View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18588_low_31 (Length: 309)
Name: NF18588_low_31
Description: NF18588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18588_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 38826137 - 38826443
Alignment:
| Q |
1 |
aacgctacaaaataagatcaaaaagttaacaaaaaactaacggatgaagctttcattgatctagtgcaacaagtagacataccaacatatagtgtgcgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38826137 |
aacgctacaaaataagatcaaaaagttaacaaaaaactaacggatgaagctttcattgatctagtgcaacaagtagacataccaacatatagtgtgcgaa |
38826236 |
T |
|
| Q |
101 |
ctgataatcgaagtgcaaatgtaggtgcaaattccatttgcttaaccaagagggtttcaatcatgtcaaacactggcattgcaaatatctgttgcttacn |
200 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38826237 |
ctgataatcggagtgcaaatgtaggtgcaaattccatttgcttaaccaagagggtttcaatcatgtcaaacactggcattgcaaatatctgttgcttac- |
38826335 |
T |
|
| Q |
201 |
nnnnnnntgttaatt---ataatataaaacatctaccaatgaccatatatat--taggtaaattcagtctcttatttacgaaattggtctctccttttct |
295 |
Q |
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|||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38826336 |
aaaaaaatgttaattataataatataaaacatcttccaatgaccatatatattataggtaaattcagtctcttatttacgaaattggtctctccttttct |
38826435 |
T |
|
| Q |
296 |
aaatcaat |
303 |
Q |
| |
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|||||||| |
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| T |
38826436 |
aaatcaat |
38826443 |
T |
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