View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18588_low_23 (Length: 346)
Name: NF18588_low_23
Description: NF18588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18588_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 141 - 342
Target Start/End: Original strand, 42578330 - 42578531
Alignment:
| Q |
141 |
tacaactaccctcacaacactaacccctttctcaaacagaattcaatccactcttttgcagcttaattcatcccactctaaaccatatagtaacttcctg |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42578330 |
tacaactaccctcacaacactaacccctttctcaaacagaattcaacccactcttttgcagcttaattcatcccactctaaaccatatagtaacttcctg |
42578429 |
T |
|
| Q |
241 |
actttaatttcctcaaaatatctgggtttgcatgctatccctttcttacaccctataaatccataagattgtttcacgactcttagaagttcatattctt |
340 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
42578430 |
actttaatttcctcaaaatatctgggtttgcatgctatccctttcttacaccctataaatccataagattgtttcacgactcttagaagttcattttctt |
42578529 |
T |
|
| Q |
341 |
gg |
342 |
Q |
| |
|
|| |
|
|
| T |
42578530 |
gg |
42578531 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 42578158 - 42578330
Alignment:
| Q |
1 |
ttcttcatcaactcgactttaatacatttatcaagactgtt----taccaatagaaaaagatggaaggaaccaccaggtattattagtctcaactagata |
96 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42578158 |
ttcttcatcaactcgactttaatacatttatcaagactgttaggttaccaatagaaaaagatggaaggaaccaccaggtattattagtctcaactagata |
42578257 |
T |
|
| Q |
97 |
tcatcaagtctgctgggcttgtcctcggaactagtcatcggaactacaactaccctcacaacactaacccctt |
169 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42578258 |
tcatcaagtctgctgagcttgtcctcggaactagtcatcggaactacaactaccctcacaacactaacccctt |
42578330 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 176 - 284
Target Start/End: Original strand, 42574677 - 42574786
Alignment:
| Q |
176 |
acagaattcaatccactcttttgcagcttaattcatcccactctaaaccatatagt-aacttcctgactttaatttcctcaaaatatctgggtttgcatg |
274 |
Q |
| |
|
||||||| ||| ||||| ||||||||||||| |||||| ||| |||||||| |||| |||||||||||||||| ||||||||||||| || ||||||||| |
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|
| T |
42574677 |
acagaatgcaacccactgttttgcagcttaactcatcctactttaaaccatttagtcaacttcctgactttaagttcctcaaaatatttgagtttgcatg |
42574776 |
T |
|
| Q |
275 |
ctatcccttt |
284 |
Q |
| |
|
|||||||||| |
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|
| T |
42574777 |
ctatcccttt |
42574786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 72 - 111
Target Start/End: Original strand, 42571038 - 42571077
Alignment:
| Q |
72 |
aggtattattagtctcaactagatatcatcaagtctgctg |
111 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
42571038 |
aggtattattagtctcaactagatatcaacaagtctgctg |
42571077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 312
Target Start/End: Original strand, 42609251 - 42609331
Alignment:
| Q |
232 |
aacttcctgactttaatttcctcaaaatatctgggtttgcatgctatccctttcttacaccctataaatccataagattgt |
312 |
Q |
| |
|
|||||||||||| || ||||||||||| | |||||||||| ||| ||||||| ||| ||||| | | ||| ||||||||| |
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|
| T |
42609251 |
aacttcctgactacaagttcctcaaaatgtttgggtttgcaagctttccctttgttagaccctttcattccgtaagattgt |
42609331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 287
Target Start/End: Complemental strand, 27869065 - 27868965
Alignment:
| Q |
188 |
ccactcttttgcagcttaattcatcccactctaaaccatatagt-aacttcctgactttaatttcctcaaaatatctgggtttgcatgctatccctttct |
286 |
Q |
| |
|
||||| ||||||||||||| |||| | ||| ||||| | || | |||||||||||| || ||||| ||||| || ||||||||||||||||||||||| |
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| T |
27869065 |
ccactgttttgcagcttaactcattctactataaactgtttaatcaacttcctgactacaagttcctaaaaatttcagggtttgcatgctatccctttct |
27868966 |
T |
|
| Q |
287 |
t |
287 |
Q |
| |
|
| |
|
|
| T |
27868965 |
t |
27868965 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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