View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18588_low_37 (Length: 267)
Name: NF18588_low_37
Description: NF18588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18588_low_37 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 14 - 267
Target Start/End: Complemental strand, 29157920 - 29157667
Alignment:
| Q |
14 |
atcatataaaactaccactgcatagactaaatcaaataatccaccaatggctaaacaagcaagatgactagacatccattgaagaatcgaagatttgaaa |
113 |
Q |
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| T |
29157920 |
atcatataaaactaccactacatagactaaatcaaataatccaccaatggctaaacaagcaagatgactagacatccattgaagaatcgaagatttgaaa |
29157821 |
T |
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| Q |
114 |
catttatctttttgccacactgctttaccaaagaattaaactaacagcctctacgggagtagtaaattagacatagactcattatgaaaaccactactaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
29157820 |
catttatctttttgccacactgctttaccaaagaattaaactaacagcctctacgggagtagtaaattagacatagacccattacgaaaaccactactaa |
29157721 |
T |
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| Q |
214 |
tatgcatctggccaatccatcaggacaacgtcaactaagaagaataggctttcc |
267 |
Q |
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| T |
29157720 |
tatgcatctggccaatccatcaagacaacgtcaactaagaagaataggctttcc |
29157667 |
T |
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Target: chr2 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 34 - 186
Target Start/End: Original strand, 28624755 - 28624907
Alignment:
| Q |
34 |
catagactaaatcaaataatccaccaatggctaaacaagcaagatgactagacatccattgaagaatcgaagatttgaaacatttatctttttgccacac |
133 |
Q |
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|||||| ||||||||| ||||||| |||| ||||||||||||||| |||||||||||||| |||| || ||||||||||||| ||||||| |||||| |
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| T |
28624755 |
catagattaaatcaaagaatccacaaatgctgaaacaagcaagatgattagacatccattgagcaatcaaatatttgaaacatttttctttttcccacac |
28624854 |
T |
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| Q |
134 |
tgctttaccaaagaattaaactaacagcctctacgggagtagtaaattagaca |
186 |
Q |
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| T |
28624855 |
tgctttaccaaagaattaaactaacagcctgtacgggagtagtaaattagaca |
28624907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 22 - 96
Target Start/End: Original strand, 11982143 - 11982217
Alignment:
| Q |
22 |
aaactaccactgcatagactaaatcaaataatccaccaatggctaaacaagcaagatgactagacatccattgaa |
96 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11982143 |
aaactaccactgcataaactaaatcaaataatccaccaatggctaaacaagcaagatgactagacatccattgaa |
11982217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 22 - 96
Target Start/End: Complemental strand, 18770468 - 18770394
Alignment:
| Q |
22 |
aaactaccactgcatagactaaatcaaataatccaccaatggctaaacaagcaagatgactagacatccattgaa |
96 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18770468 |
aaactaccactgcataaactaaatcaaataatccaccaatggctaaacaagcaagatgactagacatccattgaa |
18770394 |
T |
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