View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18588_low_3 (Length: 600)
Name: NF18588_low_3
Description: NF18588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18588_low_3 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 575; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 18 - 600
Target Start/End: Original strand, 5686145 - 5686727
Alignment:
| Q |
18 |
agcagaaccatcttatatgattgagttggtctttgcacataatatatttcttaattgaattgtttgctgcattttcacatttgttattctattgtaggtc |
117 |
Q |
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| T |
5686145 |
agcagaaccatcttatatgattgagttggtctttgcacataatatatttcttaattgaattgtttgctgcattttcacatttgttattctattgtaggtc |
5686244 |
T |
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| Q |
118 |
ggtattttgggctctgtttggggcaatctatctttgttttggtcttccagaagtctaccgtgttctttttgaagtcttcggaatggatccagatgatgag |
217 |
Q |
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| T |
5686245 |
ggtattttgggctttgtttggggcaatctatctttgttttggtcttccagaagtctaccgtgttctttttgaagtcttcggaatggatccagatgatgag |
5686344 |
T |
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| Q |
218 |
gattgccagcctagggagcgcagacaacttgaagatgtggattatgtatctgctgagtttgaaaacaagctaaactggcaagatattgttgcttataagg |
317 |
Q |
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| T |
5686345 |
gattgccagcctagggagcgcagacaacttgaagatgtggattatgtatctgctgagtttgaaaacaagctaaactggcaagatattgttgcttataagg |
5686444 |
T |
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| Q |
318 |
caagctatacatatcttctgttaagagtgttatttatttttaaaatgttagcacatcaagatccatttattatgagcaactgcacatagctcagacttgt |
417 |
Q |
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| T |
5686445 |
caagctatacatatcttctgttaagagtgttatttatttttaaaatgttagcacatcaagatccatttattatgagcaactgcacatagctcagacttgt |
5686544 |
T |
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| Q |
418 |
ttaatctgattacgtagctaattcaactgcgctttctgcacgattactaaattctgatgcaatattactttcctacaatcgaatgttcttatattgaggc |
517 |
Q |
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| T |
5686545 |
ttaatctgattacgtagctaattcaactgcgctttctgcacgattactaaattctgatgcaatattactttcctacaatcgaatgttcttatattgaggc |
5686644 |
T |
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| Q |
518 |
attaatgatgttcactgttcttcattcagcctcctgcagatgctctgtttactcatccaaggctgtttagagcatgtgttccc |
600 |
Q |
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| T |
5686645 |
ataaatgatgttcactgttcttcattcagcctcctgcagatgctctgtttactcatccaaggctgtttagagcatgtgttccc |
5686727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 8e-38; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 113 - 321
Target Start/End: Complemental strand, 39770619 - 39770411
Alignment:
| Q |
113 |
aggtcggtattttgggctctgtttggggcaatctatctttgttttggtcttccagaagtctaccgtgttctttttgaagtcttcggaatggatccagatg |
212 |
Q |
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| T |
39770619 |
aggtctgtcttttgggccttgtttggggcaatctatctgtgttttggtatgccggaagtgtatcgtattctttttgaagtttttggaatggatccagatg |
39770520 |
T |
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| Q |
213 |
atgaggattgccagcctagggagcgcagacaacttgaagatgtggattatgtatctgctgagtttgaaaacaagctaaactggcaagatattgttgctta |
312 |
Q |
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| T |
39770519 |
ctgaggaatgccagcccagattgcggaagcaacttgaagacatagatcatgtatctgctgaatttgaaggcaagctaagctggcaagatatggttgccta |
39770420 |
T |
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| Q |
313 |
taaggcaag |
321 |
Q |
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| T |
39770419 |
taaggcaag |
39770411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 531 - 600
Target Start/End: Complemental strand, 39770201 - 39770132
Alignment:
| Q |
531 |
actgttcttcattcagcctcctgcagatgctctgtttactcatccaaggctgtttagagcatgtgttccc |
600 |
Q |
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| T |
39770201 |
actgttctccattcagcctcctgcagatgccctttttgcacatccacggctgttcagagcttgtattccc |
39770132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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