View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18588_low_26 (Length: 330)
Name: NF18588_low_26
Description: NF18588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18588_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 11 - 314
Target Start/End: Original strand, 6269501 - 6269804
Alignment:
| Q |
11 |
cacagacacaacattacactataattaaagcaagnnnnnnnntatcaaagctacctagctctaaattaacatatatcaagatgggaagaaatagtggtga |
110 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6269501 |
cacagacacaacattacactataattaaagcaagaaaaaaaatatcaaagctacctagctctaaattaacatatatcaagatgggaagaaatagtggtga |
6269600 |
T |
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| Q |
111 |
attaggtcctaagatagtgcaaattgaaacacgatatgtacaaactgatgcagtgaacttcagagacgttgttcaaagccttactggaaaaaattcctcc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6269601 |
attaggtcctaagatagtgcaaattgaaacacgatatgtacaaactgatgcagtgaacttcagagacgttgttcaaagccttactggaaaaaattcctcc |
6269700 |
T |
|
| Q |
211 |
acagattggataggtcgaggaacaaatgccggcaacgctgcggccgctgcagcttcagagattaaaggaggacatatcaaggtagaggaagtggctattg |
310 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6269701 |
acagattggataggtcgaggaacaaatgccggcaccgctgcggccgctgcagcttcagagattaaaggaggacatatcaaggtagaggaagtggctattg |
6269800 |
T |
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| Q |
311 |
atac |
314 |
Q |
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|||| |
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| T |
6269801 |
atac |
6269804 |
T |
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