View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18588_low_51 (Length: 238)
Name: NF18588_low_51
Description: NF18588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18588_low_51 |
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Alignment Details
Target: chr7 (Bit Score: 160; Significance: 2e-85; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 29 - 196
Target Start/End: Complemental strand, 25978773 - 25978606
Alignment:
| Q |
29 |
tattgccgtggtattaagaagtgctgaaaaaggagccaccaaaaactctcggatttggaagaatgttaaacccttcttcgagtggcttcagagtgcaatt |
128 |
Q |
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| T |
25978773 |
tattgccgtggtattaagaagtgctgaaaaaggagccaccaaaaactctcggatttggaagaatgttaaacccttcttcgagtggcttcagagtgcgatt |
25978674 |
T |
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| Q |
129 |
cagagacggaggaagagttgtgtgctggaattctttacatctgttgctaattagtttgtctcttttat |
196 |
Q |
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| T |
25978673 |
cagagacggaggaagagttgtgtgctggaattctttacatctgttgctaattagtttgtgtcttttat |
25978606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 72 - 176
Target Start/End: Complemental strand, 25973375 - 25973271
Alignment:
| Q |
72 |
aactctcggatttggaagaatgttaaacccttcttcgagtggcttcagagtgcaattcagagacggaggaagagttgtgtgctggaattctttacatctg |
171 |
Q |
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| T |
25973375 |
aactctcagatttggaagaatgttaaacccttcttcgagtggcttcagagtgcgaatcagagacggaggaagagtcgtgtgctggaattgtttaaatttg |
25973276 |
T |
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| Q |
172 |
ttgct |
176 |
Q |
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| T |
25973275 |
ttgct |
25973271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 144
Target Start/End: Original strand, 31829776 - 31829899
Alignment:
| Q |
20 |
aagagcatgtattgccgtggtattaagaagtgctgaaaaaggagccaccaaaaactctcggatttggaagaatgttaaacccttcttcgagtggcttcag |
119 |
Q |
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| T |
31829776 |
aagagcacatattgcagtggtatcaagaagggctgaaa--ggagacaccaaaaatgctcagatttggaagaatgtgaaacccttcattgaatggcttcag |
31829873 |
T |
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| Q |
120 |
agtgca-attcagagacggaggaaga |
144 |
Q |
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| T |
31829874 |
agtgcagagtcagagtcggaggaaga |
31829899 |
T |
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