View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18589_high_13 (Length: 458)
Name: NF18589_high_13
Description: NF18589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18589_high_13 |
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Alignment Details
Target: chr6 (Bit Score: 173; Significance: 7e-93; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 168 - 441
Target Start/End: Complemental strand, 30935549 - 30935283
Alignment:
| Q |
168 |
caagtaaacatacatagaaatattgaaattctaatcagccnnnnnnncct-caactctgcatcacagaggatgtgcaatgaccctgtaaggttgaggact |
266 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||| | | |||| || |
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| T |
30935549 |
caagtaaacatacatagaaatattgaaattctaatcagcctttttttccttcaactctgcatcacagaggacttgcaatgaccctatgaagttgcgg--- |
30935453 |
T |
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| Q |
267 |
tgaggcaatggggtgggatctctgtatgtgttgctgcttcactagcacttctgacatatttccaaagcagaataaattgaattggcaaatcttcccctat |
366 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
30935452 |
-----caatggggtgggatctctgtatgtgctgctgcttcactagcacttctgacatatttccaaagcagaataaattgaagtggcaaatcttcccctat |
30935358 |
T |
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| Q |
367 |
gagcaacttagaaaagccacaaattattttgatgaagctcacattcttgaaaagaaaagctctgccactatatat |
441 |
Q |
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|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
30935357 |
gagctacttaggaaagccacaaattattttgatgaagctcacattcttgaaaagaaaggctctgccactatatat |
30935283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 273 - 441
Target Start/End: Complemental strand, 30994360 - 30994192
Alignment:
| Q |
273 |
aatggggtgggatctctgtatgtgttgctgcttcactagcacttctgacatatttccaaagcagaataaattgaattggcaaatcttcccctatgagcaa |
372 |
Q |
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|||| |||||||| |||||||||||||||||||||||||||| ||||| | |||||||||||||| |||||||||||||||||||||||| ||||||||| |
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| T |
30994360 |
aatgaggtgggatatctgtatgtgttgctgcttcactagcacatctgaaacatttccaaagcagagtaaattgaattggcaaatcttcccatatgagcaa |
30994261 |
T |
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| Q |
373 |
cttagaaaagccacaaattattttgatgaagctcacattcttgaaaagaaaagctctgccactatatat |
441 |
Q |
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| T |
30994260 |
cttagaaaagccacaaattattttgatgaagctcacattcttgataagaaaggctcgcccactgtatat |
30994192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 15 - 117
Target Start/End: Complemental strand, 30966450 - 30966348
Alignment:
| Q |
15 |
tatacacataaatacagaaagatattctaatagtacttcaatgtatcaaaattgcaaacacatccaaatttagtcgttttggttcttgaatatgttttta |
114 |
Q |
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||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||| |
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| T |
30966450 |
tatacacattaatacagaaagatgttctaatagtaattcaatgtatcaaaattgcaaacacatccaactttagtcggttttgttcttgaatatgttttta |
30966351 |
T |
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| Q |
115 |
gct |
117 |
Q |
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||| |
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| T |
30966350 |
gct |
30966348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 7 - 107
Target Start/End: Complemental strand, 30957324 - 30957225
Alignment:
| Q |
7 |
tcgaagaatatacacataaatacagaaagatattctaatagtacttcaatgtatcaaaattgcaaacacatccaaatttagtcgttttggttcttgaata |
106 |
Q |
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||||| ||||||||||| |||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
30957324 |
tcgaataatatacacattaatacaaaaagttattctaatagtacttcaa-gtatcaaaattgcaaacacatccaagtttagtcggtttggttcttgaata |
30957226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 25 - 127
Target Start/End: Complemental strand, 30936148 - 30936046
Alignment:
| Q |
25 |
aatacagaaagatattctaatagtacttcaatgtatcaaaattgcaaacacatccaaatttagtcgttttggttcttgaatatgtttttagcttgtcaaa |
124 |
Q |
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|||||| ||| |||||||||| |||||| |||||||||| ||||||||||||||||||||||||| |||||||||| ||||||| ||||||| ||||| |
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| T |
30936148 |
aatacacaaaaatattctaatcgtacttgaatgtatcaacattgcaaacacatccaaatttagtcagtttggttcttaaatatgtatttagctactcaaa |
30936049 |
T |
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| Q |
125 |
tta |
127 |
Q |
| |
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||| |
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|
| T |
30936048 |
tta |
30936046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 166 - 334
Target Start/End: Complemental strand, 30965662 - 30965503
Alignment:
| Q |
166 |
cacaagtaaacatacatagaaatattgaaattctaatcagccnnnnnnncctcaactctgcatcacagaggatgtgcaatgaccctgtaaggttgaggac |
265 |
Q |
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|||||||||||||||||||||| |||| |||||||||||||| |||||||||| || ||||||| ||||||||||||| | |||||| ||| |
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| T |
30965662 |
cacaagtaaacatacatagaaaaattggaattctaatcagcctttttttg-tcaactctgcttcgcagaggacgtgcaatgaccctatgaggttgggga- |
30965565 |
T |
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| Q |
266 |
ttgaggcaatggggtgggatctctgtatgtgttgctgcttcactagcacttctgacatatttccaaagc |
334 |
Q |
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|||| |||| ||||||| |||||| ||||||||||||||||||||||| | ||||||||||| |
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| T |
30965564 |
-------aatgaggtgagatctctctatgtgctgctgcttcactagcacttctgaaacatttccaaagc |
30965503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 379 - 441
Target Start/End: Complemental strand, 30965507 - 30965445
Alignment:
| Q |
379 |
aaagccacaaattattttgatgaagctcacattcttgaaaagaaaagctctgccactatatat |
441 |
Q |
| |
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||||||||| ||||||||||| ||||||||||||||||||||| | |||| |||||| ||||| |
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| T |
30965507 |
aaagccacatattattttgatcaagctcacattcttgaaaagagaggctcggccactgtatat |
30965445 |
T |
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