View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18588_low_13 (Length: 423)
Name: NF18588_low_13
Description: NF18588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18588_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 405
Target Start/End: Original strand, 20422747 - 20423152
Alignment:
| Q |
1 |
aagggtaactgaacctaattactttatttcctatctcatcaatttttctcttcattttgtatgttaaatttttctcttaaaactannnnnnnnnctaaca |
100 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||| |
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| T |
20422747 |
aagggtaactgaacctaattactttatttcctgtctcatcaatttttctcttcattttgtatgttaaatttatctcttgaaactatttttttt-ctaaca |
20422845 |
T |
|
| Q |
101 |
aaccacagtgactcataattcagattgacacactcagatcttgctgaaattgtagaatagtcttcaaacatttcaactttaattgacaaaacaaat--ga |
198 |
Q |
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|| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||| || |
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| T |
20422846 |
aaacagagtgactcataattcagattgacacactcagatcttgcagaaattgtagaatagtcttcaaacatttcaactttaattgaaaaaaaaaatatga |
20422945 |
T |
|
| Q |
199 |
aattttgccttagcaatagtgacatcattcttattaggcatatcaaattttatccatgtaattttatccttttaattttatgaaggatctcaactggaag |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
20422946 |
aattttgccttagcaatagtgacatcattcttattaggcatgtcaaattttatccatgtaattttatccttttaattttatgaaggatctcaactgtaaa |
20423045 |
T |
|
| Q |
299 |
ggtgatataaagtcatatttttaataaatctttgatttataaaagctttgatcaatatctaactacccatattttgatatcacttaattcaacttataca |
398 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20423046 |
ggtgatataaagtcatatttttaataaatctttgatttataaaggctttgatcaatatctaactacccatattttgatatcacttaattcaacttataca |
20423145 |
T |
|
| Q |
399 |
tgtcaag |
405 |
Q |
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||||||| |
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| T |
20423146 |
tgtcaag |
20423152 |
T |
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