View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18588_low_38 (Length: 265)
Name: NF18588_low_38
Description: NF18588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18588_low_38 |
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| [»] scaffold0328 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 144; Significance: 8e-76; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 32 - 207
Target Start/End: Original strand, 41940028 - 41940203
Alignment:
| Q |
32 |
tgcaaactttaattaatttgcatatactataaagcatgaaaggatttacttcctctcctttttataagagacagatgaatcaacaaaagttgatatattt |
131 |
Q |
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| T |
41940028 |
tgcaaactttaattaatttgcatatactataaagcatgaaagaatttacttcctgtcttttttataagagacagatgaatcaacaaaaattaatatattt |
41940127 |
T |
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| Q |
132 |
gatttatattataaactacatatactaatttttaacaactcatttgtctcttaattttcaactatttgagccattt |
207 |
Q |
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| T |
41940128 |
gatttatattataaactacatataataatttttaacgactcatttgtctcttaatttgcaactatttgagccattt |
41940203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 252
Target Start/End: Original strand, 41940214 - 41940242
Alignment:
| Q |
224 |
ctcatttgaactttttgtcattaattaat |
252 |
Q |
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| T |
41940214 |
ctcatttgaactttttgtcattaattaat |
41940242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 89 - 142
Target Start/End: Original strand, 6282573 - 6282626
Alignment:
| Q |
89 |
ctttttataagagacagatgaatcaacaaaagttgatatatttgatttatatta |
142 |
Q |
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| T |
6282573 |
ctttttataagagacaaatgagtcaacaaaaattaatatatttggtttatatta |
6282626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 89 - 140
Target Start/End: Original strand, 5978372 - 5978422
Alignment:
| Q |
89 |
ctttttataagagacagatgaatcaacaaaagttgatatatttgatttatat |
140 |
Q |
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| T |
5978372 |
ctttttataagagacatacgaatcaacaaaag-tgatatatttaatttatat |
5978422 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 132
Target Start/End: Complemental strand, 10048618 - 10048576
Alignment:
| Q |
90 |
tttttataagagacagatgaatcaacaaaagttgatatatttg |
132 |
Q |
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| T |
10048618 |
tttttataagaaacaaatgaatcaacaaaagttgatgtatttg |
10048576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 90 - 139
Target Start/End: Original strand, 27918098 - 27918147
Alignment:
| Q |
90 |
tttttataagagacagatgaatcaacaaaagttgatatatttgatttata |
139 |
Q |
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|||||| || ||||| |||| |||||||||||||||||||||||| |||| |
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| T |
27918098 |
tttttaaaaaagacaaatgagtcaacaaaagttgatatatttgatctata |
27918147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0328 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0328
Description:
Target: scaffold0328; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 5840 - 5795
Alignment:
| Q |
90 |
tttttataagagacagatgaatcaacaaaagttgatatatttgatt |
135 |
Q |
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| T |
5840 |
tttttataagagacaaataaatcaacaaaaattaatatatttgatt |
5795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 33012984 - 33012936
Alignment:
| Q |
87 |
tcctttttataagagacagatgaatcaacaaaagttgatatatttgatt |
135 |
Q |
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| T |
33012984 |
tcctttttataagagacaaatggattaactaaagttgatgtatttgatt |
33012936 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 142
Target Start/End: Original strand, 1111190 - 1111242
Alignment:
| Q |
90 |
tttttataagagacagatgaatcaacaaaagttgatatatttgatttatatta |
142 |
Q |
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||||||||||||| | ||| ||||| ||||||||||||||||||||| |||| |
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| T |
1111190 |
tttttataagagagaaatgggtcaaccaaagttgatatatttgatttacatta |
1111242 |
T |
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