaatacttcaatattgtatgattgtgacactgtgatccatacacgacattcaaagtg |
34980286 |
T |
|
| Q |
210 |
tcccacaacctctttgctatcaaaaacctttttagcaagagtggtttttccttgccctcccatcccaactacagagatg--acagtgcgctctactcttc |
307 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
34980285 |
tcccacaacctctttgctatcaaaaacttttttagcaagagttatttttccttgccctcccattccaactacagagatgacacagtgcgctctactcttc |
34980186 |
T |
|
| Q |
308 |
cctttaccagccaatcaatcaatctatttttgggttcttgaaagcctacaacttcagcttcatcgatgaataaagcagccattcgtggatcgtgccattt |
407 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
34980185 |
cctttaccaaccaatcaatcaatctatttttgggttcttgaaagcctacaacttcagattcgttgatgtataaagcagccattcgtgggtcgtgccattt |
34980086 |
T |
|
| Q |
408 |
ggcatttt |
415 |
Q |
| |
|
|||||||| |
|
|
| T |
34980085 |
ggcatttt |
34980078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 10 - 224
Target Start/End: Original strand, 2305628 - 2305842
Alignment:
| Q |
10 |
acatcatcaaacacaaaaatatacctctttttctgcaagtactttatcaactcagaaatcaatgcacctcgatccatttcagtgattcctttatgaggtt |
109 |
Q |
| |
|
|||| |||||||||||||| ||||||||| ||||||||||||||| |||||||| |||||||| ||||||||||||||||| ||| ||||| | | |
|
|
| T |
2305628 |
acattatcaaacacaaaaacatacctcttattctgcaagtactttctcaactcaaaaatcaattcacctcgatccatttcatagatatctttaggtagaa |
2305727 |
T |
|
| Q |
110 |
tttctcctttttgttcgtaaagcttctccaacatgtgtctcagcaatacttcagtgttgtatgattgtgacactgtgatccatacacgacattcaaagtg |
209 |
Q |
| |
|
|||| |||||||||||| |||||||| ||||||| ||||| ||| ||||| | |||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2305728 |
attctactttttgttcgtgaagcttcttcaacatgcatctcaacaagacttctatattgtatgattgtgacattgtgatccatacacgacattcaaagtg |
2305827 |
T |
|
| Q |
210 |
tcccacaacctcttt |
224 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
2305828 |
tcccacaacctcttt |
2305842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 218; Significance: 1e-119; HSPs: 23)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 10 - 411
Target Start/End: Original strand, 22657209 - 22657610
Alignment:
| Q |
10 |
acatcatcaaacacaaaaatatacctctttttctgcaagtactttatcaactcagaaatcaatgcacctcgatccatttcagtgattcctttatgaggtt |
109 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| ||| ||| ||||||||||||||| |||||||||||||||||||| ||| | |||| | |
|
|
| T |
22657209 |
acatcatcaaacacaaaaacatacctctttttctgcaagtattttctcagctcagaaatcaatgcgcctcgatccatttcagtgatatcttgaggaggat |
22657308 |
T |
|
| Q |
110 |
tttctcctttttgttcgtaaagcttctccaacatgtgtctcagcaatacttcagtgttgtatgattgtgacactgtgatccatacacgacattcaaagtg |
209 |
Q |
| |
|
| ||||||||||||| |||||||| || ||||||| |||||| ||| ||||| | ||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
22657309 |
tgtctcctttttgtttgtaaagctccttcaacatgcgtctcaacaacacttctatattgtaagattgtgacactgtgatccaaacacgacattcaaagtg |
22657408 |
T |
|
| Q |
210 |
tcccacaacctctttgctatcaaaaacctttttagcaagagtggtttttccttgccctcccatcccaactacagagatgacagtgcgctctactcttccc |
309 |
Q |
| |
|
||| |||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||| || || ||||| ||||||||||||||| ||||||| |
|
|
| T |
22657409 |
tccaacaacctctttgctgtcaaaaacttttttagcaagagtagtttttccttgccctcccattcccacgacagatatgacagtgcgctctgatcttccc |
22657508 |
T |
|
| Q |
310 |
tttaccagccaatcaatcaatctatttttgggttcttgaaagcctacaacttcagcttcatcgatgaataaagcagccattcgtggatcgtgccatttgg |
409 |
Q |
| |
|
||||||| |||||| | ||||| ||||||||| |||||||||||| || ||| |||||||| ||| |||||||||||||||| || || |||||||||| |
|
|
| T |
22657509 |
tttaccaaccaatctactaatctttttttgggtgcttgaaagcctataatttccgcttcatcaatgtataaagcagccattcgagggtcatgccatttgg |
22657608 |
T |
|
| Q |
410 |
ca |
411 |
Q |
| |
|
|| |
|
|
| T |
22657609 |
ca |
22657610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 10 - 407
Target Start/End: Original strand, 22621057 - 22621454
Alignment:
| Q |
10 |
acatcatcaaacacaaaaatatacctctttttctgcaagtactttatcaactcagaaatcaatgcacctcgatccatttcagtgattcctttatgaggtt |
109 |
Q |
| |
|
||||||||||| ||||||| ||||||||||| ||||||| ||| |||||| ||||||||||| ||| |||||||||||| ||| ||| | ||| | |
|
|
| T |
22621057 |
acatcatcaaatacaaaaacatacctcttttgttgcaagtggtttctcaacttagaaatcaatgaccctagatccatttcagagatatcttgagaagggt |
22621156 |
T |
|
| Q |
110 |
tttctcctttttgttcgtaaagcttctccaacatgtgtctcagcaatacttcagtgttgtatgattgtgacactgtgatccatacacgacattcaaagtg |
209 |
Q |
| |
|
||||||||||||| ||||| || || |||||||| ||||||||| | || | | |||||||||||||||||||| |||||||||| |||| ||||| |
|
|
| T |
22621157 |
cgtctcctttttgttggtaaatctccttcaacatgtatctcagcaacccctctatatcgtatgattgtgacactgtgacccatacacgatattcgaagtg |
22621256 |
T |
|
| Q |
210 |
tcccacaacctctttgctatcaaaaacctttttagcaagagtggtttttccttgccctcccatcccaactacagagatgacagtgcgctctactcttccc |
309 |
Q |
| |
|
||||| ||||||||||| || ||||||||||| |||||||||| ||||||||| |||||||| || || |||||||||||||| |||||| ||||||| |
|
|
| T |
22621257 |
tcccatgacctctttgctgtcgaaaacctttttggcaagagtggattttccttgtcctcccattcctaccacagagatgacagttcgctcttctcttcca |
22621356 |
T |
|
| Q |
310 |
tttaccagccaatcaatcaatctatttttgggttcttgaaagcctacaacttcagcttcatcgatgaataaagcagccattcgtggatcgtgccattt |
407 |
Q |
| |
|
| |||| | | |||||||||||||||||||||||||||||||||||| ||||| |||||| || |||||||||||||||| || || |||||||| |
|
|
| T |
22621357 |
tccaccaacaatccaatcaatctatttttgggttcttgaaagcctacaatttcagattcatcaatatataaagcagccattcgagggtcatgccattt |
22621454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 17 - 407
Target Start/End: Original strand, 22648309 - 22648698
Alignment:
| Q |
17 |
caaacacaaaaatatacctctttttctgcaagtactttatcaactcagaaatcaatgcacctcgatccatttcagtgattcctttatgaggtttttctcc |
116 |
Q |
| |
|
||||||| |||| ||||||||||| |||||||| ||| ||| |||||||||||| | |||| |||||||| | ||| |||||| |||| | |||||| |
|
|
| T |
22648309 |
caaacacgaaaacatacctcttttgttgcaagtagtttctcagctcagaaatcaacgaccctc-atccattttcgagatacctttaggaggctcttctcc |
22648407 |
T |
|
| Q |
117 |
tttttgttcgtaaagcttctccaacatgtgtctcagcaatacttcagtgttgtatgattgtgacactgtgatccatacacgacattcaaagtgtcccaca |
216 |
Q |
| |
|
|||||||| |||||||| | ||||||| ||||||||| |||| || | ||||||||| ||||| |||||||||||||| |||||||||||||| | |
|
|
| T |
22648408 |
tttttgtttgtaaagctcattcaacatgcctctcagcaacccttctgtatagtatgattgcaacactttgatccatacacgaaattcaaagtgtcccgct |
22648507 |
T |
|
| Q |
217 |
acctctttgctatcaaaaacctttttagcaagagtggtttttccttgccctcccatcccaactacagagatgacagtgcgctctactcttccctttacca |
316 |
Q |
| |
|
||||||||||| ||||| || ||| | |||||||||||||||||| |||||||||| || || ||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
22648508 |
acctctttgctgtcaaacacttttctggcaagagtggtttttcctagccctcccatacctaccacagagatgacagtgcgctctgatcttccctctacca |
22648607 |
T |
|
| Q |
317 |
gccaatcaatcaatctatttttgggttcttgaaagcctacaacttcagcttcatcgatgaataaagcagccattcgtggatcgtgccattt |
407 |
Q |
| |
|
|||| |||||| | ||| | ||| |||||| |||||| | ||| |||||| | ||| ||||||||||| |||| || || |||||||| |
|
|
| T |
22648608 |
accaaccaatcatttgttttcttggtgcttgaaggcctaccatttctgcttcaccaatgtataaagcagccgttcgagggtcatgccattt |
22648698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 112 - 413
Target Start/End: Complemental strand, 22187209 - 22186908
Alignment:
| Q |
112 |
tctcctttttgttcgtaaagcttctccaacatgtgtctcagcaatacttcagtgttgtatgattgtgacactgtgatccatacacgacattcaaagtgtc |
211 |
Q |
| |
|
||||||||||||| | ||| ||| |||||||| ||||| |||| |||||| || |||||||| |||||||| |||||||||||||| |||||||||| |
|
|
| T |
22187209 |
tctcctttttgtttgcaaacctttagcaacatgtctctcaacaatccttcagaattatatgattgagacactgtaatccatacacgacaatcaaagtgtc |
22187110 |
T |
|
| Q |
212 |
ccacaacctctttgctatcaaaaacctttttagcaagagtggtttttccttgccctcccatcccaactacagagatgacagtgcgctctactcttccctt |
311 |
Q |
| |
|
||| | || ||||| |||||||| || || || ||||| |||||||||||||||||||| || || ||||| | |||||||||||| | |||||||| |
|
|
| T |
22187109 |
ccatgatatccttgctgtcaaaaactttcttggctagagttgtttttccttgccctcccattcctaccacagaaagaacagtgcgctcttcccttccctt |
22187010 |
T |
|
| Q |
312 |
taccagccaatcaatcaatctatttttgggttcttgaaagcctacaacttcagcttcatcgatgaataaagcagccattcgtggatcgtgccatttggca |
411 |
Q |
| |
|
||||| ||| ||||||||||| ||| | || ||| ||| || ||||| |||||||| |||||| | | |||||||| ||| || |||| ||||| |||| |
|
|
| T |
22187009 |
taccatccactcaatcaatctttttcttggcgcttcaaatcccacaacctcagcttcctcgatgtaaagagcagccactcgagggtcgttccattcggca |
22186910 |
T |
|
| Q |
412 |
tt |
413 |
Q |
| |
|
|| |
|
|
| T |
22186909 |
tt |
22186908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 113 - 413
Target Start/End: Complemental strand, 22028220 - 22027920
Alignment:
| Q |
113 |
ctcctttttgttcgtaaagcttctccaacatgtgtctcagcaatacttcagtgttgtatgattgtgacactgtgatccatacacgacattcaaagtgtcc |
212 |
Q |
| |
|
|||||||||||| | ||| ||| |||||||| ||||| |||| |||||| || |||||||| |||||||| |||||||||||||| ||||||||||| |
|
|
| T |
22028220 |
ctcctttttgtttgcaaacctttagcaacatgtctctcaacaatccttcagaattatatgattgagacactgtaatccatacacgacaatcaaagtgtcc |
22028121 |
T |
|
| Q |
213 |
cacaacctctttgctatcaaaaacctttttagcaagagtggtttttccttgccctcccatcccaactacagagatgacagtgcgctctactcttcccttt |
312 |
Q |
| |
|
|| | || ||||| |||||||| || || || ||||| |||||||||||||||||||| || || ||||| | |||||||||||| | ||||||| | |
|
|
| T |
22028120 |
catgatatccttgctgtcaaaaactttcttggctagagttgtttttccttgccctcccattcctaccacagacaccacagtgcgctcttcccttccctgt |
22028021 |
T |
|
| Q |
313 |
accagccaatcaatcaatctatttttgggttcttgaaagcctacaacttcagcttcatcgatgaataaagcagccattcgtggatcgtgccatttggcat |
412 |
Q |
| |
|
|||| ||||||| ||||||| ||| | || ||| ||| || ||||| |||||||| |||||| | | |||||||| ||| || |||| ||||||||||| |
|
|
| T |
22028020 |
accaaccaatcagtcaatctttttcttggcgcttcaaatcccacaacctcagcttcctcgatgtaaagagcagccactcgagggtcgttccatttggcat |
22027921 |
T |
|
| Q |
413 |
t |
413 |
Q |
| |
|
| |
|
|
| T |
22027920 |
t |
22027920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 167 - 316
Target Start/End: Original strand, 22615559 - 22615708
Alignment:
| Q |
167 |
tgtatgattgtgacactgtgatccatacacgacattcaaagtgtcccacaacctctttgctatcaaaaacctttttagcaagagtggtttttccttgccc |
266 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||| || || |||||||||||||| || ||||| |
|
|
| T |
22615559 |
tgtatgattgagacactgtgatccatacacgacaatcaaagtgtccacaaacctccttgctatcaaaaacattcttggcaagagtggttttaccctgccc |
22615658 |
T |
|
| Q |
267 |
tcccatcccaactacagagatgacagtgcgctctactcttccctttacca |
316 |
Q |
| |
|
|||||| || || ||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
22615659 |
tcccattcccaccacagagacaacagtgcgctctactcttccttttacca |
22615708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 169 - 413
Target Start/End: Complemental strand, 22115249 - 22115005
Alignment:
| Q |
169 |
tatgattgtgacactgtgatccatacacgacattcaaagtgtcccacaacctctttgctatcaaaaacctttttagcaagagtggtttttccttgccctc |
268 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||||||| | | || ||||| |||||||| || || | |||||||||||||||||||||| |
|
|
| T |
22115249 |
tatgattgagacactgtgatccatacacgacaatcaaagtgtccaatgatatccttgctgtcaaaaactttctttgatagagtggtttttccttgccctc |
22115150 |
T |
|
| Q |
269 |
ccatcccaactacagagatgacagtgcgctctactcttccctttaccagccaatcaatcaatctatttttgggttcttgaaagcctacaacttcagcttc |
368 |
Q |
| |
|
|||| || || ||||| | |||||||||||| | ||||||| ||||| ||||||||||||||| | | | ||| ||| ||| || ||||| |||||||| |
|
|
| T |
22115149 |
ccattcctaccacagaaagaacagtgcgctcttcccttccctataccatccaatcaatcaatctttgtcttggtgcttcaaatcccacaacctcagcttc |
22115050 |
T |
|
| Q |
369 |
atcgatgaataaagcagccattcgtggatcgtgccatttggcatt |
413 |
Q |
| |
|
|| | | | | |||||||| ||| || ||||||||||||||||| |
|
|
| T |
22115049 |
ctcaacgtaaagagcagccactcgagggtcgtgccatttggcatt |
22115005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 169 - 329
Target Start/End: Complemental strand, 21937317 - 21937157
Alignment:
| Q |
169 |
tatgattgtgacactgtgatccatacacgacattcaaagtgtcccacaacctctttgctatcaaaaacctttttagcaagagtggtttttccttgccctc |
268 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||| ||||||||||| || || || ||||| |||||| | || ||||| |||||||||||||||||||||| |
|
|
| T |
21937317 |
tatgcttgagacactgtgatccatacacgacaatcaaagtgtccaacgacatccttgctgtcaaaagctttcttagctagagtggtttttccttgccctc |
21937218 |
T |
|
| Q |
269 |
ccatcccaactacagagatgacagtgcgctctactcttccctttaccagccaatcaatcaa |
329 |
Q |
| |
|
|||| || || ||||| | |||||||||||| | |||||||||| || |||||||||||| |
|
|
| T |
21937217 |
ccattcctaccacagaaacaacagtgcgctctgcccttccctttatcatccaatcaatcaa |
21937157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 138 - 413
Target Start/End: Complemental strand, 22034712 - 22034437
Alignment:
| Q |
138 |
caacatgtgtctcagcaatacttcagtgttgtatgattgtgacactgtgatccatacacgacattcaaagtgtcccacaacctctttgctatcaaaaacc |
237 |
Q |
| |
|
|||||||| ||||| |||| |||||| || |||||||| |||||||| |||||||||||| | ||||||||||||| | || ||||| |||||||| |
|
|
| T |
22034712 |
caacatgtctctcaacaatccttcagaattatatgattgagacactgtaatccatacacgataatcaaagtgtcccatgatatccttgctgtcaaaaact |
22034613 |
T |
|
| Q |
238 |
tttttagcaagagtggtttttccttgccctcccatcccaactacagagatgacagtgcgctctactcttccctttaccagccaatcaatcaatctatttt |
337 |
Q |
| |
|
|| || || ||||| |||||||||||||||||||| || || ||||| | |||||||||||| | ||||||| ||||| ||||||||||||||| | | |
|
|
| T |
22034612 |
ttcttggctagagttgtttttccttgccctcccattcctaccacagacaccacagtgcgctcttcccttccctgtaccatccaatcaatcaatctttgtc |
22034513 |
T |
|
| Q |
338 |
tgggttcttgaaagcctacaacttcagcttcatcgatgaataaagcagccattcgtggatcgtgccatttggcatt |
413 |
Q |
| |
|
| ||| ||| ||| || ||||| |||| ||| || | | | | |||||| | ||| || ||||||||||||||||| |
|
|
| T |
22034512 |
ttggtgcttcaaatcccacaacctcagtttcctcaacgtaaagagcagcgactcgagggtcgtgccatttggcatt |
22034437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 113 - 409
Target Start/End: Complemental strand, 22179637 - 22179341
Alignment:
| Q |
113 |
ctcctttttgttcgtaaagcttctccaacatgtgtctcagcaatacttcagtgttgtatgattgtgacactgtgatccatacacgacattcaaagtgtcc |
212 |
Q |
| |
|
|||||||||||| | ||| ||| |||||||| ||||| |||| |||||| || |||||||| |||||||| |||||||||||||| ||||||||||| |
|
|
| T |
22179637 |
ctcctttttgtttgcaaatctttagcaacatgtctctcaacaatccttcagcattatatgattgagacactgtaatccatacacgacaatcaaagtgtcc |
22179538 |
T |
|
| Q |
213 |
cacaacctctttgctatcaaaaacctttttagcaagagtggtttttccttgccctcccatcccaactacagagatgacagtgcgctctactcttcccttt |
312 |
Q |
| |
|
| | || ||||| |||||||| || || || ||||| |||||||||||||||||||| || || || | | |||||||||||| ||||||| | |
|
|
| T |
22179537 |
aatgatatccttgctgtcaaaaactttcttggctagagttgtttttccttgccctcccattcccaccacgaataccacagtgcgctctttccttccctgt |
22179438 |
T |
|
| Q |
313 |
accagccaatcaatcaatctatttttgggttcttgaaagcctacaacttcagcttcatcgatgaataaagcagccattcgtggatcgtgccatttgg |
409 |
Q |
| |
|
|||| ||||||||||||||| ||| | || ||| ||| || ||||| |||||||| |||| | | | ||||||| |||| || ||||||||||||| |
|
|
| T |
22179437 |
accatccaatcaatcaatctttttcttggcgcttcaaatcccacaacctcagcttcctcgacgtaaagagcagcctttcgagggtcgtgccatttgg |
22179341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 178 - 414
Target Start/End: Complemental strand, 22104878 - 22104642
Alignment:
| Q |
178 |
gacactgtgatccatacacgacattcaaagtgtcccacaacctctttgctatcaaaaacctttttagcaagagtggtttttccttgccctcccatcccaa |
277 |
Q |
| |
|
|||||||||||||| ||| |||| ||||||||||| | || || ||||| |||||||| | || || ||||| |||||||||||||||||||| || | |
|
|
| T |
22104878 |
gacactgtgatccaaacatgacaatcaaagtgtccaattacatccttgctgtcaaaaactctcttggctagagttgtttttccttgccctcccattccta |
22104779 |
T |
|
| Q |
278 |
ctacagagatgacagtgcgctctactcttccctttaccagccaatcaatcaatctatttttgggttcttgaaagcctacaacttcagcttcatcgatgaa |
377 |
Q |
| |
|
| || || | |||||||||||| | |||||||||||| ||||||||||||||| ||| | ||| ||| || || ||||| |||||||| || ||| | |
|
|
| T |
22104778 |
ccaccgaaactacagtgcgctcttccgttccctttaccatccaatcaatcaatctttttcttggtgctttgaatcccacaacatcagcttcctcaatgta |
22104679 |
T |
|
| Q |
378 |
taaagcagccattcgtggatcgtgccatttggcattt |
414 |
Q |
| |
|
| |||||| | ||| || |||||||||||||||||| |
|
|
| T |
22104678 |
aagagcagcaactcgagggtcgtgccatttggcattt |
22104642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 169 - 329
Target Start/End: Original strand, 30989607 - 30989767
Alignment:
| Q |
169 |
tatgattgtgacactgtgatccatacacgacattcaaagtgtcccacaacctctttgctatcaaaaacctttttagcaagagtggtttttccttgccctc |
268 |
Q |
| |
|
|||||||| |||||| |||||||||||||||| ||||||||||| | || | || | |||||||| || || | |||||||||||| |||||||||| |
|
|
| T |
30989607 |
tatgattgagacactatgatccatacacgacaatcaaagtgtccaatgacattcctgttgtcaaaaactttcttcgtaagagtggttttaccttgccctc |
30989706 |
T |
|
| Q |
269 |
ccatcccaactacagagatgacagtgcgctctactcttccctttaccagccaatcaatcaa |
329 |
Q |
| |
|
|||| || |||||||| || || |||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
30989707 |
ccatgcctactacagaaattaccgtgcgctcatctcttccctttaccaaccaatcaatcaa |
30989767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 169 - 368
Target Start/End: Complemental strand, 22052897 - 22052698
Alignment:
| Q |
169 |
tatgattgtgacactgtgatccatacacgacattcaaagtgtcccacaacctctttgctatcaaaaacctttttagcaagagtggtttttccttgccctc |
268 |
Q |
| |
|
|||||||| |||||||| |||||||| ||||| ||||| ||||| | | || ||||| |||||||| || || || ||||| |||||||||||||||| |
|
|
| T |
22052897 |
tatgattgagacactgtaatccatacccgacaatcaaaatgtccaatgatatccttgctgtcaaaaactttcttggctagagttgtttttccttgccctc |
22052798 |
T |
|
| Q |
269 |
ccatcccaactacagagatgacagtgcgctctactcttccctttaccagccaatcaatcaatctatttttgggttcttgaaagcctacaacttcagcttc |
368 |
Q |
| |
|
|||| || || | ||| | |||||||||||| | ||||||||||||| ||||||||||||||| ||| | ||| ||| ||| || ||||| |||||||| |
|
|
| T |
22052797 |
ccattcctaccagagaaaccacagtgcgctcttcccttccctttaccatccaatcaatcaatctttttcttggtacttcaaatcccacaacctcagcttc |
22052698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 178 - 300
Target Start/End: Complemental strand, 22208175 - 22208053
Alignment:
| Q |
178 |
gacactgtgatccatacacgacattcaaagtgtcccacaacctctttgctatcaaaaacctttttagcaagagtggtttttccttgccctcccatcccaa |
277 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||| | |||||||||||| |||||||| | || |||||||| ||||| ||||||||||||||||||| |
|
|
| T |
22208175 |
gacactgtgatccatacacgacaatcaaagtatccaataacctctttgctgtcaaaaacttgcttggcaagagttgttttaccttgccctcccatcccaa |
22208076 |
T |
|
| Q |
278 |
ctacagagatgacagtgcgctct |
300 |
Q |
| |
|
| || |||| |||||| ||||| |
|
|
| T |
22208075 |
ccaccgagacaacagtgagctct |
22208053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 104 - 329
Target Start/End: Complemental strand, 21945853 - 21945628
Alignment:
| Q |
104 |
gaggtttttctcctttttgttcgtaaagcttctccaacatgtgtctcagcaatacttcagtgttgtatgattgtgacactgtgatccatacacgacattc |
203 |
Q |
| |
|
||||||| ||||||||||||| || ||| || |||||||| |||| |||| ||||| | |||||||| ||||| |||||||||||| |||| || |
|
|
| T |
21945853 |
gaggtttgtctcctttttgtttgtgaagttttagcaacatgtccctcaacaatccttcaacatcatatgattgagacacagtgatccatacaagacaatc |
21945754 |
T |
|
| Q |
204 |
aaagtgtcccacaacctctttgctatcaaaaacctttttagcaagagtggtttttccttgccctcccatcccaactacagagatgacagtgcgctctact |
303 |
Q |
| |
|
|||||||| | || || ||||| |||||||| || || || |||||||||||||||||||||||||| || || || || | ||||||||||| | |
|
|
| T |
21945753 |
aaagtgtcaaatgacatccttgctgtcaaaaactttcttggctagagtggtttttccttgccctcccattcctaccacggaaactacagtgcgctcctcc |
21945654 |
T |
|
| Q |
304 |
cttccctttaccagccaatcaatcaa |
329 |
Q |
| |
|
||||||||||||| |||||||||||| |
|
|
| T |
21945653 |
cttccctttaccatccaatcaatcaa |
21945628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 169 - 408
Target Start/End: Complemental strand, 21930585 - 21930346
Alignment:
| Q |
169 |
tatgattgtgacactgtgatccatacacgacattcaaagtgtcccacaacctctttgctatcaaaaacctttttagcaagagtggtttttccttgccctc |
268 |
Q |
| |
|
|||||||| ||||||||||||||||| || | | ||| ||||| | | || ||||| |||||||| || || || ||||| |||||||||||||||| |
|
|
| T |
21930585 |
tatgattgagacactgtgatccatactcggaaatgaaaatgtccaatgatatccttgctgtcaaaaactttcttggctagagttgtttttccttgccctc |
21930486 |
T |
|
| Q |
269 |
ccatcccaactacagagatgacagtgcgctctactcttccctttaccagccaatcaatcaatctatttttgggttcttgaaagcctacaacttcagcttc |
368 |
Q |
| |
|
|||| || || ||||| | |||||||||||| | ||||||| ||||| ||||||||||||| | ||| | ||| ||| ||| || ||||| |||||||| |
|
|
| T |
21930485 |
ccattcctaccacagacaccacagtgcgctcttcccttccctgtaccatccaatcaatcaatatttttcttggtgcttcaaatcccacaacctcagcttc |
21930386 |
T |
|
| Q |
369 |
atcgatgaataaagcagccattcgtggatcgtgccatttg |
408 |
Q |
| |
|
|||| | | | |||||||| ||| || |||||||||||| |
|
|
| T |
21930385 |
ctcgacgtacagagcagccactcgagggtcgtgccatttg |
21930346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 113 - 270
Target Start/End: Original strand, 22458735 - 22458892
Alignment:
| Q |
113 |
ctcctttttgttcgtaaagcttctccaacatgtgtctcagcaatacttcagtgttgtatgattgtgacactgtgatccatacacgacattcaaagtgtcc |
212 |
Q |
| |
|
|||||| ||||||||||| ||| | || ||||| |||||||| |||| | ||||||||||| |||||| ||||||||||| |||| ||||||||| |
|
|
| T |
22458735 |
ctccttgttgttcgtaaaacttgtgcagcatgtccctcagcaagccttctatattgtatgattgagacactctgatccatacatgacaatcaaagtgttt |
22458834 |
T |
|
| Q |
213 |
cacaacctctttgctatcaaaaacctttttagcaagagtggtttttccttgccctccc |
270 |
Q |
| |
|
|| | || ||| ||||||||||| || |||||||| ||||||||||| |||||| |
|
|
| T |
22458835 |
aacgatcttgttgtcgtcaaaaaccttctttgcaagagttgtttttccttgtcctccc |
22458892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 113 - 270
Target Start/End: Original strand, 22481716 - 22481873
Alignment:
| Q |
113 |
ctcctttttgttcgtaaagcttctccaacatgtgtctcagcaatacttcagtgttgtatgattgtgacactgtgatccatacacgacattcaaagtgtcc |
212 |
Q |
| |
|
|||||| ||||||||||| ||| | || ||||| |||||||| |||| | ||||||||||| |||||| ||||||||||| |||| ||||||||| |
|
|
| T |
22481716 |
ctccttgttgttcgtaaaacttgtgcagcatgtccctcagcaagccttctatattgtatgattgagacactctgatccatacatgacaatcaaagtgttt |
22481815 |
T |
|
| Q |
213 |
cacaacctctttgctatcaaaaacctttttagcaagagtggtttttccttgccctccc |
270 |
Q |
| |
|
|| | || ||| ||||||||||| || |||||||| ||||||||||| |||||| |
|
|
| T |
22481816 |
aacgatcttgttgtcgtcaaaaaccttctttgcaagagttgtttttccttgtcctccc |
22481873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 247 - 330
Target Start/End: Original strand, 18967365 - 18967448
Alignment:
| Q |
247 |
agagtggtttttccttgccctcccatcccaactacagagatgacagtgcgctctactcttccctttaccagccaatcaatcaat |
330 |
Q |
| |
|
||||| |||||||||||||||||||| || || |||||||||| ||||| |||| |||| ||||| |||| |||| ||||||| |
|
|
| T |
18967365 |
agagttgtttttccttgccctcccattcctaccacagagatgatagtgccctcttctctccccttcaccatccaactaatcaat |
18967448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 167 - 370
Target Start/End: Original strand, 22436934 - 22437137
Alignment:
| Q |
167 |
tgtatgattgtgacactgtgatccatacacgacattcaaagtgtcccacaacctctttgctatcaaaaacctttttagcaagagtggtttttccttgccc |
266 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||| ||||| ||| | || | || | |||||||| || || || ||||| |||||||||||||| |
|
|
| T |
22436934 |
tgtatgattgagacactgtgatccatacatgacagtcaaattgttttaagactttgatgttctcaaaaactttcttggccagagtagtttttccttgccc |
22437033 |
T |
|
| Q |
267 |
tcccatcccaactacagagatgacagtgcgctctactcttccctttaccagccaatcaatcaatctatttttgggttcttgaaagcctacaacttcagct |
366 |
Q |
| |
|
|||||| || || | ||||| || | ||||||||||||||| | |||||||||| || |||| | |||||| |||| |||||| || || |||||| |
|
|
| T |
22437034 |
tcccattcctacaatagagacaactgcacgctctactcttcccctcaccagccaattaaacaatatgcgtttgggctcttcaaagcccacgacatcagct |
22437133 |
T |
|
| Q |
367 |
tcat |
370 |
Q |
| |
|
|||| |
|
|
| T |
22437134 |
tcat |
22437137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 330
Target Start/End: Original strand, 22468259 - 22468411
Alignment:
| Q |
178 |
gacactgtgatccatacacgacattcaaagtgtcccacaacctctttgctatcaaaaacctttttagcaagagtggtttttccttgccctcccatcccaa |
277 |
Q |
| |
|
||||| |||||||||||| |||| ||||| ||| || |||| || | | |||||||| || || || | |||||||||||| | |||||||| |||| |
|
|
| T |
22468259 |
gacaccgtgatccatacatgacaatcaaaatgtttaacgaccttttggttgtcaaaaactttcttggctatagtggtttttcccagtcctcccattccaa |
22468358 |
T |
|
| Q |
278 |
ctacagagatgacagtgcgctctactcttccctttaccagccaatcaatcaat |
330 |
Q |
| |
|
||| |||| || ||||||||| ||||||||| ||||| | ||||||||||| |
|
|
| T |
22468359 |
ctatggagacaacggtgcgctctgctcttccctctaccaacaaatcaatcaat |
22468411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 88
Target Start/End: Complemental strand, 21930744 - 21930666
Alignment:
| Q |
10 |
acatcatcaaacacaaaaatatacctctttttctgcaagtactttatcaactcagaaatcaatgcacctcgatccattt |
88 |
Q |
| |
|
|||||||||||||| | || ||||||||||||||||||| | ||| ||| |||| | |||||| ||||||||||||| |
|
|
| T |
21930744 |
acatcatcaaacacgacaacatacctctttttctgcaagcattttctcacttcagcagtcaatgatcctcgatccattt |
21930666 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 244 - 330
Target Start/End: Original strand, 22630816 - 22630902
Alignment:
| Q |
244 |
gcaagagtggtttttccttgccctcccatcccaactacagagatgacagtgcgctctactcttccctttaccagccaatcaatcaat |
330 |
Q |
| |
|
|||||||||||||| || | |||||||| ||||| | ||||| || ||||| ||| ||||||||| || |||||||||||||||| |
|
|
| T |
22630816 |
gcaagagtggttttccccagtcctcccattccaacaatagagacaactgtgcgttctgctcttccctctatcagccaatcaatcaat |
22630902 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 173 - 325
Target Start/End: Complemental strand, 27294708 - 27294556
Alignment:
| Q |
173 |
attgtgacactgtgatccatacacgacattcaaagtgtcccacaacctctttgctatcaaaaacctttttagcaagagtggtttttccttgccctcccat |
272 |
Q |
| |
|
|||| ||||||||||||||||||||| | |||| |||||| | || || ||||| |||||||| || || | ||||||||||||||||| |||||||| |
|
|
| T |
27294708 |
attgagacactgtgatccatacacgatagtcaaggtgtccgatgacatccttgctgtcaaaaactttcttgactagagtggtttttccttgtcctcccat |
27294609 |
T |
|
| Q |
273 |
cccaactacagagatgacagtgcgctctactcttccctttaccagccaatcaa |
325 |
Q |
| |
|
|| || ||||| | ||||||| |||| ||||||||||||| |||||||| |
|
|
| T |
27294608 |
tcctaccacagaaactacagtgccctctttccttccctttaccatccaatcaa |
27294556 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 413
Target Start/End: Original strand, 872988 - 873108
Alignment:
| Q |
293 |
tgcgctctactcttccctttaccagccaatcaatcaatctatttttgggttcttgaaagcctacaacttcagcttcatcgatgaataaagcagccattcg |
392 |
Q |
| |
|
|||||||| | ||||||||||||| || || || |||||| ||| | || || |||||| |||||| |||||||||| ||| | | |||||||| ||| |
|
|
| T |
872988 |
tgcgctcttcccttccctttaccatcctataaaccaatctttttcttggcatttcaaagcccacaactccagcttcatcaatgtaaagagcagccactcg |
873087 |
T |
|
| Q |
393 |
tggatcgtgccatttggcatt |
413 |
Q |
| |
|
|| ||||||||||||||||| |
|
|
| T |
873088 |
agggtcgtgccatttggcatt |
873108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 413
Target Start/End: Original strand, 1234265 - 1234385
Alignment:
| Q |
293 |
tgcgctctactcttccctttaccagccaatcaatcaatctatttttgggttcttgaaagcctacaacttcagcttcatcgatgaataaagcagccattcg |
392 |
Q |
| |
|
|||||||| | ||||||||||||| || || || |||||| ||| | || || |||||| |||||| |||||||||| ||| | | |||||||| ||| |
|
|
| T |
1234265 |
tgcgctcttcccttccctttaccatcctataaaccaatctttttcttggcatttcaaagcccacaactccagcttcatcaatgtaaagagcagccactcg |
1234364 |
T |
|
| Q |
393 |
tggatcgtgccatttggcatt |
413 |
Q |
| |
|
|| ||||||||||||||||| |
|
|
| T |
1234365 |
agggtcgtgccatttggcatt |
1234385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 112 - 198
Target Start/End: Original strand, 29610815 - 29610902
Alignment:
| Q |
112 |
tctcctttttgttcgtaaag-cttctccaacatgtgtctcagcaatacttcagtgttgtatgattgtgacactgtgatccatacacga |
198 |
Q |
| |
|
||||| ||||||| ||||| ||||||||||||| || |||||| |||| | |||||||||||||| |||||||||||||||||| |
|
|
| T |
29610815 |
tctcccttttgtttgtaaaaacttctccaacatgccccttagcaatccttctatattgtatgattgtgatactgtgatccatacacga |
29610902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 371
Target Start/End: Original strand, 29610973 - 29611060
Alignment:
| Q |
283 |
gagatgacagtgcgctctactcttccctttaccagccaatcaatcaatctatttttgggttcttgaaagcctacaacttcagcttcatc |
371 |
Q |
| |
|
|||| ||| ||||||||| |||||||||| |||||||||||||| ||| | | | | || |||| ||||||| |||| ||||||||||| |
|
|
| T |
29610973 |
gagacgactgtgcgctctgctcttccctt-accagccaatcaattaatatttctcttggctcttcaaagcctgcaacgtcagcttcatc |
29611060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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