View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18588_low_16 (Length: 401)
Name: NF18588_low_16
Description: NF18588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18588_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 391
Target Start/End: Complemental strand, 37240310 - 37239918
Alignment:
| Q |
1 |
tgatttgaaaggctataccacataaatctgcannnnnnnn--gttggtatataatgcaaattgagaagaaaaagaaataacattcaattatttgctaaga |
98 |
Q |
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| T |
37240310 |
tgatttgaaaggctataccacataaatatgcattttttttttgttggtatataatgcaaattgagaagaaaaagaaataacattcaattttttgctaaga |
37240211 |
T |
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| Q |
99 |
aaaaatgcttcccaccttgagaacagaatcaatgggatagttttctttaagcctaggatccaccaattttcgaagaccttctaaaggatccatttgatga |
198 |
Q |
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| T |
37240210 |
aaaaatgcttcccaccttgagaacagaatcaatgggatagttttctttaagcctaggatccaccaattttcgaagaccttctaaaggatccattcgatga |
37240111 |
T |
|
| Q |
199 |
agtgcttcttcaaactgcaatacaaaacaattatggataatttttgttct-gtttaagtgagaattcattcacttcactgaatttaaaatgtacacaatt |
297 |
Q |
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| T |
37240110 |
agtgcttcttcaaactgcaatacaaaataatcaaggataacttttgttctggtttaagt--gaatgcattcagtttactgaatttaaaatgtacataatt |
37240013 |
T |
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| Q |
298 |
actagc---ataacattttactataaatatatacatgaaatgagtgttttcttaataaatatggtatatagacctaccaattgtacaagaccctttg |
391 |
Q |
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| T |
37240012 |
actaacttaaaaatattttac--taaaaatatacatgaaatgagtgttttcttaataaatatggtatctagacctaccaattgtacaagaccctttg |
37239918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 101 - 225
Target Start/End: Complemental strand, 37316428 - 37316304
Alignment:
| Q |
101 |
aaatgcttcccaccttgagaacagaatcaatgggatagttttctttaagcctaggatccaccaattttcgaagaccttctaaaggatccatttgatgaag |
200 |
Q |
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|||||||||||||||| |||||||||||||| ||||||| |||| |||| ||||||||||||| ||| ||||||| |||||||||||| | |||| ||| |
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| T |
37316428 |
aaatgcttcccacctttagaacagaatcaattggatagtcttctctaagtctaggatccaccagtttgcgaagactttctaaaggatcagtctgattaag |
37316329 |
T |
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| Q |
201 |
tgcttcttcaaactgcaatacaaaa |
225 |
Q |
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| T |
37316328 |
tgcttcttcaaactgcaatacaaaa |
37316304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 187
Target Start/End: Complemental strand, 37199230 - 37199169
Alignment:
| Q |
126 |
atcaatgggatagttttctttaagcctaggatccaccaattttcgaagaccttctaaaggat |
187 |
Q |
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|||||| |||||||| ||| ||||||||||||||||| |||| ||||||||||| ||||| |
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| T |
37199230 |
atcaattggatagttatctccaagcctaggatccaccagttttttaagaccttctataggat |
37199169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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