View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18588_low_56 (Length: 234)
Name: NF18588_low_56
Description: NF18588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18588_low_56 |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 20 - 226
Target Start/End: Complemental strand, 23988418 - 23988212
Alignment:
| Q |
20 |
tgttcgcccaaaagtggatttccaccggtacctaatccaccagtcataagctctccaattttaatagggtttttagcagccaaatgcaacaacgctgtat |
119 |
Q |
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| T |
23988418 |
tgttcgcccaaaagtggatttccaccggtacctaatccaccagtcataagctctccaattttaatagggtttttagcagccaaatgcaacaacgctgtat |
23988319 |
T |
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| Q |
120 |
ttattgcatagaagtcctccacctctgaaaaacacgaattctcaataatttgattgttttcaactatagattcatcgtttatttcagttgtgtcattatt |
219 |
Q |
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||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||| |||| || |||||||||||||||||||||||| |
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| T |
23988318 |
ttattgcatagaagtcctccacctccgaaaaactcgaattctcaataattttgttgttttcaactacagatggattgtttatttcagttgtgtcattatt |
23988219 |
T |
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| Q |
220 |
gatgatg |
226 |
Q |
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||||||| |
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| T |
23988218 |
gatgatg |
23988212 |
T |
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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 182 - 226
Target Start/End: Original strand, 33053888 - 33053932
Alignment:
| Q |
182 |
actatagattcatcgtttatttcagttgtgtcattattgatgatg |
226 |
Q |
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| T |
33053888 |
actacagattcatcgtttatttcagttatgtcattattgatgatg |
33053932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 180 - 226
Target Start/End: Original strand, 34988627 - 34988673
Alignment:
| Q |
180 |
caactatagattcatcgtttatttcagttgtgtcattattgatgatg |
226 |
Q |
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| T |
34988627 |
caactacagatgcatcgtttatttcagttgtgtcattactgatgatg |
34988673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 174
Target Start/End: Original strand, 13991095 - 13991133
Alignment:
| Q |
136 |
ctccacctctgaaaaacacgaattctcaataatttgatt |
174 |
Q |
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| T |
13991095 |
ctccacctttgaaaaactcgaattctcaataatttgatt |
13991133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 41108248 - 41108280
Alignment:
| Q |
20 |
tgttcgcccaaaagtggatttccaccggtacct |
52 |
Q |
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| T |
41108248 |
tgttcgcccaaaagtggattcccaccggtacct |
41108280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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