View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18589_high_10 (Length: 496)
Name: NF18589_high_10
Description: NF18589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18589_high_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 428; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 27 - 478
Target Start/End: Original strand, 33777163 - 33777614
Alignment:
| Q |
27 |
catggctagtgttatgagaccaagatccagttttaatcaaggtcatgaagtgacaatcaatattgtgagtgttgttaatgtttataacatcatgggtgta |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33777163 |
catggctagtgttatgagaccaagatccagttttaatcaaggtcatgaagtgacaatcaatattgtgagtgttgttaatgtttataacatcatgggtgta |
33777262 |
T |
|
| Q |
127 |
gaaaccaatccttttcatggccttatggccttcattttctttgtactcattggtttccttcaaattagttatccagataatcccactgcatttcatgtcc |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33777263 |
gaaaccaatccttttcatggccttatggccttcattttctttgtactcattggtttccttcaaattagttatccagataatcccactgcatttcatgtcc |
33777362 |
T |
|
| Q |
227 |
atccaaagacaatgtttgtctctattgctagctttctactatattgtttggtcttttggattaagattaagtttaccacaacaagaattgatacactcat |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33777363 |
atccaaagacaatgtttgtctctattgctagctttctactatattgtttggtcttttggattaagattaagtttaccacaacaagaattgatacactcat |
33777462 |
T |
|
| Q |
327 |
ggaagtgtttggttcactttcaatagtttatttggtgttgatgttcctcccaaacaattggggagtatgttcatacattatcatatacacaacatggttc |
426 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
33777463 |
agaagtgtttggttcactttcaatagtttctttggtgttaatgttccttccaaacaattggggagtatgttcatacattatcatatacacagcatggttc |
33777562 |
T |
|
| Q |
427 |
atttgttatgtgctacttctcatgaacagacactgttttgttgggggacgtc |
478 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
33777563 |
atttgttatgtgctacttctcatgaacagacactgttttgttggggtacgtc |
33777614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 89 - 435
Target Start/End: Original strand, 33774587 - 33774936
Alignment:
| Q |
89 |
ttgtgagtgttgttaatgtttataacatcatgggtgtagaaaccaatccttttcatggccttatggccttcattttctttgtactcattggtttccttca |
188 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
33774587 |
ttgttagtgtagttaatgtttataacatcatgggagtagaaaccaatcattttcatggccttatggccttcattttct--ggactcattggtttccttca |
33774684 |
T |
|
| Q |
189 |
aattagttatccagataatcccactgcatttcatgtccatccaaagacaatgtttgtctctattgctagc-tttctactatattgtttggtcttttggat |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||| ||||| |
|
|
| T |
33774685 |
aattagttatccagataatcccactgcatttcatgtccatccaaagacaatgtttgtcactattgctagcttttctactatattgcttggtcttctggat |
33774784 |
T |
|
| Q |
288 |
taagattaagtttaccacaacaagaattgatacactcatggaagtgtttggttcactttcaatagtttatttggtgtt----gatgttcctcccaaacaa |
383 |
Q |
| |
|
||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
33774785 |
taatattaagtttaccacgacaagaattgatacactcatggaagtgtttggctcactttcaatagtttctttggtgttgatcgatgttcctcccaaacaa |
33774884 |
T |
|
| Q |
384 |
ttggggagtatgttcatacattatcatatacacaacatggttcatttgttat |
435 |
Q |
| |
|
|||| | ||| |||||||||||||||||| | |||||||||||||||| |
|
|
| T |
33774885 |
ttggacattatcaggatacattatcatatacacgatatggttcatttgttat |
33774936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 46 - 437
Target Start/End: Complemental strand, 10657853 - 10657465
Alignment:
| Q |
46 |
ccaagatccagttttaatcaaggtcatgaagtgacaatcaatattgtgagtgttgttaatgtttataacatcatgggtgtagaaaccaatccttttcatg |
145 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||| || ||| ||| ||||||||||||||||||||||||||||| ||||||||||||||| | |||| |
|
|
| T |
10657853 |
ccaagatccacttttaatcaaggtcatgaggtgaccataaatgttgccagtgttgttaatgtttataacatcatgggagtagaaaccaatcctctccatg |
10657754 |
T |
|
| Q |
146 |
gccttatggccttcattttctttgtactcattggtttccttcaaattagttatccagataatcccactgcatttcatgtccatccaaagacaatgtttgt |
245 |
Q |
| |
|
|||||||| ||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||| | | |
|
|
| T |
10657753 |
gccttatgaccttccttttctttgtcctcattggtttccttcaaattagttatccaaataatcccactgcatttcaagcccatccaaagacaatgctact |
10657654 |
T |
|
| Q |
246 |
ctctattgctagctttctactatattgtttggtcttttggattaagattaagtttaccacaacaagaattgatacactcatggaagtgtttggttcactt |
345 |
Q |
| |
|
|||| | |||||||||||||||||||| || | ||||||||||||| |||||||| | | |||| ||||||| |||||||||| ||||||||||||| |
|
|
| T |
10657653 |
ctctgtagctagctttctactatattgctttgccttttggattaagcttaagttt---gctataagacttgataccctcatggaagcgtttggttcactt |
10657557 |
T |
|
| Q |
346 |
tcaatagtttatttggtgttgatgttcctcccaaacaattggggagtatgttcatacattatcatatacacaacatggttcatttgttatgt |
437 |
Q |
| |
|
|||||| ||| |||||||||||||||| |||||||||| |||||| ||| | |||||||| ||| |||||| ||||||||||||| |||| |
|
|
| T |
10657556 |
tcaataatttctttggtgttgatgttcatcccaaacaaatggggattatttggatacattaccatttacacattatggttcatttgtcatgt |
10657465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 63 - 437
Target Start/End: Complemental strand, 10707755 - 10707384
Alignment:
| Q |
63 |
tcaaggtcatgaagtgacaatcaatattgtgagtgttgttaatgtttataacatcatgggtgtagaaaccaatccttttcatggccttatggccttcatt |
162 |
Q |
| |
|
|||| ||||||||||||| || ||| |||| ||||||||||||||||| ||||||||||| ||||||||||| ||| | ||| ||||||||||||||||| |
|
|
| T |
10707755 |
tcaaagtcatgaagtgaccataaatgttgtaagtgttgttaatgtttacaacatcatgggagtagaaaccaaccctctacatagccttatggccttcatt |
10707656 |
T |
|
| Q |
163 |
ttctttgtactcattggtttccttcaaattagttatccagataatcccactgcatttcatgtccatccaaagacaatgtttgtctctattgctagctttc |
262 |
Q |
| |
|
|||||||||||| ||| |||||| ||||||| ||||||||||||||||||||||||||| |||||||||| |||||| | ||||| |||||||||||| |
|
|
| T |
10707655 |
ttctttgtactccttgctttcctccaaattacttatccagataatcccactgcatttcaaatccatccaaaaacaatgataatctctgttgctagctttc |
10707556 |
T |
|
| Q |
263 |
tactatattgtttggtcttttggattaagattaagtttaccacaacaagaattgatacactcatggaagtgtttggttcactttcaatagtttatttggt |
362 |
Q |
| |
|
||||||||||||| | ||||||||||||| ||| |||| ||||||| ||||||| |||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
10707555 |
tactatattgttttgccttttggattaagcttatgttt---gcaacaagggttgataccctcatggaagtgtttggttccctttcaatagtttctttggt |
10707459 |
T |
|
| Q |
363 |
gttgatgttcctcccaaacaattggggagtatgttcatacattatcatatacacaacatggttcatttgttatgt |
437 |
Q |
| |
|
|||||||||| | ||| | ||||||| | | | |||| |||||||||| |||| ||||||||||||| |||| |
|
|
| T |
10707458 |
gttgatgttctttccagaaaattgggaaacacttggatactttatcatatatacaatatggttcatttgtcatgt |
10707384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 126 - 430
Target Start/End: Complemental strand, 10693896 - 10693595
Alignment:
| Q |
126 |
agaaaccaatccttttcatggccttatggccttcattttctttgtactcattggtttccttcaaattagttatccagataatcccactgcatttcatgtc |
225 |
Q |
| |
|
||||||||||||| ||||| | ||||||||||||| ||||||||||||| |||||||||| ||||| |||||||||||||| |||| ||||||||| || |
|
|
| T |
10693896 |
agaaaccaatcctcttcattgtcttatggccttcactttctttgtactccttggtttcctccaaatcagttatccagataaacccagtgcatttcaaatc |
10693797 |
T |
|
| Q |
226 |
catccaaagacaatgtttgtctctattgctagctttctactatattgtttggtcttttggattaagattaagtttaccacaacaagaattgatacactca |
325 |
Q |
| |
|
||||||||||||||| | ||||| |||||||||||||| |||||| || | ||||||||||||| | |||||| |||| || ||||||| ||| |
|
|
| T |
10693796 |
catccaaagacaatgatactctctgttgctagctttctaatatattcctttgccttttggattaagctcaagttt---gcaactagggttgataccttca |
10693700 |
T |
|
| Q |
326 |
tggaagtgtttggttcactttcaatagtttatttggtgttgatgttcctcccaaacaattggggagtatgttcatacattatcatatacacaacatggtt |
425 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||||| |||||||| ||||| ||||||||||| ||||| |||||||||||||||||||| |||||| |
|
|
| T |
10693699 |
tggaagtgtttggttccctttcaatagtttctttggtgatgatgttcttcccacacaattggggaatatgtggatacattatcatatacacaatatggtt |
10693600 |
T |
|
| Q |
426 |
cattt |
430 |
Q |
| |
|
||||| |
|
|
| T |
10693599 |
cattt |
10693595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 48 - 429
Target Start/End: Complemental strand, 10634273 - 10633883
Alignment:
| Q |
48 |
aagatccagttttaatcaaggtcatgaagtgacaatcaatattgtgagtgttgttaatgtttataacatcatgggtgtagaaaccaatccttttcatggc |
147 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||||||||| | | |||||||||||| || ||| || ||| ||||||| |||||||||||||| | |
|
|
| T |
10634273 |
aagatcaagttttaatcaaggttctgaagtgacaatcaatatag---gagttgttaatgttcatgacaccaagggagtagaaaacaatccttttcatgtc |
10634177 |
T |
|
| Q |
148 |
cttatggccttcattttctttgtactcattggtttccttcaaattagttatccagataatcccactgcatttcatgtccatccaaagacaatgtttgtct |
247 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| |||||| | |||||||| ||||| || | ||| | ||||||||||||||||||||||||| |
|
|
| T |
10634176 |
cttatggccttcattttttttgtactcattggtttcctccaaattcgatatccagaaaatccaacctcgtttgaagtccatccaaagacaatgtttgtct |
10634077 |
T |
|
| Q |
248 |
ctattgctagctttctactatattgtttggtcttttggattaagattaagtttaccacaa--------caag----aattgatacactcatggaagtgtt |
335 |
Q |
| |
|
|||| ||||| ||| |||||||||| |||| |||||||||||||||||||||| | || | ||| ||||||||||||| | || |||| |
|
|
| T |
10634076 |
ctatggctagttttttactatattgcttggccttttggattaagattaagtttgctactagggtttttgaagggaaaattgatacactccttcaaatgtt |
10633977 |
T |
|
| Q |
336 |
tggttcactttcaatagtttatttggtgttgatgttcctcccaaacaattggggagtatgttcatacattatcatatacacaacatggttcatt |
429 |
Q |
| |
|
|||||| || |||||| ||| ||||||| |||||||| | || || | |||||||||| | ||||||| ||||||||||||||||||||||| |
|
|
| T |
10633976 |
tggttcgctctcaataatttctttggtgatgatgttctttcctaaaagttggggagtagttggatacattgtcatatacacaacatggttcatt |
10633883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 110 - 430
Target Start/End: Complemental strand, 10698499 - 10698182
Alignment:
| Q |
110 |
ataacatcatgggtgtagaaaccaatccttttcatggccttatggccttcattttctttgtactcattggtttccttcaaattagttatccagataatcc |
209 |
Q |
| |
|
||||||||||||| | ||||| |||||| ||||||||| | ||||| ||||||||||||||| |||||||||| |||||||| || ||||| ||||| |
|
|
| T |
10698499 |
ataacatcatgggaatggaaactaatcctcaacatggccttgtagcctttattttctttgtactccttggtttcctccaaattagatacccagaaaatcc |
10698400 |
T |
|
| Q |
210 |
cactgcatttcatgtccatccaaagacaatgtttgtctctattgctagctttctactatattgtttggtcttttggattaagattaagtttaccacaaca |
309 |
Q |
| |
|
|| ||||||| |||||||||||| || ||| || ||||||||||| ||||| ||||||||||||| ||||||||||||| |||||||| |||||| |
|
|
| T |
10698399 |
taccccatttcaaatccatccaaagataacgttagtgtctattgctagttttctcctatattgtttggccttttggattaagcttaagttt---acaaca |
10698303 |
T |
|
| Q |
310 |
agaattgatacactcatggaagtgtttggttcactttcaatagtttatttggtgttgatgttcctcccaaacaattggggagtatgttcatacattatca |
409 |
Q |
| |
|
|| ||||||| |||||||||||||||||||| ||||||||| ||| |||||||||||||||| | ||| | ||||| ||| ||| | |||||||| | |
|
|
| T |
10698302 |
agggttgataccctcatggaagtgtttggttccctttcaataatttctttggtgttgatgttctttccagaaaattgtggactatttggatacattacaa |
10698203 |
T |
|
| Q |
410 |
tatacacaacatggttcattt |
430 |
Q |
| |
|
|||||||| ||||||||||| |
|
|
| T |
10698202 |
tatacacattatggttcattt |
10698182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 112 - 430
Target Start/End: Complemental strand, 10690564 - 10690249
Alignment:
| Q |
112 |
aacatcatgggtgtagaaaccaatccttttcatggccttatggccttcattttctttgtactcattggtttccttcaaattagttatccagataatccca |
211 |
Q |
| |
|
||||||||||| |||||||| |||||| ||||||||| | ||||||||||||||||||||| |||||||||| ||| |||| |||||||| ||||| | |
|
|
| T |
10690564 |
aacatcatgggagtagaaactaatcctcaacatggccttgtagccttcattttctttgtactccttggtttcctccaagttagatatccagaaaatccta |
10690465 |
T |
|
| Q |
212 |
ctgcatttcatgtccatccaaagacaatgtttgtctctattgctagctttctactatattgtttggtcttttggattaagattaagtttaccacaacaag |
311 |
Q |
| |
|
| | ||||| |||||||||||||||| ||| || |||||||||||||||||||||||||| |||| ||| ||||||| |||||||| | ||||| |
|
|
| T |
10690464 |
ccccttttcaagtccatccaaagacaacgttggtatctattgctagctttctactatattgcttggccttcatgattaagcttaagttt---gctacaag |
10690368 |
T |
|
| Q |
312 |
aattgatacactcatggaagtgtttggttcactttcaatagtttatttggtgttgatgttcctcccaaacaattggggagtatgttcatacattatcata |
411 |
Q |
| |
|
||||||| | ||||||||||||||||||||||| || ||| |||||||||||||| |||||| | ||||||||| ||| | ||| ||||||||| |
|
|
| T |
10690367 |
ggttgataccttgttggaagtgtttggttcactttcattaatttcattggtgttgatgttgctcccagaaaattggggattatttggatatattatcata |
10690268 |
T |
|
| Q |
412 |
tacacaacatggttcattt |
430 |
Q |
| |
|
||||||| ||||||||||| |
|
|
| T |
10690267 |
tacacaatatggttcattt |
10690249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 47 - 140
Target Start/End: Complemental strand, 10694002 - 10693909
Alignment:
| Q |
47 |
caagatccagttttaatcaaggtcatgaagtgacaatcaatattgtgagtgttgttaatgtttataacatcatggg---tgtagaaaccaatccttt |
140 |
Q |
| |
|
||||||||| |||||||| | ||||||||||||| || ||| ||||||| |||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
10694002 |
caagatccaattttaatcgaagtcatgaagtgaccataaatgttgtgag---tgttaatgtttataacatcatgggagtagtagaaaccaatccttt |
10693909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 112 - 435
Target Start/End: Original strand, 15240269 - 15240592
Alignment:
| Q |
112 |
aacatcatgggtgtagaaaccaatccttttcatggccttatggccttcattttctttgtactcattggtttccttcaaattagttatccagataatccca |
211 |
Q |
| |
|
||||||||||| ||| ||||||| || ||||||| ||| ||||||||||||| | ||| || || ||||| || ||||| |||||||||||||||||| |
|
|
| T |
15240269 |
aacatcatgggaatagcaaccaattctcttcatggtcttgtggccttcattttttatgtgcttataggttttctccaaatctgttatccagataatccca |
15240368 |
T |
|
| Q |
212 |
ctgcatttcatgtccatccaaagacaatgtttgtctctattgctagctttctactatattgtttggtcttttggattaagattaagtttaccacaacaag |
311 |
Q |
| |
|
| | ||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||| | |||||| |||| |||| ||| |||||||| |
|
|
| T |
15240369 |
cagtctttcaactccatccaaagacaatgttagtctctattgctagctttctactatattctttagcattttgggttaaacttaaatttgatacaacaag |
15240468 |
T |
|
| Q |
312 |
aattgatacactcatggaagtgtttggttcactttcaatagtttatttggtgttgatgttcctcccaaacaattggggagtatgttcatacattatcata |
411 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||||| ||| |||||| ||||||||| ||||| ||||||||||| ||| | ||||||||||||| |
|
|
| T |
15240469 |
gattgataccctcatggaagtgtttggttccctttcaataatttctttggttttgatgttcttcccacacaattggggattatttggatacattatcata |
15240568 |
T |
|
| Q |
412 |
tacacaacatggttcatttgttat |
435 |
Q |
| |
|
|||||| ||||||||||| |||| |
|
|
| T |
15240569 |
tacacattatggttcatttattat |
15240592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 126 - 418
Target Start/End: Original strand, 15246621 - 15246906
Alignment:
| Q |
126 |
agaaaccaatccttttcatggccttatggccttcattttctttgtactcattggtttccttcaaattagttatccagataatcccactgcatttcatgtc |
225 |
Q |
| |
|
||||||||||||| ||||||||| | ||||||| |||| | |||||||| ||||||| | |||||| ||||||||||||||||| | ||||| | |
|
|
| T |
15246621 |
agaaaccaatcctcttcatggccctgtggccttatttttttgtgtactcagaggtttcc--cgaattagctatccagataatcccacaacctttcaa--c |
15246716 |
T |
|
| Q |
226 |
catccaaagacaatgtttgtctctattgctagctttctactatattgtttggtcttttggattaagattaagtttaccacaacaagaattgatacactca |
325 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||| || |||| |||| ||| ||| || | ||||||| || | |
|
|
| T |
15246717 |
aatccaaagacaatgttagtctctattgctagctttctactatattgtttggcttttagggttaaacttaaatttgccagaa---ggcttgataccctta |
15246813 |
T |
|
| Q |
326 |
tggaagtgtttggttcactttcaatagtttatttggtgttgatgttcctcccaaacaattggggagtatgttcatacattatcatatacacaa |
418 |
Q |
| |
|
||||||||||||||| ||||||||| ||| |||||||||||||||| ||||||| ||||||||| ||| | |||||||||||||| ||||| |
|
|
| T |
15246814 |
aggaagtgtttggttcgctttcaataatttctttggtgttgatgttcttcccaaagaattggggattatctggatacattatcatatgcacaa |
15246906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University