View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18588_low_9 (Length: 473)
Name: NF18588_low_9
Description: NF18588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18588_low_9 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 21 - 473
Target Start/End: Original strand, 25175394 - 25175846
Alignment:
| Q |
21 |
ggtcaaacaaatcaacatcacatactttcattatcatcgacatatcgtaagcttttagtcagcatcccactatagtaactagtaacatgggaaaaaggtg |
120 |
Q |
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| T |
25175394 |
ggtcaaacaaatcaacatcacatactttcattatcatcgacatatcgtaagcttttagtcagcatcccactatagtaactagtaacatgggaaaaaggtg |
25175493 |
T |
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| Q |
121 |
tacatatatgcttaccctatcactcaccattattgaannnnnnnccctgaatagaccaagccaataactcagaagataaaacatgaaataaacatgtgat |
220 |
Q |
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| T |
25175494 |
tacatatatgcttaccctatcactcaccattattgaatttttttccctgaatagaccaagccaataactcagaagataaaacatgaaataaacatgtgat |
25175593 |
T |
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| Q |
221 |
tcaattctttctttttatttttcatcaattgaaccccaaactaaagacatgataataagttaaacctacccaacccaagagcaacatatccaattattta |
320 |
Q |
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| T |
25175594 |
tcaattctttctttttatttttcatcaattgaaccccaaactaaagacatgataataagttaaacctacccaacccaagagcaacatatccaattattta |
25175693 |
T |
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| Q |
321 |
attatatgctaatcatgtcatttgcaaattacatgattaattattattggaactaattacacttgtgaagccaatgattcaacttgagtctttccacaag |
420 |
Q |
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| T |
25175694 |
attatatgctaatcatgtcatttgcaaattacatgattaattattattggaactaattacacttgtgaagccaatgattcaacttgagtctttccacaag |
25175793 |
T |
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| Q |
421 |
gtcctttcatcctaataaaaagtctgtattcatcataggtcattgctgagtac |
473 |
Q |
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| T |
25175794 |
gtcctttcatcctaataaaaagtctgtattcatcataggtcattgctgagtac |
25175846 |
T |
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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 396 - 468
Target Start/End: Original strand, 31789747 - 31789819
Alignment:
| Q |
396 |
gattcaacttgagtctttccacaaggtcctttcatcctaataaaaagtctgtattcatcataggtcattgctg |
468 |
Q |
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| T |
31789747 |
gattcaacttgagatttgccacaaggtcccctcattctaatgaagagtctgtactcatcaaaggtcattgctg |
31789819 |
T |
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