View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18588_low_6 (Length: 489)
Name: NF18588_low_6
Description: NF18588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18588_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 18 - 479
Target Start/End: Complemental strand, 37420517 - 37420056
Alignment:
| Q |
18 |
ccaagaggatgcaaatatccagtgctggtcaagatatcataagcaacctacctgtctttatcattgcccacattctttcttttcttcgtattgaagatgc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37420517 |
ccaagaggatgcaaatatccagtgctggtcaagatatcataagcaacctacctgtctttatcattgcccacattctttcttttcttcgtattgaagatgc |
37420418 |
T |
|
| Q |
118 |
agtccgcacaagtgttttatcacggaggtggatatacatgtggacgtttgtcacaaaactatattttggagataaaccaatctataagttaaagaaaact |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37420417 |
agtccgcacaagtgttttatcacggaggtggatatacatgtggacgtttgtcacaaaactatattttggagataaaccaatctataagttaaagaaaact |
37420318 |
T |
|
| Q |
218 |
agatttatgaactttgtatgcagggtgttgtttcatctgaatagtgcaagcatcgattcattttctttttatctttcagagcagtatgatccctacatta |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37420317 |
agatttatgaactttgtatgcagggtgttgtttcatcttaatagtgcaagcatcgattcattttctttttatctttcagagcagtatgatccctacatta |
37420218 |
T |
|
| Q |
318 |
tcagtcagtggatatctgttgtttcaaatagaaaagtaaaaaagattcatttacgttcgcttgaagaatgcaacatttcagtttatcccattttcaaatg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37420217 |
tcagtcagtggatatctgttgtttcaaatagaaaagtaaaaaagattcatttacgttcgcttgaagaatgcaacatttcagtttatcccattttcaaatg |
37420118 |
T |
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| Q |
418 |
ccagaccttggaggaattggtgctggcgttgggtcattctattgtccaatttccatcctttg |
479 |
Q |
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| T |
37420117 |
ccagaccttggaggaattggtgctggcgttgggtcattctactgtccgatttccatcctttg |
37420056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 8e-22; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 34 - 179
Target Start/End: Complemental strand, 51939813 - 51939668
Alignment:
| Q |
34 |
atccagtgctggtcaagatatcataagcaacctacctgtctttatcattgcccacattctttcttttcttcgtattgaagatgcagtccgcacaagtgtt |
133 |
Q |
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|||||||| |||||||| ||||||||| |||| ||| || ||| ||||| |||||||| |||||||||| || | | ||||||| || || |||| | |
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| T |
51939813 |
atccagtgagggtcaagacatcataagccgcctatctgactgtattattgctcacattctctcttttcttcctactaactatgcagttcgtactagtgct |
51939714 |
T |
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| Q |
134 |
ttatcacggaggtggatatacatgtggacgtttgtcacaaaactat |
179 |
Q |
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| T |
51939713 |
ttatcacagaggtggaggtacatgtggacgtttgtcacaaaactat |
51939668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 34 - 172
Target Start/End: Complemental strand, 51944811 - 51944673
Alignment:
| Q |
34 |
atccagtgctggtcaagatatcataagcaacctacctgtctttatcattgcccacattctttcttttcttcgtattgaagatgcagtccgcacaagtgtt |
133 |
Q |
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|||||||| ||||||||||| |||||| ||||||||| |||| | || | | ||||||||||||||||| || | || ||||||| || || ||| | |
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| T |
51944811 |
atccagtgagggtcaagatatgataagcgacctacctgactttgttatcggtcgcattctttcttttcttcctactaaatatgcagttcgtaccggtgct |
51944712 |
T |
|
| Q |
134 |
ttatcacggaggtggatatacatgtggacgtttgtcaca |
172 |
Q |
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||||||| |||||||||||||| |||| |||| ||||| |
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| T |
51944711 |
ttatcacagaggtggatatacaaatggatgtttctcaca |
51944673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 441
Target Start/End: Complemental strand, 51939429 - 51939388
Alignment:
| Q |
400 |
ttatcccattttcaaatgccagaccttggaggaattggtgct |
441 |
Q |
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||||||| |||||||||| ||| ||||||||||||||||||| |
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| T |
51939429 |
ttatccccttttcaaatgtcagtccttggaggaattggtgct |
51939388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 185
Target Start/End: Complemental strand, 34747525 - 34747430
Alignment:
| Q |
90 |
ttctttcttttcttcgtattgaagatgcagtccgcacaagtgttttatcacggaggtggatatacatgtggacgtttgtcacaaaactatattttg |
185 |
Q |
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||||||||||||||| || | | |||||||| || |||||||||||| ||||||||||||| | ||||| ||| ||||||||||| |||||| |
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| T |
34747525 |
ttctttcttttcttcctactaaggatgcagtttctaccagtgttttatcaaagaggtggatatacctatggacatttatcacaaaactagattttg |
34747430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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