View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18588_low_15 (Length: 401)
Name: NF18588_low_15
Description: NF18588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18588_low_15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 9 - 387
Target Start/End: Original strand, 6148889 - 6149267
Alignment:
| Q |
9 |
gagaagaagagataacagaaaagagagcaaacaaaccttgaacataatatacttagaggaaaacagaagggtgtatgtggggtgcgaagttaaagcccta |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
6148889 |
gagaagaagagataacagaaaagagagcaaacaaaccttgaacataatatacttagaggaaaacagaagggtgtatgtggggtgtgaagttaaagcccta |
6148988 |
T |
|
| Q |
109 |
aaaatattttgtctatttaaatttcctttttacatattttctttccaagtagaacgagataagaacaaaggtacgagttaagttaggcaaacccttaatt |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
6148989 |
aaaatattttgtctatttaaatttcctttttacattttttctttctaagtagaacgagataagaacaaaggtacgagttaagttagacaaacccttaatt |
6149088 |
T |
|
| Q |
209 |
aaaataaattttgttaaagtattaattacccgtctcttctttctttactcttaaaatgcgggtctcatttaaaaatgaaacttttactcttcacaaattc |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6149089 |
aaaataaattttgttaaagtattaattacccgtctcttttttctttactcttaaaatgcgggtctcatttaaaaatgaaacttttactcttcacaaattc |
6149188 |
T |
|
| Q |
309 |
atactctatttatttttatatcacgtcagttagttttcttcgcaaacagatgtaactgatgatgatacatgatactgat |
387 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
6149189 |
atactctatttatttttatatcacgtcagttagttttctttgcaaacagatgtaactgatggtgatacatgatactgat |
6149267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University