View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18588_low_54 (Length: 236)
Name: NF18588_low_54
Description: NF18588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18588_low_54 |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 15 - 218
Target Start/End: Complemental strand, 40171685 - 40171482
Alignment:
| Q |
15 |
cacagagaattgaaatgggcaattgttgaggatttacttgctaatatggtggatgccaagggaaacactgcacttcatataacttccataactattgtga |
114 |
Q |
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| T |
40171685 |
cacagagaattgaaatgggcaattgttgaggatttacttgctaatatggtggatgccaagggaaacactgcacttcatataacttccataactattgtga |
40171586 |
T |
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| Q |
115 |
taggcagagaacacaagtccctctgccagacaaaaaactttaaagtctaaataagccaaagattgacgtaggtagtcctatacaaagaattgaaatgggc |
214 |
Q |
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| T |
40171585 |
taggcagagaacacaagtccctctgccagacaaaaaactttaaagtctaaataagccaaagattgacgtaggtagtcctatacaaagaattgaaatgggc |
40171486 |
T |
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| Q |
215 |
aatt |
218 |
Q |
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|||| |
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| T |
40171485 |
aatt |
40171482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 52 - 97
Target Start/End: Complemental strand, 40421827 - 40421782
Alignment:
| Q |
52 |
ttgctaatatggtggatgccaagggaaacactgcacttcatataac |
97 |
Q |
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| T |
40421827 |
ttgctaatatggtggatgccaagggaaacactgcacttcatataac |
40421782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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