View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18588_low_14 (Length: 414)

Name: NF18588_low_14
Description: NF18588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18588_low_14
NF18588_low_14
[»] chr2 (19 HSPs)
chr2 (100-401)||(39205686-39205987)
chr2 (31-401)||(39196385-39196755)
chr2 (56-401)||(39223651-39223993)
chr2 (31-395)||(39387369-39387733)
chr2 (31-382)||(39371073-39371424)
chr2 (62-382)||(39216613-39216933)
chr2 (62-341)||(39153056-39153335)
chr2 (123-283)||(39472731-39472891)
chr2 (123-395)||(39380461-39380733)
chr2 (123-341)||(39138643-39138858)
chr2 (67-339)||(39396563-39396835)
chr2 (123-343)||(44895074-44895294)
chr2 (188-343)||(44624777-44624932)
chr2 (88-341)||(39099584-39099837)
chr2 (88-285)||(39412961-39413158)
chr2 (311-382)||(2362635-2362706)
chr2 (189-343)||(44615401-44615558)
chr2 (188-282)||(39478326-39478420)
chr2 (204-274)||(39188802-39188872)
[»] chr5 (1 HSPs)
chr5 (31-395)||(33562232-33562596)
[»] chr7 (1 HSPs)
chr7 (123-341)||(19808900-19809115)
[»] chr8 (2 HSPs)
chr8 (158-343)||(45342960-45343145)
chr8 (180-285)||(44730168-44730273)
[»] chr3 (1 HSPs)
chr3 (90-244)||(51576079-51576233)
[»] chr6 (1 HSPs)
chr6 (228-397)||(16114308-16114477)


Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 100 - 401
Target Start/End: Original strand, 39205686 - 39205987
Alignment:
Q  100 ttccaaacagctctacggcaattttgtgcagagcaacaaatgccaaaagcttgaaaatttcatctttatcaaaagagtcgagcaatttataaattgacaa 199  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||| || |||||||||||||| |||||    
T  39205686 ttccaagcagctccacggcaattttgtgcagagcaacaaatgccaaaatctcgaaaacttcatctttatcaaaagaatcaagcaatttataaatcgacaa 39205785  T
Q  200 aatcagtagaaaaccaagaatcgccatagaattttcagtattttctttcatcttagctttcaagtcaaatgctagctccaatgcttttttccccacacaa 299  Q
    || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  | |||||||    
T  39205786 aagcagtagaaaaccaagaaccgccatagaattttcagtattttctttcatcttagctttcaagtcaaatgctagcttcaatgctttttctctcacacaa 39205885  T
Q  300 ggttcaataactggtgagattctcatcagttgttcaagcagatatatttggtaatcagcaataatcacaacattatctcccttttggcacagtggagtga 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39205886 ggttcaataactggtgagattctcatcagttgttcaagcagatatatttggtaatcagcaataatcacaacattatctcccttttggcacagtggagtga 39205985  T
Q  400 tg 401  Q
    ||    
T  39205986 tg 39205987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 31 - 401
Target Start/End: Original strand, 39196385 - 39196755
Alignment:
Q  31 taatcatgaaaaactatctaaagcttatctgaattaacatactagaaactctgtttacaaaacccaggattccaaacagctctacggcaattttgtgcag 130  Q
    ||||| ||||||| |||||||||||||||| ||||| ||||| ||||||||||||| ||||||||||| ||||||||||||| || ||||| |||| |||    
T  39196385 taatcttgaaaaaatatctaaagcttatctaaattatcataccagaaactctgtttgcaaaacccaggcttccaaacagctccaccgcaatattgttcag 39196484  T
Q  131 agcaacaaatgccaaaagcttgaaaatttcatctttatcaaaagagtcgagcaatttataaattgacaaaatcagtagaaaaccaagaatcgccatagaa 230  Q
    |||||||||||| |||||||  |||| |||||||| ||||||||| || |||||||||||||||||||||| ||| ||||| ||||||| ||||| ||||    
T  39196485 agcaacaaatgcaaaaagctccaaaacttcatcttcatcaaaagaatcaagcaatttataaattgacaaaagcagcagaaagccaagaaccgccaaagaa 39196584  T
Q  231 ttttcagtattttctttcatcttagctttcaagtcaaatgctagctccaatgcttttttccccacacaaggttcaataactggtgagattctcatcagtt 330  Q
    ||||||||||| || ||||| ||||||||||| ||||||||||||| |||||||| ||| | ||||||||||| |||| |||||||||||||||||||||    
T  39196585 ttttcagtattgtcattcatgttagctttcaaatcaaatgctagcttcaatgcttcttttctcacacaaggtttaatatctggtgagattctcatcagtt 39196684  T
Q  331 gttcaagcagatatatttggtaatcagcaataatcacaacattatctcccttttggcacagtggagtgatg 401  Q
    |||| |||||||| |||||||||||| |||||| |||| |||||||||||||||  ||| ||||| |||||    
T  39196685 gttccagcagatagatttggtaatcaacaataaccacagcattatctcccttttcccactgtggaatgatg 39196755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 56 - 401
Target Start/End: Complemental strand, 39223993 - 39223651
Alignment:
Q  56 tatctgaattaacatactagaaactctgtttacaaaacccaggattccaaacagctctacggcaattttgtgcagagcaacaaatgccaaaagcttgaaa 155  Q
    ||||| ||||||||||| ||||||||||||| |||||||||||  |||||||||||| || |||||||||||||||||||||||||| ||||| |  | |    
T  39223993 tatctaaattaacataccagaaactctgtttgcaaaacccaggcatccaaacagctccacagcaattttgtgcagagcaacaaatgcaaaaagatccaga 39223894  T
Q  156 atttcatctttatcaaaagagtcgagcaatttataaattgacaaaatcagtagaaaaccaagaatcgccatagaattttcagtattttctttcatcttag 255  Q
    | |||||||| |||||| || || |||||||||||||||||||||| ||| ||||||||||||| ||||| ||| ||||||||||| |||||||| ||      
T  39223893 acttcatcttcatcaaatgaatcaagcaatttataaattgacaaaagcagcagaaaaccaagaaccgccaaagatttttcagtattgtctttcatgtttt 39223794  T
Q  256 ctttcaagtcaaatgctagctccaatgcttttttccccacacaaggttcaataactggtgagattctcatcagttgttcaagcagatatatttggtaatc 355  Q
    |||| || ||| ||||||||| |||||||||||  | | |||||||||||||| |||||||||||||||||||||||||||| ||||  |||||||||||    
T  39223793 cttttaaatcatatgctagcttcaatgctttttctctctcacaaggttcaatatctggtgagattctcatcagttgttcaagtagatggatttggtaatc 39223694  T
Q  356 agcaataatcacaacattatctcccttttggcacagtggagtgatg 401  Q
    || |||||||   ||||| ||||||||||| ||| ||||| |||||    
T  39223693 agtaataatc---acattgtctcccttttgacaccgtggaatgatg 39223651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 31 - 395
Target Start/End: Original strand, 39387369 - 39387733
Alignment:
Q  31 taatcatgaaaaactatctaaagcttatctgaattaacatactagaaactctgtttacaaaacccaggattccaaacagctctacggcaattttgtgcag 130  Q
    ||||||||| ||| ||||| ||| |||||| ||  |||||||  |||||||||||| ||||||||||  ||||||| ||||| || ||||||| |||||     
T  39387369 taatcatgataaaatatctgaagtttatctaaaaaaacatacctgaaactctgtttgcaaaacccagacttccaaatagctccacagcaatttcgtgcat 39387468  T
Q  131 agcaacaaatgccaaaagcttgaaaatttcatctttatcaaaagagtcgagcaatttataaattgacaaaatcagtagaaaaccaagaatcgccatagaa 230  Q
    |||||||||||| |||||||  |||| ||||||||  |||||| | || ||||    |||||||||||||| ||| |||||||||||||  |||| ||||    
T  39387469 agcaacaaatgcaaaaagctccaaaacttcatcttcgtcaaaataatcaagcagcccataaattgacaaaagcagcagaaaaccaagaacggccaaagaa 39387568  T
Q  231 ttttcagtattttctttcatcttagctttcaagtcaaatgctagctccaatgcttttttccccacacaaggttcaataactggtgagattctcatcagtt 330  Q
    |||||||||||||||||||| |||||||| || |||   ||||||| |||||||| |||    ||||||| ||||||   ||||||| ||||||||||||    
T  39387569 ttttcagtattttctttcatgttagcttttaaatcacgcgctagcttcaatgcttctttttttacacaagtttcaatttttggtgaggttctcatcagtt 39387668  T
Q  331 gttcaagcagatatatttggtaatcagcaataatcacaacattatctcccttttggcacagtgga 395  Q
    |||| |||| ||  ||||||||||||||||||||||||  ||| ||  ||||||| |||||||||    
T  39387669 gttctagcatatggatttggtaatcagcaataatcacagaattgtcaaccttttgacacagtgga 39387733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 31 - 382
Target Start/End: Complemental strand, 39371424 - 39371073
Alignment:
Q  31 taatcatgaaaaactatctaaagcttatctgaattaacatactagaaactctgtttacaaaacccaggattccaaacagctctacggcaattttgtgcag 130  Q
    ||||||||| ||| |||||||||| | |||  |||||||||| |||| || ||||  ||||||||| | ||||||||||||| |  || || ||||||      
T  39371424 taatcatgataaaatatctaaagcatgtctacattaacataccagaagctttgttggcaaaacccatggttccaaacagctccatagctatcttgtgctc 39371325  T
Q  131 agcaacaaatgccaaaagcttgaaaatttcatctttatcaaaagagtcgagcaatttataaattgacaaaatcagtagaaaaccaagaatcgccatagaa 230  Q
    |||||||||||| |||||||  |||| |||||||| |||||||||    | ||||  |||| ||||||||| || |||||||||||||| | ||| || |    
T  39371324 agcaacaaatgcaaaaagctccaaaagttcatcttcatcaaaagaagtaaccaatccataatttgacaaaagcaatagaaaaccaagaaccaccaaagga 39371225  T
Q  231 ttttcagtattttctttcatcttagctttcaagtcaaatgctagctccaatgcttttttccccacacaaggttcaataactggtgagattctcatcagtt 330  Q
    |||| | ||||||||||||| || |||||||  |||| |||||||| ||||||||  |  |  |||||||| ||||||  |||||||||| |||| ||||    
T  39371224 tttttactattttctttcatgttggctttcatatcaagtgctagcttcaatgcttcatctcttacacaaggctcaatatttggtgagattttcataagtt 39371125  T
Q  331 gttcaagcagatatatttggtaatcagcaataatcacaacattatctccctt 382  Q
    |||| |||||    |||||||||||||||||||| |||||||| ||||||||    
T  39371124 gttctagcagcaggatttggtaatcagcaataattacaacattgtctccctt 39371073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 62 - 382
Target Start/End: Complemental strand, 39216933 - 39216613
Alignment:
Q  62 aattaacatactagaaactctgtttacaaaacccaggattccaaacagctctacggcaattttgtgcagagcaacaaatgccaaaagcttgaaaatttca 161  Q
    ||||||||||| ||||||| | ||| ||||||||||| |  ||||||| || |  || || |||||| |||||||| |||| |||||||  |||| ||||    
T  39216933 aattaacataccagaaactttatttgcaaaacccagggtctcaaacagttcaatagctatcttgtgctgagcaacagatgcaaaaagctccaaaacttca 39216834  T
Q  162 tctttatcaaaagagtcgagcaatttataaattgacaaaatcagtagaaaaccaagaatcgccatagaattttcagtattttctttcatcttagctttca 261  Q
    |||| | |||||||    | ||||  |||||||||||||| ||| |||||||| |||| | ||| |||||||| |||||||||  |||| |||| |||||    
T  39216833 tcttcaccaaaagaagtaaccaatccataaattgacaaaagcagaagaaaaccgagaaccaccaaagaatttttagtattttcactcatgttagatttca 39216734  T
Q  262 agtcaaatgctagctccaatgcttttttccccacacaaggttcaataactggtgagattctcatcagttgttcaagcagatatatttggtaatcagcaat 361  Q
    | ||||||||||||| |||||||| ||  |  |||||||||| ||||   ||||||||| ||||||||||||| |||  ||| || ||||||||||||||    
T  39216733 aatcaaatgctagcttcaatgcttcttctcttacacaaggtttaatatgaggtgagattttcatcagttgttctagcgaataaatatggtaatcagcaat 39216634  T
Q  362 aatcacaacattatctccctt 382  Q
    ||||||| |||| ||||||||    
T  39216633 aatcacagcattgtctccctt 39216613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 62 - 341
Target Start/End: Complemental strand, 39153335 - 39153056
Alignment:
Q  62 aattaacatactagaaactctgtttacaaaacccaggattccaaacagctctacggcaattttgtgcagagcaacaaatgccaaaagcttgaaaatttca 161  Q
    ||||||||||| ||||||| | ||| ||||||||||| | | ||| || || || ||| | |||||  ||||||||||||| |||||||  || | ||||    
T  39153335 aattaacataccagaaactttatttgcaaaacccagggtccgaaatagttccacagcagtcttgtgttgagcaacaaatgcaaaaagctccaagacttca 39153236  T
Q  162 tctttatcaaaagagtcgagcaatttataaattgacaaaatcagtagaaaaccaagaatcgccatagaattttcagtattttctttcatcttagctttca 261  Q
    |||||||| |||||    | ||||  |||||| ||||||| ||||||||||||||||| | ||| ||||||||||||||||||||| || ||||||||||    
T  39153235 tctttatcgaaagaagtaaccaatccataaatcgacaaaaccagtagaaaaccaagaaccaccaaagaattttcagtattttcttttattttagctttca 39153136  T
Q  262 agtcaaatgctagctccaatgcttttttccccacacaaggttcaataactggtgagattctcatcagttgttcaagcaga 341  Q
    | |||  ||| || | |||||||| ||  |  |||||||||| |||    ||||||||||||||||||||||| ||||||    
T  39153135 aatcatgtgcgagtttcaatgcttcttctcttacacaaggtttaatcttcggtgagattctcatcagttgttctagcaga 39153056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 123 - 283
Target Start/End: Original strand, 39472731 - 39472891
Alignment:
Q  123 ttgtgcagagcaacaaatgccaaaagcttgaaaatttcatctttatcaaaagagtcgagcaatttataaattgacaaaatcagtagaaaaccaagaatcg 222  Q
    |||||| ||||||||||||| || ||||  || | |||||||| |||||||||    ||||||| |||||||||||||| |||||||||||||||||       
T  39472731 ttgtgctgagcaacaaatgcgaagagctccaagacttcatcttcatcaaaagaagtaagcaattcataaattgacaaaagcagtagaaaaccaagaacta 39472830  T
Q  223 ccatagaattttcagtattttctttcatcttagctttcaagtcaaatgctagctccaatgc 283  Q
    ||| |||||||||||||||||||||||| ||| ||||||| |||| ||| |||| ||||||    
T  39472831 ccaaagaattttcagtattttctttcatgttaactttcaaatcaagtgcgagcttcaatgc 39472891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 123 - 395
Target Start/End: Original strand, 39380461 - 39380733
Alignment:
Q  123 ttgtgcagagcaacaaatgccaaaagcttgaaaatttcatctttatcaaaagagtcgagcaatttataaattgacaaaatcagtagaaaaccaagaatcg 222  Q
    |||||| ||||||| ||||| |||||||  ||||||||||||| ||| |||||    ||||||  |||||||||||||| ||||||||| ||||||| ||    
T  39380461 ttgtgctgagcaaccaatgcaaaaagctccaaaatttcatcttcatcgaaagaagtaagcaatccataaattgacaaaagcagtagaaatccaagaaccg 39380560  T
Q  223 ccatagaattttcagtattttctttcatcttagctttcaagtcaaatgctagctccaatgcttttttccccacacaaggttcaataactggtgagattct 322  Q
    ||| ||||| ||||||||| ||| | || | ||||||||| |||| |||||||  || ||||| ||  |  ||||||  |||||||   ||||||| |||    
T  39380561 ccacagaatcttcagtattctctcttatgtaagctttcaaatcaagtgctagcgtcagtgcttcttctcttacacaatcttcaatattcggtgagactct 39380660  T
Q  323 catcagttgttcaagcagatatatttggtaatcagcaataatcacaacattatctcccttttggcacagtgga 395  Q
    |||||||||||| |||||| | ||  ||  ||||  || ||||||| |||| |||||||| | ||||||||||    
T  39380661 catcagttgttctagcagaaagatgcggctatcataaaaaatcacagcattgtctcccttcttgcacagtgga 39380733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 123 - 341
Target Start/End: Complemental strand, 39138858 - 39138643
Alignment:
Q  123 ttgtgcagagcaacaaatgccaaaagcttgaaaatttcatctttatcaaaagagtcgagcaatttataaattgacaaaatcagtagaaaaccaagaatcg 222  Q
    |||||| ||||||||||||  |||||||  || | |||||||| ||||||| |    ||||||| ||||| ||||||||||||||||||||| |||| |     
T  39138858 ttgtgctgagcaacaaatgtgaaaagctccaagacttcatcttcatcaaaataagtaagcaattcataaactgacaaaatcagtagaaaaccgagaacca 39138759  T
Q  223 ccatagaattttcagtattttctttcatcttagctttcaagtcaaatgctagctccaatgcttttttccccacacaaggttcaataactggtgagattct 322  Q
    ||| |||||||||||||||   |||||| ||||||||||  | || |||||||| |||||||| ||  |  |||  ||||| |||    |||||||||||    
T  39138758 ccagagaattttcagtatt---tttcatgttagctttcagattaagtgctagcttcaatgcttcttctcttacatcaggtttaatcttcggtgagattct 39138662  T
Q  323 catcagttgttcaagcaga 341  Q
    |||||||||||| ||||||    
T  39138661 catcagttgttctagcaga 39138643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 67 - 339
Target Start/End: Original strand, 39396563 - 39396835
Alignment:
Q  67 acatactagaaactctgtttacaaaacccaggattccaaacagctctacggcaattttgtgcagagcaacaaatgccaaaagcttgaaaatttcatcttt 166  Q
    |||||| ||||||| | ||| ||||||||||| |  |||||||||| |  ||  | |||||| |||||||  |||| |||||||  |||| ||||||||     
T  39396563 acataccagaaactttatttgcaaaacccagggtctcaaacagctccatagctgtcttgtgctgagcaaccgatgcaaaaagctccaaaacttcatcttc 39396662  T
Q  167 atcaaaagagtcgagcaatttataaattgacaaaatcagtagaaaaccaagaatcgccatagaattttcagtattttctttcatcttagctttcaagtca 266  Q
    ||| |||||    ||||||  |||||||||||||| ||  | ||||||||||| ||||| ||||||||||||||||||| | || | |||| |||| |||    
T  39396663 atcgaaagaagtaagcaatccataaattgacaaaagcaacaaaaaaccaagaaccgccaaagaattttcagtattttctctaatgtaagctctcaaatca 39396762  T
Q  267 aatgctagctccaatgcttttttccccacacaaggttcaataactggtgagattctcatcagttgttcaagca 339  Q
      |||||||| || ||||| ||  |  |||||||||  ||||  |||||||||||||||||||| ||| ||||    
T  39396763 tgtgctagcttcagtgcttcttctcttacacaaggtctaatagttggtgagattctcatcagttcttctagca 39396835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 123 - 343
Target Start/End: Original strand, 44895074 - 44895294
Alignment:
Q  123 ttgtgcagagcaacaaatgccaaaagcttgaaaatttcatctttatcaaaagagtcgagcaatttataaattgacaaaatcagtagaaaaccaagaatcg 222  Q
    |||||| ||||||||||||| |||||||  |||| |||  ||| ||| |||||    | ||||  |||||||||||||| ||||||||||||||||| |     
T  44895074 ttgtgctgagcaacaaatgcaaaaagctccaaaacttcgccttcatcgaaagaagtaatcaatccataaattgacaaaagcagtagaaaaccaagaacca 44895173  T
Q  223 ccatagaattttcagtattttctttcatcttagctttcaagtcaaatgctagctccaatgcttttttccccacacaaggttcaataactggtgagattct 322  Q
    ||| |||||||||||||||| |||| || |||||||| || | |  |||||||| |||||||| ||  |  |||| ||||| ||||| |||||| ||||     
T  44895174 ccaaagaattttcagtatttccttttatgttagctttgaatttatgtgctagcttcaatgcttgttctcttacacgaggtttaataattggtgacattcc 44895273  T
Q  323 catcagttgttcaagcagata 343  Q
    |||||||  ||| ||||||||    
T  44895274 catcagtgtttctagcagata 44895294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 188 - 343
Target Start/End: Complemental strand, 44624932 - 44624777
Alignment:
Q  188 ataaattgacaaaatcagtagaaaaccaagaatcgccatagaattttcagtattttctttcatcttagctttcaagtcaaatgctagctccaatgctttt 287  Q
    |||||| |||||||||| |||||| || |||| | ||| | |||||||||||||||||||||| ||||||||||| |||   ||||||| ||||||||      
T  44624932 ataaatcgacaaaatcaatagaaatccgagaacctccaaataattttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttca 44624833  T
Q  288 ttccccacacaaggttcaataactggtgagattctcatcagttgttcaagcagata 343  Q
    |  |  |||||||||| ||||  |||||||||| ||||||||| ||| ||||||||    
T  44624832 tctcttacacaaggtttaatatttggtgagattgtcatcagtttttctagcagata 44624777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 88 - 341
Target Start/End: Complemental strand, 39099837 - 39099584
Alignment:
Q  88 caaaacccaggattccaaacagctctacggcaattttgtgcagagcaacaaatgccaaaagcttgaaaatttcatctttatcaaaagagtcgagc-aatt 186  Q
    |||||||||| |||||||| |||| ||| || || |||||| ||||| ||||  | |||||||| |||| |||||||| |||||||||   |||| ||||    
T  39099837 caaaacccagaattccaaagagctttacagctatcttgtgctgagcagcaaacccaaaaagctttaaaacttcatcttcatcaaaagaag-gagccaatt 39099739  T
Q  187 tataaattgacaaaatcagtagaaaaccaagaatcgccatagaattttcagtattttctttcatcttagctttcaagtcaaatgctagctccaatgcttt 286  Q
    |||||||||||| ||  |||||||||||||||| |||||  |||||||||||| ||||  | ||   || |||||| | || ||| |||| ||  ||||     
T  39099738 tataaattgacagaaggagtagaaaaccaagaaccgccaccgaattttcagtagtttcacttataaaagatttcaacttaagtgccagcttcatcgcttc 39099639  T
Q  287 tttccccacacaaggttcaataactggtgagattctcatcagttgttcaagcaga 341  Q
    ||  |  ||||||||||  |||  |||||||||||||||||||||||| ||||||    
T  39099638 ttctcttacacaaggtttgatatgtggtgagattctcatcagttgttcgagcaga 39099584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 88 - 285
Target Start/End: Original strand, 39412961 - 39413158
Alignment:
Q  88 caaaacccaggattccaaacagctctacggcaattttgtgcagagcaacaaatgccaaaagcttgaaaatttcatctttatc-aaaagagtcgagcaatt 186  Q
    ||||||||||| ||||||||||||   | || || |||||  ||||||||||||| |||||||  || |||||||||| ||| |||| |||  | ||||     
T  39412961 caaaacccagggttccaaacagcttcgcagctatcttgtgttgagcaacaaatgcaaaaagctccaagatttcatcttcatccaaaaaagta-accaatc 39413059  T
Q  187 tataaattgacaaaatcagtagaaaaccaagaatcgccatagaattttcagtattttctttcatcttagctttcaagtcaaatgctagctccaatgctt 285  Q
     | ||| |||||||| ||  ||||||| ||||| ||||| ||| ||||| |||||||||||||  ||||||||||| |||| |||||||| ||||||||    
T  39413060 cacaaactgacaaaagcaacagaaaactaagaaccgccaaagagttttcggtattttctttcaagttagctttcaaatcaagtgctagcttcaatgctt 39413158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 311 - 382
Target Start/End: Complemental strand, 2362706 - 2362635
Alignment:
Q  311 tggtgagattctcatcagttgttcaagcagatatatttggtaatcagcaataatcacaacattatctccctt 382  Q
    |||||||||||||||||||||||| |||||||  || |||| |||| ||||||| |||||||| ||||||||    
T  2362706 tggtgagattctcatcagttgttcgagcagatcaatgtggtgatcatcaataattacaacattttctccctt 2362635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 189 - 343
Target Start/End: Complemental strand, 44615558 - 44615401
Alignment:
Q  189 taaattgacaaaatcagtagaaaaccaagaatcgccatagaattttcagtattttctttcatcttagctttcaagtcaaatgctagctccaatgcttttt 288  Q
    ||||| || ||||||| |||||| ||||||  | ||| ||||||||| |||||||||||||| ||||||||||| ||| | ||||||| ||| ||||  |    
T  44615558 taaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtattttctttcatgttagctttcaactcacacgctagcttcaacgcttcat 44615459  T
Q  289 tccccacacaaggttcaataa---ctggtgagattctcatcagttgttcaagcagata 343  Q
      |  ||||||| || |||||    |||||||||| ||||||||||||| ||||||||    
T  44615458 ctcttacacaagatttaataatatttggtgagattatcatcagttgttctagcagata 44615401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 188 - 282
Target Start/End: Original strand, 39478326 - 39478420
Alignment:
Q  188 ataaattgacaaaatcagtagaaaaccaagaatcgccatagaattttcagtattttctttcatcttagctttcaagtcaaatgctagctccaatg 282  Q
    |||||||||||||| |||||||||| ||||||  |||  ||||||||||||||||||| | || | ||||||||| |||  |||||||| |||||    
T  39478326 ataaattgacaaaagcagtagaaaatcaagaactgccgaagaattttcagtattttctctgatgtaagctttcaaatcatgtgctagcttcaatg 39478420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 204 - 274
Target Start/End: Original strand, 39188802 - 39188872
Alignment:
Q  204 agtagaaaaccaagaatcgccatagaattttcagtattttctttcatcttagctttcaagtcaaatgctag 274  Q
    |||||||||||||||| | ||| ||||||| || ||||||||||||| |||||||| || |||| ||||||    
T  39188802 agtagaaaaccaagaaccaccaaagaatttccattattttctttcatgttagcttttaaatcaagtgctag 39188872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 31 - 395
Target Start/End: Complemental strand, 33562596 - 33562232
Alignment:
Q  31 taatcatgaaaaactatctaaagcttatctgaattaacatactagaaactctgtttacaaaacccaggattccaaacagctctacggcaattttgtgcag 130  Q
    ||||||||| ||| |||||||||||||||| ||||||||||| ||||||||||||| ||||||||||| || |||||||||| |||||||||||||||||    
T  33562596 taatcatgataaaatatctaaagcttatctaaattaacataccagaaactctgtttgcaaaacccaggctttcaaacagctccacggcaattttgtgcag 33562497  T
Q  131 agcaacaaatgccaaaagcttgaaaatttcatctttatcaaaagagtcgagcaatttataaattgacaaaatcagtagaaaaccaagaatcgccatagaa 230  Q
    |||||||||||| |||||||  |||| |||||||| ||||||||| || |||||||||||||||||||||| ||  ||||||||||||| ||||| | ||    
T  33562496 agcaacaaatgcaaaaagctccaaaacttcatcttcatcaaaagaatcaagcaatttataaattgacaaaagcatcagaaaaccaagaaccgccaaaaaa 33562397  T
Q  231 ttttcagtattttctttcatcttagctttcaagtcaaatgctagctccaatgcttttttccccacacaaggttcaataactggtgagattctcatcagtt 330  Q
      |||||||||||||||||| ||||||||||| ||||||||||||| |||||||| ||| | |||||||||||||||| |||||||||||||||||||||    
T  33562396 aattcagtattttctttcatgttagctttcaaatcaaatgctagcttcaatgcttcttttctcacacaaggttcaatatctggtgagattctcatcagtt 33562297  T
Q  331 gttcaagcagatatatttggtaatcagcaataatcacaacattatctcccttttggcacagtgga 395  Q
    |||| || ||||| |||||||||||| ||||||| |||||||| ||||||||||| |||||||||    
T  33562296 gttccagaagatagatttggtaatcaacaataatgacaacattgtctcccttttgacacagtgga 33562232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 123 - 341
Target Start/End: Complemental strand, 19809115 - 19808900
Alignment:
Q  123 ttgtgcagagcaacaaatgccaaaagcttgaaaatttcatctttatcaaaagagtcgagcaatttataaattgacaaaatcagtagaaaaccaagaatcg 222  Q
    |||||| ||||||||||||| |||||||  || | |||||||| ||||||| |    ||||||| ||||| |||||||| ||||||||||||||||| |     
T  19809115 ttgtgctgagcaacaaatgcgaaaagctccaagacttcatcttcatcaaaataagtaagcaattcataaactgacaaaagcagtagaaaaccaagaacca 19809016  T
Q  223 ccatagaattttcagtattttctttcatcttagctttcaagtcaaatgctagctccaatgcttttttccccacacaaggttcaataactggtgagattct 322  Q
    ||| ||||||||||||| |   |||||| ||||||||||| |||| |||||||| ||||| || ||  |  |||| ||||| |||    |||||||||||    
T  19809015 ccagagaattttcagtact---tttcatgttagctttcaaatcaagtgctagcttcaatgtttcttctcttacaccaggtttaatcttcggtgagattct 19808919  T
Q  323 catcagttgttcaagcaga 341  Q
    |||||||||||| ||||||    
T  19808918 catcagttgttctagcaga 19808900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 158 - 343
Target Start/End: Complemental strand, 45343145 - 45342960
Alignment:
Q  158 ttcatctttatcaaaagagtcgagcaatttataaattgacaaaatcagtagaaaaccaagaatcgccatagaattttcagtattttctttcatcttagct 257  Q
    ||||||||||||||||||    ||||||  || |||||||||||||||||||||||||||||    ||  || |||||||||||| ||||||  ||||||    
T  45343145 ttcatctttatcaaaagaagtaagcaatacatgaattgacaaaatcagtagaaaaccaagaacgttcaatgatttttcagtatttcctttcacgttagct 45343046  T
Q  258 ttcaagtcaaatgctagctccaatgcttttttccccacacaaggttcaataactggtgagattctcatcagttgttcaagcagata 343  Q
    ||||| |||| ||||||||  ||||||| ||  |  |||||||||| ||||  |||  ||||||||||||||||||| || |||||    
T  45343045 ttcaactcaagtgctagcttgaatgcttcttctcttacacaaggtttaatacttggcaagattctcatcagttgttctaggagata 45342960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 285
Target Start/End: Complemental strand, 44730273 - 44730168
Alignment:
Q  180 agcaatttataaattgacaaaatcagtagaaaaccaagaatcgccatagaattttcagtattttctttcatcttagctttcaagtcaaatgctagctcca 279  Q
    |||||| ||||||| | |||||||| |||||| || |||| | ||  ||||||||||||||||||||| || ||||||||||| |||  |||||||| ||    
T  44730273 agcaatctataaatcgtcaaaatcaatagaaatccgagaacctcctaagaattttcagtattttcttttatgttagctttcaactcatgtgctagcttca 44730174  T
Q  280 atgctt 285  Q
    | ||||    
T  44730173 aagctt 44730168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 90 - 244
Target Start/End: Complemental strand, 51576233 - 51576079
Alignment:
Q  90 aaacccaggattccaaacagctctacggcaattttgtgcagagcaacaaatgccaaaagcttgaaaatttcatctttatcaaaagagtcgagcaatttat 189  Q
    |||||||  ||||||||||||||||| || ||||||||| ||||||||||| | |||  ||| ||||||||||||||||||||| |    | ||||  ||    
T  51576233 aaacccatcattccaaacagctctactgctattttgtgctgagcaacaaatccaaaatacttcaaaatttcatctttatcaaaataaggaaccaatccat 51576134  T
Q  190 aaattgacaaaatcagtagaaaaccaagaatcgccatagaattttcagtattttc 244  Q
    ||||||||| ||  || ||| ||||||||| | |||  |||||||||||||||||    
T  51576133 aaattgacagaaggagcagataaccaagaaccaccacggaattttcagtattttc 51576079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 397
Target Start/End: Complemental strand, 16114477 - 16114308
Alignment:
Q  228 gaattttcagtattttctttcatcttagctttcaagtcaaatgctagctccaatgcttttttccccacacaaggttcaataactggtgagattctcatca 327  Q
    ||||||| |||||| ||| |||| | ||||||||| ||    ||||||| |||||||||||  |  |||| ||||| ||||  |||||| ||||||||||    
T  16114477 gaatttttagtattctctctcatgtaagctttcaaatcgcgcgctagcttcaatgctttttctcttacacgaggtttaatagttggtgatattctcatca 16114378  T
Q  328 gttgttcaagcagatatatttggtaatcagcaataatcacaacattatctcccttttggcacagtggagt 397  Q
    ||| ||| | |||||| || ||| | ||| ||||||||||| |||| |||||||| |  |||||||||||    
T  16114377 gttcttctaacagatagatgtggcattcatcaataatcacagcattgtctcccttcttacacagtggagt 16114308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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