View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18588_low_35 (Length: 282)

Name: NF18588_low_35
Description: NF18588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18588_low_35
NF18588_low_35
[»] chr4 (1 HSPs)
chr4 (23-265)||(44474095-44474337)
[»] chr8 (9 HSPs)
chr8 (14-265)||(38454003-38454254)
chr8 (14-261)||(39847983-39848227)
chr8 (23-140)||(34534099-34534216)
chr8 (16-141)||(34916661-34916786)
chr8 (28-233)||(38632290-38632485)
chr8 (18-141)||(36951056-36951179)
chr8 (36-141)||(34544941-34545046)
chr8 (221-263)||(36951394-36951436)
chr8 (20-94)||(38633138-38633212)
[»] chr3 (2 HSPs)
chr3 (14-142)||(7046884-7047012)
chr3 (164-265)||(7046202-7046304)
[»] chr6 (5 HSPs)
chr6 (15-145)||(14905165-14905295)
chr6 (23-124)||(14904772-14904873)
chr6 (62-141)||(14904962-14905041)
chr6 (62-111)||(14905406-14905455)
chr6 (61-141)||(14905583-14905663)
[»] chr2 (6 HSPs)
chr2 (16-141)||(32714012-32714137)
chr2 (16-141)||(32716426-32716551)
chr2 (21-141)||(32716638-32716758)
chr2 (21-144)||(32717259-32717382)
chr2 (20-141)||(32717051-32717172)
chr2 (21-141)||(32716845-32716965)
[»] chr5 (5 HSPs)
chr5 (20-145)||(2997941-2998066)
chr5 (71-144)||(2998198-2998271)
chr5 (20-109)||(2998561-2998650)
chr5 (18-113)||(2997732-2997827)
chr5 (21-102)||(2998355-2998436)


Alignment Details
Target: chr4 (Bit Score: 151; Significance: 6e-80; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 23 - 265
Target Start/End: Original strand, 44474095 - 44474337
Alignment:
Q  23 ggggatgtctacgttggtaacttcaaggatgaacttctgcatggcaatggaaagtacacatggtcagatggatcaatatatgagggtgattttgttgatg 122  Q
    ||||||||||||||||||| ||||||||||| |||||   ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44474095 ggggatgtctacgttggtatcttcaaggatggacttcctgatggcaacggaaagtacacatggtcagatggatcaatatatgagggtgattttgttgatg 44474194  T
Q  123 gagagatgacagggaaaggacgactattcacacaaccattaggagcaaagtatgagggtgacttctctcgggattgccgtcatggtaatggcacccaaac 222  Q
    || || || |||||||||||||||| ||   ||| |||| || | ||||||||||||| ||||||||| || ||| |||||||||||||||||||| |||    
T  44474195 gaaaggtggcagggaaaggacgactgttggtacagccatcagcatcaaagtatgagggcgacttctctgggaatttccgtcatggtaatggcaccctaac 44474294  T
Q  223 ttggaaggatggaactatctacattggaaattggaaaaaagat 265  Q
    || ||||||||||||||||||||||||||||||||||||||||    
T  44474295 tttgaaggatggaactatctacattggaaattggaaaaaagat 44474337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 144; Significance: 9e-76; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 14 - 265
Target Start/End: Complemental strand, 38454254 - 38454003
Alignment:
Q  14 tattcaaatggggatgtctacgttggtaacttcaaggatgaacttctgcatggcaatggaaagtacacatggtcagatggatcaatatatgagggtgatt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||| ||||| ||||  ||||||| |||||||||||||||    
T  38454254 tattcaaatggggatgtctacgttggtaacttcaaggatgaactttttcatggcaacggaaagttcacattgtcatgtggatcagtatatgagggtgatt 38454155  T
Q  114 ttgttgatggagagatgacagggaaaggacgactattcacacaaccattaggagcaaagtatgagggtgacttctctcgggattgccgtcatggtaatgg 213  Q
       |||||||||| ||| || ||||||||||| |||||  ||| |||| |||| |||| ||||||||||| |||||| | ||||||||||||||||||||    
T  38454154 ggattgatggagatatggcaaggaaaggacgattattcttacatccatgaggaccaaattatgagggtgagttctctggagattgccgtcatggtaatgg 38454055  T
Q  214 cacccaaacttggaaggatggaactatctacattggaaattggaaaaaagat 265  Q
    ||||||||||||||||||||||  |||||||| |||||||||||||||||||    
T  38454054 cacccaaacttggaaggatggaggtatctacactggaaattggaaaaaagat 38454003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 14 - 261
Target Start/End: Original strand, 39847983 - 39848227
Alignment:
Q  14 tattcaaatggggatgtctacgttggtaacttcaaggatgaacttctgcatggcaatggaaagtacacatggtcagatggatcaatatatgagggtgatt 113  Q
    |||||| ||| || ||| ||| |||||||| ||||||||| ||||   ||||||||  ||||||||||||||||||||||||||||||||| ||||||||    
T  39847983 tattcagatgagggtgtttacattggtaacatcaaggatggacttgctcatggcaaaagaaagtacacatggtcagatggatcaatatatgtgggtgatt 39848082  T
Q  114 ttgttgatggagagatgacagggaaaggacgactattcacacaaccattaggagcaaagtatgagggtgacttctctcgggattgccgtcatggtaatgg 213  Q
      ||||||||||| | |||||||||||||    | |||| ||| |||| |||||  |||||||||||||| |||| | || || |||||||||| |||||    
T  39848083 gggttgatggagataagacagggaaaggat---tgttcatacagccatcaggagacaagtatgagggtgaattctttgggaatcgccgtcatggcaatgg 39848179  T
Q  214 cacccaaacttggaaggatggaactatctacattggaaattggaaaaa 261  Q
    |||||||||||  ||| |||||  || |||| ||||||||||||||||    
T  39848180 cacccaaacttataagaatggaggtagctacgttggaaattggaaaaa 39848227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 23 - 140
Target Start/End: Complemental strand, 34534216 - 34534099
Alignment:
Q  23 ggggatgtctacgttggtaacttcaaggatgaacttctgcatggcaatggaaagtacacatggtcagatggatcaatatatgagggtgattttgttgatg 122  Q
    |||||||||||| ||||||||||||||| |||||||   |||||||| || ||||||||||||||||||||| ||||||||||||| ||||  |||||||    
T  34534216 ggggatgtctacattggtaacttcaagggtgaactttgtcatggcaacgggaagtacacatggtcagatggaacaatatatgagggcgattgggttgatg 34534117  T
Q  123 gagagatgacagggaaag 140  Q
    || | |||||||||||||    
T  34534116 gacaaatgacagggaaag 34534099  T

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Target: chr8; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 16 - 141
Target Start/End: Complemental strand, 34916786 - 34916661
Alignment:
Q  16 ttcaaatggggatgtctacgttggtaacttcaaggatgaacttctgcatggcaatggaaagtacacatggtcagatggatcaatatatgagggtgatttt 115  Q
    ||||||||||||||||||| ||||||| ||||||| ||||||||| |||||||  ||||||||||||||| || ||||| ||||||| |||||||| |      
T  34916786 ttcaaatggggatgtctacattggtaaattcaagggtgaacttctccatggcatgggaaagtacacatggacaaatggaacaatatacgagggtgactgg 34916687  T
Q  116 gttgatggagagatgacagggaaagg 141  Q
    ||||||||| |  |||||||||||||    
T  34916686 gttgatggaaaagtgacagggaaagg 34916661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 28 - 233
Target Start/End: Original strand, 38632290 - 38632485
Alignment:
Q  28 tgtctacgttggtaacttcaaggatgaacttctgcatggcaatggaaagtacacatggtcagatggatcaatatatgagggtgattttgttgatggagag 127  Q
    ||||||| ||||||||||||||| ||||||||  |||||||  ||||||| || ||||||||||||||||| ||||||||||||||  ||||| ||||||    
T  38632290 tgtctacattggtaacttcaagggtgaacttcgtcatggcagcggaaagtgcaaatggtcagatggatcaacatatgagggtgattgggttgacggagag 38632389  T
Q  128 atgacagggaaaggacgactattcacacaaccattaggagcaaagtatgagggtgacttctctcgggattgccgtcatggtaatggcacccaaacttgga 227  Q
    ||||          | |||| |||| | |  ||| |||||  |||||||||||||| |||| | || |||| |||||||| |||| ||||||||||||||    
T  38632390 atga----------aggactgttcatatattcatcaggagacaagtatgagggtgaattctttaggaattgtcgtcatggcaatgacacccaaacttgga 38632479  T

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Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 141
Target Start/End: Original strand, 36951056 - 36951179
Alignment:
Q  18 caaatggggatgtctacgttggtaacttcaaggatgaacttctgcatggcaatggaaagtacacatggtcagatggatcaatatatgagggtgattttgt 117  Q
    ||||||| ||||||||| ||||||| ||||||| |  |||||  || ||||| || |||||||||||||||||||||||  ||||||| || ||||   |    
T  36951056 caaatggtgatgtctacattggtaaattcaagggtatacttccccacggcaacgggaagtacacatggtcagatggatcggtatatgaaggggattggat 36951155  T
Q  118 tgatggagagatgacagggaaagg 141  Q
     |||||| | ||||||||||||||    
T  36951156 agatggaaaaatgacagggaaagg 36951179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 141
Target Start/End: Complemental strand, 34545046 - 34544941
Alignment:
Q  36 ttggtaacttcaaggatgaacttctgcatggcaatggaaagtacacatggtcagatggatcaatatatgagggtgattttgttgatggagagatgacagg 135  Q
    ||||||| |||| || |||| |||  |||||||  ||||||||||||||| || ||||| ||||||| |||||||| |  ||||||||| | ||||||||    
T  34545046 ttggtaaattcaggggtgaaattcctcatggcatcggaaagtacacatggacaaatggaacaatatacgagggtgactgggttgatggaaaaatgacagg 34544947  T
Q  136 gaaagg 141  Q
    ||||||    
T  34544946 gaaagg 34544941  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 221 - 263
Target Start/End: Original strand, 36951394 - 36951436
Alignment:
Q  221 acttggaaggatggaactatctacattggaaattggaaaaaag 263  Q
    |||||||| ||||||| |||||| |||||||||||||||||||    
T  36951394 acttggaatgatggaagtatctatattggaaattggaaaaaag 36951436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 38633138 - 38633212
Alignment:
Q  20 aatggggatgtctacgttggtaacttcaaggatgaacttctgcatggcaatggaaagtacacatggtcagatgga 94  Q
    |||||||||||| |  |||||||||||| |  | ||||||| |||| ||||||||| |||||||| |||||||||    
T  38633138 aatggggatgtcgatattggtaacttcaggagtaaacttctccatgtcaatggaaaatacacatgctcagatgga 38633212  T

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Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 14 - 142
Target Start/End: Complemental strand, 7047012 - 7046884
Alignment:
Q  14 tattcaaatggggatgtctacgttggtaacttcaaggatgaacttctgcatggcaatggaaagtacacatggtcagatggatcaatatatgagggtgatt 113  Q
    ||||||||||||  ||||||| ||| |||||| ||||   ||||||  |||||||| ||||| |||||||||||||||||||||||||||||||| ||||    
T  7047012 tattcaaatgggagtgtctacattgataactttaaggggcaacttcatcatggcaacggaaactacacatggtcagatggatcaatatatgagggagatt 7046913  T
Q  114 ttgttgatggagagatgacagggaaagga 142  Q
       ||||||| ||||||||||||||||||    
T  7046912 ggattgatggggagatgacagggaaagga 7046884  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 164 - 265
Target Start/End: Complemental strand, 7046304 - 7046202
Alignment:
Q  164 ggagcaaagtatgagggtgacttctctcgggattg-ccgtcatggtaatggcacccaaacttggaaggatggaactatctacattggaaattggaaaaaa 262  Q
    |||||||| ||||||||||| |||||| || |||  |||||||||||| |||||||| |||||||| ||||||| |  |||| |||||||||||||||||    
T  7046304 ggagcaaaatatgagggtgaattctctaggaatttaccgtcatggtaagggcacccagacttggaaagatggaaatgactacgttggaaattggaaaaaa 7046205  T
Q  263 gat 265  Q
    |||    
T  7046204 gat 7046202  T

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Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 145
Target Start/End: Complemental strand, 14905295 - 14905165
Alignment:
Q  15 attcaaatggggatgtctacgttggtaacttcaaggatgaacttctgcatggcaatggaaagtacacatggtcagatggatcaatatatgagggtgattt 114  Q
    |||| ||||||||||||||||||||||||||| || || | ||| | |||||||| ||||||| |||||||||||| |||  |||||||||||||||||     
T  14905295 attccaatggggatgtctacgttggtaacttcgagaataatcttttccatggcaagggaaagtgcacatggtcagagggagaaatatatgagggtgattg 14905196  T
Q  115 tgttgatggagagatgacagggaaaggacga 145  Q
     ||| |||||   | ||||||||||||||||    
T  14905195 ggtttatggaagcaggacagggaaaggacga 14905165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 23 - 124
Target Start/End: Complemental strand, 14904873 - 14904772
Alignment:
Q  23 ggggatgtctacgttggtaacttcaaggatgaacttctgcatggcaatggaaagtacacatggtcagatggatcaatatatgagggtgattttgttgatg 122  Q
    |||||||||||| |||||||||||||| |||| ||| | |||||||| ||||| |||||||||||  |||||  |||||||||||||||||  |||||||    
T  14904873 ggggatgtctacattggtaacttcaagaatgatcttttccatggcaaaggaaaatacacatggtcgaatggaaaaatatatgagggtgattgggttgatg 14904774  T
Q  123 ga 124  Q
    ||    
T  14904773 ga 14904772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 62 - 141
Target Start/End: Complemental strand, 14905041 - 14904962
Alignment:
Q  62 catggcaatggaaagtacacatggtcagatggatcaatatatgagggtgattttgttgatggagagatgacagggaaagg 141  Q
    |||||||| ||||||||||||||||||| ||||  ||||||||||||||| |  ||||||||| | | ||||||||||||    
T  14905041 catggcaagggaaagtacacatggtcaggtggacaaatatatgagggtgactgggttgatggaaaaaagacagggaaagg 14904962  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 111
Target Start/End: Complemental strand, 14905455 - 14905406
Alignment:
Q  62 catggcaatggaaagtacacatggtcagatggatcaatatatgagggtga 111  Q
    |||||||| ||||||||||||||||||||||||   ||||||||||||||    
T  14905455 catggcaagggaaagtacacatggtcagatggagagatatatgagggtga 14905406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 141
Target Start/End: Complemental strand, 14905663 - 14905583
Alignment:
Q  61 gcatggcaatggaaagtacacatggtcagatggatcaatatatgagggtgattttgttgatggagagatgacagggaaagg 141  Q
    ||||||||| |||| ||||| |||||||||||||   |||||||||||||| |  ||||| ||||| | ||| ||||||||    
T  14905663 gcatggcaaaggaatgtacagatggtcagatggacagatatatgagggtgactgggttgacggagaaaggactgggaaagg 14905583  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 141
Target Start/End: Original strand, 32714012 - 32714137
Alignment:
Q  16 ttcaaatggggatgtctacgttggtaacttcaaggatgaacttctgcatggcaatggaaagtacacatggtcagatggatcaatatatgagggtgatttt 115  Q
    ||||||||||||||||||| |||||    ||||||   ||| |  ||||||||| |||||||||||||||||| ||||| ||||||||||||||||||      
T  32714012 ttcaaatggggatgtctacattggttttgtcaagggaaaacgtaagcatggcaagggaaagtacacatggtcaaatggaacaatatatgagggtgattgg 32714111  T
Q  116 gttgatggagagatgacagggaaagg 141  Q
    ||||||||| | | ||||||||||||    
T  32714112 gttgatggaaaaaggacagggaaagg 32714137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 141
Target Start/End: Original strand, 32716426 - 32716551
Alignment:
Q  16 ttcaaatggggatgtctacgttggtaacttcaaggatgaacttctgcatggcaatggaaagtacacatggtcagatggatcaatatatgagggtgatttt 115  Q
    ||||||||||||||||||| |||||    ||||||   ||| |  ||||||||| |||||||||||||||||| ||||| ||||||||||||||||||      
T  32716426 ttcaaatggggatgtctacattggttttgtcaagggaaaacgtaagcatggcaagggaaagtacacatggtcaaatggaacaatatatgagggtgattgg 32716525  T
Q  116 gttgatggagagatgacagggaaagg 141  Q
    ||||||||| | | ||||||||||||    
T  32716526 gttgatggaaaaaggacagggaaagg 32716551  T

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Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 21 - 141
Target Start/End: Original strand, 32716638 - 32716758
Alignment:
Q  21 atggggatgtctacgttggtaacttcaaggatgaacttctgcatggcaatggaaagtacacatggtcagatggatcaatatatgagggtgattttgttga 120  Q
    |||||| | ||||||||||||||||| ||  ||| ||| | |||||||| ||||||||||| |||| | ||||| ||||||||||||||||||  |||||    
T  32716638 atgggggtatctacgttggtaacttcgagagtgatcttttccatggcaagggaaagtacacgtggttaaatggaacaatatatgagggtgattgggttga 32716737  T
Q  121 tggagagatgacagggaaagg 141  Q
    |||| | | ||||||||||||    
T  32716738 tggaaaaaggacagggaaagg 32716758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 144
Target Start/End: Original strand, 32717259 - 32717382
Alignment:
Q  21 atggggatgtctacgttggtaacttcaaggatgaacttctgcatggcaatggaaagtacacatggtcagatggatcaatatatgagggtgattttgttga 120  Q
    |||||||| ||||| ||||||||||| ||  ||| |||   |||||||| |||||||||||||||| ||||||| ||||||| ||||||||||  |||||    
T  32717259 atggggatatctacattggtaacttcgagagtgatctttaccatggcaaaggaaagtacacatggttagatggaacaatatacgagggtgattgggttga 32717358  T
Q  121 tggagagatgacagggaaaggacg 144  Q
    ||||   | |||||||||||||||    
T  32717359 tggaagaaggacagggaaaggacg 32717382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 141
Target Start/End: Original strand, 32717051 - 32717172
Alignment:
Q  20 aatggggatgtctacgttggtaacttcaaggatgaacttctgcatggcaatggaaagtacacatggtcagatggatcaatatatgagggtgattttgttg 119  Q
    |||||| |||||||| ||||||||||||||  ||| ||| |  ||||||| ||||||||||||||| ||||||||  |||||| ||||||||||  ||||    
T  32717051 aatgggcatgtctacattggtaacttcaagagtgatcttttcaatggcaagggaaagtacacatggccagatggagaaatatacgagggtgattgggttg 32717150  T
Q  120 atggagagatgacagggaaagg 141  Q
    |||||   ||||| ||||||||    
T  32717151 atggaagaatgactgggaaagg 32717172  T

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Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 141
Target Start/End: Original strand, 32716845 - 32716965
Alignment:
Q  21 atggggatgtctacgttggtaacttcaaggatgaacttctgcatggcaatggaaagtacacatggtcagatggatcaatatatgagggtgattttgttga 120  Q
    |||||| | ||||||||||||||||| ||  ||| ||| | |||||||| |||||||||||||||||| ||||| ||||||| || |||||||  |||||    
T  32716845 atgggggtatctacgttggtaacttcgagagtgatcttttccatggcaaaggaaagtacacatggtcacatggaacaatatacgatggtgattgggttga 32716944  T
Q  121 tggagagatgacagggaaagg 141  Q
    ||||   | ||||||||||||    
T  32716945 tggaagaaggacagggaaagg 32716965  T

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Target: chr5 (Bit Score: 47; Significance: 7e-18; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 20 - 145
Target Start/End: Original strand, 2997941 - 2998066
Alignment:
Q  20 aatggggatgtctacgttggtaacttcaaggatgaacttctgcatggcaatggaaagtacacatggtcagatggatcaatatatgagggtgattttgttg 119  Q
    ||||||||||||| | ||||||||||  |  |||| ||| | |||||||| ||||||||||||||||||  |||| ||||||||||||||||||  ||||    
T  2997941 aatggggatgtcttcattggtaactttgaaaatgatcttttccatggcaagggaaagtacacatggtcaagtggaacaatatatgagggtgattgggttg 2998040  T
Q  120 atggagaga-tgacagggaaaggacga 145  Q
    ||||| |||  ||||||||||||||||    
T  2998041 atgga-agacggacagggaaaggacga 2998066  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 144
Target Start/End: Original strand, 2998198 - 2998271
Alignment:
Q  71 ggaaagtacacatggtcagatggatcaatatatgagggtgattttgttgatggagagatgacagggaaaggacg 144  Q
    |||||| ||||||||||| ||||| ||||||||||||||||||  ||||||| | | | |||||||||||||||    
T  2998198 ggaaagcacacatggtcaaatggaacaatatatgagggtgattgggttgatgaacaaaggacagggaaaggacg 2998271  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 2998561 - 2998650
Alignment:
Q  20 aatggggatgtctacgttggtaacttcaaggatgaacttctgcatggcaatggaaagtacacatggtcagatggatcaatatatgagggt 109  Q
    ||||||||| ||||||||||||||||| || ||||  || | |||||||| |||||||||||||| | | || || ||||||||||||||    
T  2998561 aatggggatatctacgttggtaacttcgagaatgatatttttcatggcaagggaaagtacacatgtttaaatagaacaatatatgagggt 2998650  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 2997732 - 2997827
Alignment:
Q  18 caaatggggatgtctacgttggtaacttcaaggatgaacttctgcatggcaatggaaagtacacatggtcagatggatcaatatatgagggtgatt 113  Q
    |||||||| |||||||| ||||||| || ||||   || || | |||||||| ||||||||||||||||||  |||| |||| |||||||||||||    
T  2997732 caaatgggcatgtctacattggtaattttaagggaaaattttttcatggcaagggaaagtacacatggtcaagtggaacaatctatgagggtgatt 2997827  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 102
Target Start/End: Original strand, 2998355 - 2998436
Alignment:
Q  21 atggggatgtctacgttggtaacttcaaggatgaacttctgcatggcaatggaaagtacacatggtcagatggatcaatata 102  Q
    |||||||| ||||||||||||||||| |  | || ||| | |||||||| ||||||||||  |||||| ||||| |||||||    
T  2998355 atggggatatctacgttggtaacttcgataacgatcttttccatggcaacggaaagtacatgtggtcaaatggaacaatata 2998436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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