View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18588_low_62 (Length: 216)
Name: NF18588_low_62
Description: NF18588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18588_low_62 |
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Alignment Details
Target: chr1 (Bit Score: 97; Significance: 8e-48; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 58 - 199
Target Start/End: Complemental strand, 8774270 - 8774130
Alignment:
| Q |
58 |
ctcgtgattttccagggattaaaaacatatttaaccctgtaagctcaaataagtcaatagacccaaatcagggcgtgcatgcattccccttatgtnnnnn |
157 |
Q |
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| T |
8774270 |
ctcgtgattttccggggattaaaaacatatttaaccctataagctcaaataagtcaataaacccaaatcagggtgtgcatgcattccccttatgt-aaaa |
8774172 |
T |
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| Q |
158 |
nnntattaagcaagctatgcaagagagtttgtaagctcaaat |
199 |
Q |
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| T |
8774171 |
aaatattaagcaagctatgcaagagagtttgtaagctcaaat |
8774130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 96
Target Start/End: Complemental strand, 11615312 - 11615280
Alignment:
| Q |
64 |
attttccagggattaaaaacatatttaaccctg |
96 |
Q |
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| T |
11615312 |
attttacagggattaaaaacatatttaaccctg |
11615280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 95
Target Start/End: Original strand, 31050115 - 31050149
Alignment:
| Q |
61 |
gtgattttccagggattaaaaacatatttaaccct |
95 |
Q |
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| T |
31050115 |
gtgattttgcagggattaaaaacatatttaaccct |
31050149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 141
Target Start/End: Original strand, 2543228 - 2543272
Alignment:
| Q |
97 |
taagctcaaataagtcaatagacccaaatcagggcgtgcatgcat |
141 |
Q |
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| T |
2543228 |
taaggtcaaataagtcaagagacccagatcagggggtgcatgcat |
2543272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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