View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18588_low_58 (Length: 228)

Name: NF18588_low_58
Description: NF18588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18588_low_58
NF18588_low_58
[»] chr1 (4 HSPs)
chr1 (1-224)||(34989522-34989745)
chr1 (5-224)||(2305427-2305646)
chr1 (139-224)||(34975687-34975772)
chr1 (140-224)||(34980467-34980551)
[»] chr3 (18 HSPs)
chr3 (5-224)||(22657008-22657227)
chr3 (5-224)||(22620856-22621075)
chr3 (7-191)||(22648128-22648312)
chr3 (7-221)||(22615212-22615426)
chr3 (6-193)||(22034853-22035040)
chr3 (6-219)||(22115395-22115608)
chr3 (17-193)||(30989259-30989435)
chr3 (6-219)||(21930731-21930944)
chr3 (23-219)||(22431133-22431329)
chr3 (20-219)||(22367884-22368083)
chr3 (17-103)||(22357956-22358042)
chr3 (17-157)||(22187360-22187500)
chr3 (17-100)||(22436588-22436671)
chr3 (23-157)||(22028372-22028506)
chr3 (110-219)||(22630485-22630594)
chr3 (22-66)||(18966946-18966990)
chr3 (17-216)||(22458443-22458642)
chr3 (17-216)||(22481424-22481623)
[»] scaffold1439 (2 HSPs)
scaffold1439 (1-156)||(1531-1686)
scaffold1439 (140-224)||(1714-1798)
[»] chr5 (2 HSPs)
chr5 (5-184)||(40580333-40580512)
chr5 (130-213)||(40580244-40580327)


Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 34989745 - 34989522
Alignment:
Q  1 ttccaagtcaaattgaaatgccttcttattgaacaaatcaattgattgttcttcagttaaaggttgtagttcatgcacttcaataaacgaagatttctta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  34989745 ttccaagtcaaattgaaatgccttcttattgaacaaatcaattgattgttcttcagttaatggttgtagttcatgcacttcaataaatgaagatttctta 34989646  T
Q  101 caatacatggcaacatccttatttcttctggtaataaatatcttactaccatttttatcatcactcacatcatattcaatctcatcccaaaaacttgtgt 200  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  34989645 caatacatggcaacatccttatttcttgtggtaataaatatcttactaccatttttattatcactcacaacatattcaatctcatcccaaaaacttgtgt 34989546  T
Q  201 tccatacatcatcaaacacaaaaa 224  Q
    ||||||||||||||||||||||||    
T  34989545 tccatacatcatcaaacacaaaaa 34989522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 5 - 224
Target Start/End: Original strand, 2305427 - 2305646
Alignment:
Q  5 aagtcaaattgaaatgccttcttattgaacaaatcaattgattgttcttcagttaaaggttgtagttcatgcacttcaataaacgaagatttcttacaat 104  Q
    |||||||||||||||||||||||||| |||||||||| | ||| ||| ||||||||| |||||||||||||||||| |||||| ||||||||||||||||    
T  2305427 aagtcaaattgaaatgccttcttattaaacaaatcaaattatttttcctcagttaaaagttgtagttcatgcacttgaataaaagaagatttcttacaat 2305526  T
Q  105 acatggcaacatccttatttcttctggtaataaatatcttactaccatttttatcatcactcacatcatattcaatctcatcccaaaaacttgtgttcca 204  Q
    | |||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||    
T  2305527 atatggcaacatccatatttcttgtggtaataaatatcttactaccatttttatgatcactcatagcatattcaatctcatcccaaaaacttgtgttcca 2305626  T
Q  205 tacatcatcaaacacaaaaa 224  Q
    ||||| ||||||||||||||    
T  2305627 tacattatcaaacacaaaaa 2305646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 139 - 224
Target Start/End: Complemental strand, 34975772 - 34975687
Alignment:
Q  139 tatcttactaccatttttatcatcactcacatcatattcaatctcatcccaaaaacttgtgttccatacatcatcaaacacaaaaa 224  Q
    |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34975772 tatcttactaccatttttattatcactcacaacatattcaatctcatcccaaaaacttgtgttccatacatcatcaaacacaaaaa 34975687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 140 - 224
Target Start/End: Complemental strand, 34980551 - 34980467
Alignment:
Q  140 atcttactaccatttttatcatcactcacatcatattcaatctcatcccaaaaacttgtgttccatacatcatcaaacacaaaaa 224  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34980551 atcttactaccatttttattatcactcacaacatattcaatctcatcccaaaaacttgtgttccatacatcatcaaacacaaaaa 34980467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 5 - 224
Target Start/End: Original strand, 22657008 - 22657227
Alignment:
Q  5 aagtcaaattgaaatgccttcttattgaacaaatcaattgattgttcttcagttaaaggttgtagttcatgcacttcaataaacgaagatttcttacaat 104  Q
    |||||||||||||| ||||||||||| ||||| ||||  ||||||||| | |||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  22657008 aagtcaaattgaaaggccttcttattaaacaactcaaaagattgttctactgttaaaggatgtagttcatgcacttcaataaaagaagatttcttacaat 22657107  T
Q  105 acatggcaacatccttatttcttctggtaataaatatcttactaccatttttatcatcactcacatcatattcaatctcatcccaaaaacttgtgttcca 204  Q
    |||  ||||||||| |||||||| | ||||||||||||||||| |||||||||| |||||  ||| |||||||||||||||||||||||||| |||||||    
T  22657108 acaccgcaacatccatatttcttgttgtaataaatatcttactcccatttttatgatcaccaacagcatattcaatctcatcccaaaaacttttgttcca 22657207  T
Q  205 tacatcatcaaacacaaaaa 224  Q
    ||||||||||||||||||||    
T  22657208 tacatcatcaaacacaaaaa 22657227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 5 - 224
Target Start/End: Original strand, 22620856 - 22621075
Alignment:
Q  5 aagtcaaattgaaatgccttcttattgaacaaatcaattgattgttcttcagttaaaggttgtagttcatgcacttcaataaacgaagatttcttacaat 104  Q
    ||||||||| ||||| |||||||||||||||| ||||  |||||||| |||||||||||||||||||||||||| |||||||| |||||||| |||||||    
T  22620856 aagtcaaatcgaaataccttcttattgaacaactcaaaagattgttcctcagttaaaggttgtagttcatgcacctcaataaaagaagattttttacaat 22620955  T
Q  105 acatggcaacatccttatttcttctggtaataaatatcttactaccatttttatcatcactcacatcatattcaatctcatcccaaaaacttgtgttcca 204  Q
    | || ||||||||| || ||||| | ||||| ||||||||||| |||||||||| |||| ||||| |||  || || |||| |||||||  | || ||||    
T  22620956 aaatagcaacatccatacttcttgttgtaatcaatatcttactcccatttttattatcaatcacaacatgctctatttcattccaaaaatctatggtcca 22621055  T
Q  205 tacatcatcaaacacaaaaa 224  Q
    |||||||||||| |||||||    
T  22621056 tacatcatcaaatacaaaaa 22621075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 7 - 191
Target Start/End: Original strand, 22648128 - 22648312
Alignment:
Q  7 gtcaaattgaaatgccttcttattgaacaaatcaattgattgttcttcagttaaaggttgtagttcatgcacttcaataaacgaagatttcttacaatac 106  Q
    |||||| ||||||| |||||| |||||||| ||||  |||||||| |  ||||||||||| | ||||| ||||||||| || |||||||||||||||||     
T  22648128 gtcaaactgaaatgtcttcttgttgaacaactcaaaagattgttcatttgttaaaggttgcaattcatacacttcaatgaaagaagatttcttacaatat 22648227  T
Q  107 atggcaacatccttatttcttctggtaataaatatcttactaccatttttatcatcactcacatcatattcaatctcatcccaaa 191  Q
    |||||||||||| |||||||| | ||||||||||||||||| |||||||||| |||| |||   ||| |||||||||||||||||    
T  22648228 atggcaacatccatatttcttgttgtaataaatatcttactcccatttttattatcaatcaatgcattttcaatctcatcccaaa 22648312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 7 - 221
Target Start/End: Original strand, 22615212 - 22615426
Alignment:
Q  7 gtcaaattgaaatgccttcttattgaacaaatcaattgattgttcttcagttaaaggttgtagttcatgcacttcaataaacgaagatttcttacaatac 106  Q
    |||||||||||||||||||||||| ||||| || |  ||||||||||||||||||||||| |  ||||||||||  |  ||||||||| |||||||| |     
T  22615212 gtcaaattgaaatgccttcttattaaacaactccagagattgttcttcagttaaaggttgcaactcatgcactttgactaacgaagatctcttacaagaa 22615311  T
Q  107 atggcaacatccttatttcttctggtaataaatatcttactaccatttttatcatcactcacatcatattcaatctcatcccaaaaacttgtgttccata 206  Q
    |  ||||||||  |||| ||| | || |||||||||||||| |||||||||| |||| | ||| || |||||||||||| |||||||    |||||||||    
T  22615312 agtgcaacatctatattccttgttgttataaatatcttacttccatttttattatcaattacagcagattcaatctcattccaaaaatgcatgttccata 22615411  T
Q  207 catcatcaaacacaa 221  Q
    |||||||||||||||    
T  22615412 catcatcaaacacaa 22615426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 6 - 193
Target Start/End: Complemental strand, 22035040 - 22034853
Alignment:
Q  6 agtcaaattgaaatgccttcttattgaacaaatcaattgattgttcttcagttaaaggttgtagttcatgcacttcaataaacgaagatttcttacaata 105  Q
    |||||||||  |||||||||||||||||||| |  | ||||||||||| |||||||||||| || ||| |||| ||||| || |||||||| |||||| |    
T  22035040 agtcaaatttgaatgccttcttattgaacaacttcaatgattgttcttgagttaaaggttgcagctcaagcacctcaatgaaagaagattttttacaaga 22034941  T
Q  106 catggcaacatccttatttcttctggtaataaatatcttactaccatttttatcatcactcacatcatattcaatctcatcccaaaaa 193  Q
    ||   |||||||| | |||||| | || |||||||||||||| |||||||||  |||| | |||  | ||||||| ||||||||||||    
T  22034940 caacacaacatccatgtttcttgttgttataaatatcttacttccatttttactatcaattacagaaaattcaatatcatcccaaaaa 22034853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 6 - 219
Target Start/End: Complemental strand, 22115608 - 22115395
Alignment:
Q  6 agtcaaattgaaatgccttcttattgaacaaatcaattgattgttcttcagttaaaggttgtagttcatgcacttcaataaacgaagatttcttacaata 105  Q
    |||||||||  |||||||||||||||||||| |  | ||||||||||| |||||||||||| || | | |||| ||||| || |||||||| |||||| |    
T  22115608 agtcaaatttgaatgccttcttattgaacaacttcaatgattgttcttgagttaaaggttgcagctaaagcacctcaatgaaagaagattttttacaaga 22115509  T
Q  106 catggcaacatccttatttcttctggtaataaatatcttactaccatttttatcatcactcacatcatattcaatctcatcccaaaaacttgtgttccat 205  Q
    ||   |||||||| | |||||| | || |||||||||||||| |||||||||  |||| | |||  | ||||||| ||||||||||||  |   |||||     
T  22115508 caacacaacatccatgtttcttgttgttataaatatcttacttccatttttactatcaattacagaaaattcaatatcatcccaaaaatgtacattccaa 22115409  T
Q  206 acatcatcaaacac 219  Q
    ||||||||||||||    
T  22115408 acatcatcaaacac 22115395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 17 - 193
Target Start/End: Original strand, 30989259 - 30989435
Alignment:
Q  17 aatgccttcttattgaacaaatcaattgattgttcttcagttaaaggttgtagttcatgcacttcaataaacgaagatttcttacaatacatggcaacat 116  Q
    |||||||||||||||||||| || |  ||||||| |||| |||||||||| |  ||| ||||||||||| | |||||||| |||||| |||   ||||||    
T  30989259 aatgccttcttattgaacaactccaaagattgttgttcatttaaaggttgcaactcaagcacttcaatataagaagattttttacaagacaacacaacat 30989358  T
Q  117 ccttatttcttctggtaataaatatcttactaccatttttatcatcactcacatcatattcaatctcatcccaaaaa 193  Q
    |    |||||| | || |||||||||||||| |||||||||| |||| | ||| || ||||||| ||||||||||||    
T  30989359 ctaggtttcttgttgtgataaatatcttacttccatttttattatcaattacagcaaattcaatatcatcccaaaaa 30989435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 6 - 219
Target Start/End: Complemental strand, 21930944 - 21930731
Alignment:
Q  6 agtcaaattgaaatgccttcttattgaacaaatcaattgattgttcttcagttaaaggttgtagttcatgcacttcaataaacgaagatttcttacaata 105  Q
    |||||||||  |||||||||||||||||||| || |  |||||||| | |||||||||||| |  ||| ||| |||||| || |||||||| |||||| |    
T  21930944 agtcaaatttgaatgccttcttattgaacaactccaaagattgttcatgagttaaaggttgcaactcaagcatttcaatgaaagaagattttttacaaga 21930845  T
Q  106 catggcaacatccttatttcttctggtaataaatatcttactaccatttttatcatcactcacatcatattcaatctcatcccaaaaacttgtgttccat 205  Q
    ||   |||||||| | || ||| | || |||||||||||||| |||||||||  |||| |  || || ||||||| ||||||||||||  |   |||||     
T  21930844 caccacaacatccatgttccttgttgttataaatatcttacttccatttttactatcaattgcagcaaattcaatatcatcccaaaaatgtacattccaa 21930745  T
Q  206 acatcatcaaacac 219  Q
    ||||||||||||||    
T  21930744 acatcatcaaacac 21930731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 23 - 219
Target Start/End: Original strand, 22431133 - 22431329
Alignment:
Q  23 ttcttattgaacaaatcaattgattgttcttcagttaaaggttgtagttcatgcacttcaataaacgaagatttcttacaatacatgg-caacatcctta 121  Q
    |||||||||||||| || |  |||| |||||| ||||||  ||  |||||||||||||||| ||| |||||||||||||||  |||   || |||||||     
T  22431133 ttcttattgaacaattctaaagatttttcttcggttaaacctttaagttcatgcacttcaacaaaagaagatttcttacaag-catctacaccatccttg 22431231  T
Q  122 tttcttctggtaataaatatcttactaccatttttatcatcactcacatcatattcaatctcatcccaaaaacttgtgttccatacatcatcaaacac 219  Q
    |||||| | || || |||||||||| ||||||||| | |||| ||| | || ||||||| |||| ||||||| |||  | ||||||||||||||||||    
T  22431232 tttcttgttgtgattaatatcttacaaccatttttgttatcaatcatagcaaattcaatatcataccaaaaatttgactcccatacatcatcaaacac 22431329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 20 - 219
Target Start/End: Original strand, 22367884 - 22368083
Alignment:
Q  20 gccttcttattgaacaaatcaattgattgttcttcagttaaaggttgtagttcatgcacttcaataaacgaagatttcttacaatacat-ggcaacatcc 118  Q
    ||||||||||||||||| || |  |||| ||||||| |||||  ||  |||| ||||||||||| ||| |||||||||||||||  |||  |||||||||    
T  22367884 gccttcttattgaacaattctaaagatttttcttcacttaaaccttcaagtttatgcacttcaacaaaagaagatttcttacaa-gcatctgcaacatcc 22367982  T
Q  119 ttatttcttctggtaataaatatcttactaccatttttatcatcactcacatcatattcaatctcatcccaaaaacttgtgttccatacatcatcaaaca 218  Q
    |  |||||| | || || |||||||||| ||||||||| | |||| ||| |  | ||||||| |||| |||||||  || || |||||||||||||||||    
T  22367983 tcgtttcttgttgtgattaatatcttacaaccatttttgttatcaatcatagaaaattcaatatcattccaaaaatgtgagtcccatacatcatcaaaca 22368082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 22357956 - 22358042
Alignment:
Q  17 aatgccttcttattgaacaaatcaattgattgttcttcagttaaaggttgtagttcatgcacttcaataaacgaagatttcttacaa 103  Q
    |||||||||||||||||||| ||||  ||||||||| |||| |||  || |||||||| |||||||| ||| |||||||||||||||    
T  22357956 aatgccttcttattgaacaactcaaaagattgttctacagtcaaaccttttagttcatacacttcaacaaaagaagatttcttacaa 22358042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 157
Target Start/End: Complemental strand, 22187500 - 22187360
Alignment:
Q  17 aatgccttcttattgaacaaatcaattgattgttcttcagttaaaggttgtagttcatgcacttcaataaacgaagatttcttacaatacatggcaacat 116  Q
    |||||||||||||||||||| || |  |||||||||  || ||||||||| ||||||||||| |||||||| ||||| |  |||||| |||   ||||||    
T  22187500 aatgccttcttattgaacaactccaaagattgttctagagataaaggttgcagttcatgcacctcaataaaagaagactctttacaagacaccacaacat 22187401  T
Q  117 ccttatttcttctggtaataaatatcttactaccattttta 157  Q
     ||| || ||| | || ||||||||| |||| |||||||||    
T  22187400 tctttttccttgttgttataaatatcctacttccattttta 22187360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 100
Target Start/End: Original strand, 22436588 - 22436671
Alignment:
Q  17 aatgccttcttattgaacaaatcaattgattgttcttcagttaaaggttgtagttcatgcacttcaataaacgaagatttctta 100  Q
    |||||||||||||||||||| || |  |||| |||||||||||||  ||| |||||||| ||||||| ||| |||||| |||||    
T  22436588 aatgccttcttattgaacaattctaaagatttttcttcagttaaaccttgaagttcatgtacttcaacaaaagaagatctctta 22436671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 23 - 157
Target Start/End: Complemental strand, 22028506 - 22028372
Alignment:
Q  23 ttcttattgaacaaatcaattgattgttcttcagttaaaggttgtagttcatgcacttcaataaacgaagatttcttacaatacatggcaacatccttat 122  Q
    |||||||||||||| || |  |||||||||  || ||||||||| ||||||||||| |||||||| ||||| |  |||||| |||   |||||| ||| |    
T  22028506 ttcttattgaacaactccaaagattgttctagagataaaggttgcagttcatgcacctcaataaaagaagactctttacaagacaccacaacattctttt 22028407  T
Q  123 ttcttctggtaataaatatcttactaccattttta 157  Q
    | ||| | || ||||||||| |||| |||||||||    
T  22028406 tccttgttgttataaatatcctacttccattttta 22028372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 219
Target Start/End: Original strand, 22630485 - 22630594
Alignment:
Q  110 gcaacatccttatttcttctggtaataaatatcttactaccatttttatcatcactcacatcatattcaatctcatcccaaaaacttgtgttccatacat 209  Q
    ||||||||||| |||||| | || || |||||||||| ||||||||| | |||| ||| | || ||||||| |||| ||||||   ||  | ||||||||    
T  22630485 gcaacatccttgtttcttgttgtgattaatatcttacaaccatttttgttatcaatcatagcaaattcaatatcataccaaaattgtgcctcccatacat 22630584  T
Q  210 catcaaacac 219  Q
    ||||||||||    
T  22630585 catcaaacac 22630594  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 18966946 - 18966990
Alignment:
Q  22 cttcttattgaacaaatcaattgattgttcttcagttaaaggttg 66  Q
    ||||||||||||||| || || ||||||||||| |||||||||||    
T  18966946 cttcttattgaacaactctatagattgttcttcggttaaaggttg 18966990  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 216
Target Start/End: Original strand, 22458443 - 22458642
Alignment:
Q  17 aatgccttcttattgaacaaatcaattgattgttcttcagttaaaggttgtagttcatgcacttcaataaacgaagatttcttacaatacatg-gcaaca 115  Q
    |||| ||||||||||||||| || |  ||||||| |||||  |||  ||  | ||||| |||||||| ||| |||||||||||||| | |||  ||||||    
T  22458443 aatgtcttcttattgaacaactccaaagattgttgttcagccaaacctttcatttcatacacttcaacaaaagaagatttcttaca-tgcatttgcaaca 22458541  T
Q  116 tccttatttcttctggtaataaatatcttactaccatttttatcatcactcacatcatattcaatctcatcccaaaaacttgtgttccatacatcatcaa 215  Q
    ||| | |||||| | || || |||||||||| ||| ||||||| |||| ||| | || |||  || ||||||||||||  |  | |||||||||||||||    
T  22458542 tccatgtttcttgttgtgattaatatcttacaaccctttttattatcaatcatagcaaatttgatatcatcccaaaaatgtaagctccatacatcatcaa 22458641  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 216
Target Start/End: Original strand, 22481424 - 22481623
Alignment:
Q  17 aatgccttcttattgaacaaatcaattgattgttcttcagttaaaggttgtagttcatgcacttcaataaacgaagatttcttacaatacatg-gcaaca 115  Q
    |||| ||||||||||||||| || |  ||||||| |||||  |||  ||  | ||||| |||||||| ||| |||||||||||||| | |||  ||||||    
T  22481424 aatgtcttcttattgaacaactccaaagattgttgttcagccaaacctttcatttcatacacttcaacaaaagaagatttcttaca-tgcatttgcaaca 22481522  T
Q  116 tccttatttcttctggtaataaatatcttactaccatttttatcatcactcacatcatattcaatctcatcccaaaaacttgtgttccatacatcatcaa 215  Q
    ||| | |||||| | || || |||||||||| ||| ||||||| |||| ||| | || |||  || ||||||||||||  |  | |||||||||||||||    
T  22481523 tccatgtttcttgttgtgattaatatcttacaaccctttttattatcaatcatagcaaatttgatatcatcccaaaaatgtaagctccatacatcatcaa 22481622  T

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Target: scaffold1439 (Bit Score: 124; Significance: 6e-64; HSPs: 2)
Name: scaffold1439
Description:

Target: scaffold1439; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 1531 - 1686
Alignment:
Q  1 ttccaagtcaaattgaaatgccttcttattgaacaaatcaattgattgttcttcagttaaaggttgtagttcatgcacttcaataaacgaagatttctta 100  Q
    |||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  1531 ttccaagtcaaattgaaatgccttcttattaaacaaatcaaatgatttttcttcagttaaaggttgtagttcatgcacttcaataaaagaagatttctta 1630  T
Q  101 caatacatggcaacatccttatttcttctggtaataaatatcttactaccattttt 156  Q
    |||||||  ||||||||| |||||||| ||||||||||||||||||||||||||||    
T  1631 caatacacagcaacatccatatttcttgtggtaataaatatcttactaccattttt 1686  T

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Target: scaffold1439; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 140 - 224
Target Start/End: Original strand, 1714 - 1798
Alignment:
Q  140 atcttactaccatttttatcatcactcacatcatattcaatctcatcccaaaaacttgtgttccatacatcatcaaacacaaaaa 224  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1714 atcttactaccatttttattatcactcacaacatattcaatctcatcccaaaaacttgtgttccatacatcatcaaacacaaaaa 1798  T

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Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 5 - 184
Target Start/End: Complemental strand, 40580512 - 40580333
Alignment:
Q  5 aagtcaaattgaaatgccttcttattgaacaaatcaattgattgttcttcagttaaaggttgtagttcatgcacttcaataaacgaagatttcttacaat 104  Q
    ||||||||||||||||||||||| ||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  40580512 aagtcaaattgaaatgccttcttgttgaacaaatcaaatgatttttcttctgttaaaggttgtagttcatgcacttcaataaaagaaaatttcttacaat 40580413  T
Q  105 acatggcaacatccttatttcttctggtaataaatatcttactaccatttttatcatcactcacatcatattcaatctca 184  Q
    |||  ||||||||| || |||||  ||||||||||||||||||||||||||||| |||||||| | ||||||||||||||    
T  40580412 acactgcaacatccatacttcttgaggtaataaatatcttactaccatttttattatcactcatagcatattcaatctca 40580333  T

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Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 130 - 213
Target Start/End: Complemental strand, 40580327 - 40580244
Alignment:
Q  130 ggtaataaatatcttactaccatttttatcatcactcacatcatattcaatctcatcccaaaaacttgtgttccatacatcatc 213  Q
    ||||||||||||||||||||||||||||| |||||||| | |||||||||| ||| ||||||||||| ||||||||||||||||    
T  40580327 ggtaataaatatcttactaccatttttattatcactcatagcatattcaatatcaccccaaaaacttttgttccatacatcatc 40580244  T

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