View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18588_low_2 (Length: 609)
Name: NF18588_low_2
Description: NF18588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18588_low_2 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 591; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 591; E-Value: 0
Query Start/End: Original strand, 11 - 609
Target Start/End: Original strand, 38815985 - 38816583
Alignment:
| Q |
11 |
aatgaaggtgttggaagcgacaatgagggaaaacctaaatgccgcaattaaggtggttagaggcagaccacaattaaagtagaatttcccaacaacagta |
110 |
Q |
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| T |
38815985 |
aatgaaggtgttggaagcgacaatgagggaaaacccaaatgccgcaattaaggtggttagaggcagtccacaattaaagtagaatttcccaacaacagta |
38816084 |
T |
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| Q |
111 |
aaattaattttaaaaattacacttctataactaggtttacatttctatcttatccaattcccttcacagaatcacatgcacaattatcataactcagtga |
210 |
Q |
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| T |
38816085 |
aaattaattttaaaaattacacttctataactaggtttacatttctatcttatccaattcccttcacagaatcacatgcacaattatcataactcagtga |
38816184 |
T |
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| Q |
211 |
aagaaaatgcaagaaaaggtatattgtatcctttgaacctcaatttctcacctacccaaagaaacctcatacaactatatacccttctctaacagacaaa |
310 |
Q |
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| T |
38816185 |
aagaaaatgcaagaaaaggtatattgtatcctttgaacctcaatttctcacctacccaaagaaacctcatacaactatatacccttctctaacagacaaa |
38816284 |
T |
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| Q |
311 |
gtcagtttaatttacataaggccgtgatgtataccaactgtaaccacaaaaagtagccaactgcaaaatctagacaaaatgtaaaaccctaagaacaagg |
410 |
Q |
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| T |
38816285 |
gtcagtttaatttacataaggccgtgatgtataccaactgtaaccacaaaaagtagccaactgcaaaatctagacaaaatgtaaaaccctaagaacaagg |
38816384 |
T |
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| Q |
411 |
tttaattaaacctaaacaacagcataccatttgtccctttctcacccacccaagcattcctccttcatctttagaagggcaaattgaatgttccacagca |
510 |
Q |
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| T |
38816385 |
tttaattaaacctaaacaacagcataccatttgtccctttctcacccacccaagcattcctccttcatctttagaagggcaaattgaatgttccacagca |
38816484 |
T |
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| Q |
511 |
agatcactcaaatcttcacctgaacacacaacaagaaagccttagaaagaaacttcacaaataaatatctcccataaatatctagcaccgagacttcat |
609 |
Q |
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| T |
38816485 |
agatcactcaaatcttcacctgaacacacaacaagaaagccttagaaagaaacttcacaaataaatatctcccataaatatctagcaccgagacttcat |
38816583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 394 - 543
Target Start/End: Original strand, 38821782 - 38821928
Alignment:
| Q |
394 |
aaaccctaagaacaaggtttaattaaacctaaacaacagcataccatttgtccctttctcacccacccaagcattcctccttcatctttagaagggcaaa |
493 |
Q |
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| T |
38821782 |
aaaccctaagaacaagatttaagcaaatctaaacatca---taccatttgtccctttctcacccacccaagccttcctccttcttctttagatgggcaca |
38821878 |
T |
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| Q |
494 |
ttgaatgttccacagcaagatcactcaaatcttcacctgaacacacaaca |
543 |
Q |
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| T |
38821879 |
ccgaatagtccacagcaagatcgctcaaatcttcacctggacacacaaca |
38821928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 157
Target Start/End: Original strand, 38821542 - 38821591
Alignment:
| Q |
108 |
gtaaaattaattttaaaaattacacttctataactaggtttacatttcta |
157 |
Q |
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| T |
38821542 |
gtaaaattaattttaaaaaaggcacttctataactaggtctatatttcta |
38821591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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