View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18588_low_20 (Length: 378)
Name: NF18588_low_20
Description: NF18588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18588_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 115567 - 115930
Alignment:
| Q |
1 |
atcaaaactgagcatggataagccactttgggagatgcatattctgagagcacacaagtgtattatatttagaattcatcattcacttggagatggaata |
100 |
Q |
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| T |
115567 |
atcaaaactgagcatggataagccactttgggagatgcatattctgagagcacacaagtgtattatatttagaattcatcattcacttggagatggaata |
115666 |
T |
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| Q |
101 |
tcactcatgtcgatgcttcttgctggttgtaggaagttgcaagatccaaactctcttccaaccatatctcttccaaa-taacaacaaca-aatctcaaag |
198 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
115667 |
tcactcatgtcgatgctccttgctggttgtaggaagttgcaagatccaaactctcttccaaccatatctcttccaaaataacaacaacacaatctcaaag |
115766 |
T |
|
| Q |
199 |
aagaaatttatggagtatcctgattgctctgtatttttcatttatatatgtcatccaattcattctgagggttctatggattcgtgaccgtaaaaccgct |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
115767 |
aagaaatttatggagtatcctgattgctctgtatttttcatttatatatgtcatccaattcattctgagggttctatggattcgtgaccgtaaaaccgct |
115866 |
T |
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| Q |
299 |
ataacaggcggagaaggggttgacctttggcccaggaagatagcaactgctactttttcattgg |
362 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
115867 |
ataacaggcggagaaggggttgacctttggcccaggaagatagcaactgctactttttcattgg |
115930 |
T |
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