View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18588_low_44 (Length: 255)
Name: NF18588_low_44
Description: NF18588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18588_low_44 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 115541 - 115301
Alignment:
| Q |
1 |
cactgattgctgattcatcatccttatcctcggagactgattcgttgttgatgataaagatgtggcggtcgaggtcaattttgattggacgccagtgttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
115541 |
cactgattgctgattcatcatccttatcctcggagactgattcgttgttgatgataaagatgtggcggtcgaggtcaattttgattggacgccagtgttc |
115442 |
T |
|
| Q |
101 |
aacacctcgatggtcacgaaccatgaggctagtgaaccttggatgttggagcataactgagttttgaatttgggtttttactgaatcaacatcgattggt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
115441 |
aacacctcgatggtcacgaaccatgaggctagtgaaccttggatgttggagcataactgagttttggatttgggtttttactgaatcaacatcgattggt |
115342 |
T |
|
| Q |
201 |
ttcttcaaccctatgacacagtggattatttggttcatctc |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
115341 |
ttcttcaaccctatgacacagtggattatttggttcatctc |
115301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 47 - 241
Target Start/End: Complemental strand, 14832543 - 14832349
Alignment:
| Q |
47 |
gttgatgataaagatgtggcggtcgaggtcaattttgattggacgccagtgttcaacacctcgatggtcacgaaccatgaggctagtgaaccttggatgt |
146 |
Q |
| |
|
||||||||| ||||| |||||| |||||| ||||| |||||| || |||||||||| |||||||||||||| |||||||| || || |||||||||||| |
|
|
| T |
14832543 |
gttgatgatgaagattcggcggttgaggtcgattttaattggatgctagtgttcaacgcctcgatggtcacggaccatgagacttgtaaaccttggatgt |
14832444 |
T |
|
| Q |
147 |
tggagcataactgagttttgaatttgggtttttactgaatcaacatcgattggtttcttcaaccctatgacacagtggattatttggttcatctc |
241 |
Q |
| |
|
||||||||||| ||||| || |||||| | |||||||| |||||||| ||||| ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
14832443 |
tggagcataacagagttctggatttggttatttactgagtcaacatcaattggattcttcagacctatgacacagtggattatttggttcatctc |
14832349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University