View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18589_high_18 (Length: 373)

Name: NF18589_high_18
Description: NF18589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18589_high_18
NF18589_high_18
[»] chr1 (11 HSPs)
chr1 (8-356)||(31047666-31048014)
chr1 (71-141)||(32261032-32261103)
chr1 (73-136)||(49959041-49959105)
chr1 (187-229)||(13125793-13125835)
chr1 (70-138)||(27916497-27916566)
chr1 (190-248)||(20566987-20567044)
chr1 (189-254)||(26332893-26332958)
chr1 (70-125)||(14352970-14353026)
chr1 (197-257)||(37990547-37990607)
chr1 (70-136)||(26332771-26332837)
chr1 (37-77)||(18839684-18839724)
[»] chr8 (8 HSPs)
chr8 (187-269)||(33839263-33839345)
chr8 (70-137)||(31573934-31574002)
chr8 (194-257)||(31574083-31574146)
chr8 (187-256)||(33021225-33021293)
chr8 (192-257)||(17847459-17847524)
chr8 (73-136)||(13986035-13986099)
chr8 (39-77)||(4812631-4812669)
chr8 (39-77)||(28332631-28332669)
[»] chr7 (7 HSPs)
chr7 (187-259)||(8260369-8260441)
chr7 (70-137)||(11081520-11081588)
chr7 (70-138)||(6048882-6048951)
chr7 (38-77)||(11084482-11084521)
chr7 (38-80)||(12310159-12310201)
chr7 (198-255)||(40281722-40281778)
chr7 (76-135)||(26210556-26210616)
[»] chr4 (12 HSPs)
chr4 (187-269)||(3759897-3759980)
chr4 (70-138)||(9022359-9022428)
chr4 (187-257)||(47151226-47151295)
chr4 (70-138)||(52043591-52043660)
chr4 (70-137)||(10112925-10112993)
chr4 (70-138)||(38208892-38208961)
chr4 (38-77)||(18534976-18535015)
chr4 (70-136)||(54906630-54906697)
chr4 (69-136)||(9863764-9863833)
chr4 (192-257)||(12102019-12102083)
chr4 (70-137)||(28453740-28453808)
chr4 (198-246)||(53405066-53405114)
[»] chr3 (10 HSPs)
chr3 (187-257)||(15823938-15824008)
chr3 (73-137)||(7768552-7768617)
chr3 (70-136)||(11066564-11066631)
chr3 (74-136)||(11072920-11072983)
chr3 (190-253)||(27703505-27703568)
chr3 (70-135)||(13419865-13419931)
chr3 (70-136)||(23637006-23637075)
chr3 (72-137)||(31151327-31151395)
chr3 (103-136)||(53973837-53973870)
chr3 (70-136)||(27420633-27420701)
[»] chr6 (7 HSPs)
chr6 (187-261)||(7293715-7293789)
chr6 (69-130)||(17904570-17904632)
chr6 (70-136)||(30443336-30443403)
chr6 (70-138)||(30445552-30445621)
chr6 (70-138)||(22858162-22858231)
chr6 (70-117)||(4595049-4595097)
chr6 (70-125)||(6843178-6843234)
[»] chr2 (9 HSPs)
chr2 (187-262)||(27248242-27248316)
chr2 (70-141)||(39287182-39287254)
chr2 (191-348)||(30720958-30721114)
chr2 (73-136)||(41304604-41304668)
chr2 (70-141)||(27248123-27248194)
chr2 (69-136)||(41303252-41303320)
chr2 (70-137)||(43139354-43139422)
chr2 (38-77)||(40699446-40699485)
chr2 (39-77)||(39680045-39680083)
[»] chr5 (11 HSPs)
chr5 (73-138)||(29748349-29748415)
chr5 (187-257)||(13294562-13294634)
chr5 (70-138)||(15224978-15225050)
chr5 (70-140)||(26406687-26406757)
chr5 (70-125)||(32520442-32520497)
chr5 (187-240)||(13295636-13295689)
chr5 (198-249)||(27912412-27912463)
chr5 (70-136)||(35430171-35430238)
chr5 (76-136)||(2144780-2144841)
chr5 (70-138)||(17413375-17413444)
chr5 (70-117)||(13294703-13294751)
[»] scaffold0045 (1 HSPs)
scaffold0045 (38-77)||(85336-85375)
[»] scaffold0008 (1 HSPs)
scaffold0008 (75-128)||(57657-57711)


Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-134; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 8 - 356
Target Start/End: Original strand, 31047666 - 31048014
Alignment:
Q  8 ccaagaatatgaaaatataagataattgtttctcttctcgtgaccaaaagactcaatcctattagtgtttgttgccaagagagtactctacaaacctagt 107  Q
    |||| |||||||| ||||||||||||  ||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  31047666 ccaaaaatatgaacatataagataatcttttctcttctcgtgaccaagagactcaatcatattagtgtttattgccaagagagtactctacaaacctagt 31047765  T
Q  108 tttgttgttggtttctaaacccttgttttctactatttacatccnnnnnnncatctgacgatctctatttatnnnnnnntaaaaccctcaaaatttggaa 207  Q
    ||||||||||| |||||||| ||||||||||||||| |||||||       |||||||| ||||||||||||       |||||||||||||||||||||    
T  31047766 tttgttgttggcttctaaactcttgttttctactatctacatcctttttttcatctgacaatctctatttataaaaaaataaaaccctcaaaatttggaa 31047865  T
Q  208 caaatctcacgctgaaaatacgcttttatttttctccttcagcgcaaaattggggcccgattgttcatgagacaaaagtctcaaaactggtcccaaaatc 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  31047866 caaatctcacgctgaaaatacgcttttatttttctccttcagcgcaaaattggggcccgattgttcacgagacaaaagtctcaaaactagtcccaaaatc 31047965  T
Q  308 ggggtccagtttctccaaatcggaggtcaattttgacagattctaaaac 356  Q
    |||||||||||||||||||||  ||||||||||||||| ||||||||||    
T  31047966 ggggtccagtttctccaaatcataggtcaattttgacaaattctaaaac 31048014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 71 - 141
Target Start/End: Complemental strand, 32261103 - 32261032
Alignment:
Q  71 agtgtttgttgccaagagagtactctacaaacct-agttttgttgttggtttctaaacccttgttttctact 141  Q
    ||||||||||| |||||||  ||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  32261103 agtgtttgttgtcaagagaaaactctacaaaccttagttttgttgttggcttctaaacccttgttttctact 32261032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 73 - 136
Target Start/End: Complemental strand, 49959105 - 49959041
Alignment:
Q  73 tgtttgttgccaagagagtactctacaaacc-tagttttgttgttggtttctaaacccttgtttt 136  Q
    ||||||||||||||||  | ||||||||||| ||||||||||||||| |||||||||||||||||    
T  49959105 tgtttgttgccaagaggattctctacaaaccatagttttgttgttggcttctaaacccttgtttt 49959041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 187 - 229
Target Start/End: Original strand, 13125793 - 13125835
Alignment:
Q  187 taaaaccctcaaaatttggaacaaatctcacgctgaaaatacg 229  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  13125793 taaaaccctcaaaattaggaacaaatctcacgctgaaaatacg 13125835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 138
Target Start/End: Complemental strand, 27916566 - 27916497
Alignment:
Q  70 tagtgtttgttgccaagagagtactctacaaacc-tagttttgttgttggtttctaaacccttgttttct 138  Q
    |||||||||||||||||||   |||||||||||| ||||||| ||| ||| |||||||||||||||||||    
T  27916566 tagtgtttgttgccaagagcaaactctacaaaccctagttttcttgctggcttctaaacccttgttttct 27916497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 248
Target Start/End: Original strand, 20566987 - 20567044
Alignment:
Q  190 aaccctcaaaatttggaacaaatctcacgctgaaaatacgcttttatttttctccttca 248  Q
    ||||||||||||  ||||||||||||||| |||||||| | ||||||||||||||||||    
T  20566987 aaccctcaaaata-ggaacaaatctcacgttgaaaatatgtttttatttttctccttca 20567044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 254
Target Start/End: Original strand, 26332893 - 26332958
Alignment:
Q  189 aaaccctcaaaatttggaacaaatctcacgctg-aaaatacgcttttatttttctccttcagcgcaa 254  Q
    |||||||||||||||  |||||||||||||||| |||||||  |||||||||| |||||||||||||    
T  26332893 aaaccctcaaaatttaaaacaaatctcacgctgaaaaatac-attttatttttatccttcagcgcaa 26332958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 125
Target Start/End: Complemental strand, 14353026 - 14352970
Alignment:
Q  70 tagtgtttgttgccaagagagtactctacaaa-cctagttttgttgttggtttctaa 125  Q
    ||||||||||||||||||||   ||||||||| ||||||||||||||||| ||||||    
T  14353026 tagtgtttgttgccaagagaaatctctacaaaccctagttttgttgttggcttctaa 14352970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 257
Target Start/End: Complemental strand, 37990607 - 37990547
Alignment:
Q  197 aaaatttggaacaaatctcacgctgaaaatacgcttttatttttctccttcagcgcaaaat 257  Q
    |||||| |||||||||||||   |||||||||  |||||||||||||||||||||| ||||    
T  37990607 aaaattaggaacaaatctcattttgaaaatacatttttatttttctccttcagcgcgaaat 37990547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 70 - 136
Target Start/End: Original strand, 26332771 - 26332837
Alignment:
Q  70 tagtgtttgttgccaagagagtactctacaaa-cctagttttgttgttggtttctaaacccttgtttt 136  Q
    |||||||||||||||||||   |||||||||| |||| ||||| |||||| |||||||||||||||||    
T  26332771 tagtgtttgttgccaagagcaaactctacaaaccctatttttg-tgttggcttctaaacccttgtttt 26332837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 77
Target Start/End: Complemental strand, 18839724 - 18839684
Alignment:
Q  37 ttctcttctcgtgaccaaaagactcaatcctattagtgttt 77  Q
    |||||||||||| ||||| ||||||||||||| ||||||||    
T  18839724 ttctcttctcgtaaccaagagactcaatcctaatagtgttt 18839684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 187 - 269
Target Start/End: Original strand, 33839263 - 33839345
Alignment:
Q  187 taaaaccctcaaaatttggaacaaatctcacgctgaaaatacgcttttatttttctccttcagcgcaaaattggggcccgatt 269  Q
    |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||||| |||| ||||||    
T  33839263 taaaaccctcaaaatttggaacaaatctcatgctgaaaatacgtttttatttttctccatcagcgcaaaatcgggggccgatt 33839345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 70 - 137
Target Start/End: Original strand, 31573934 - 31574002
Alignment:
Q  70 tagtgtttgttgccaagagagtactctacaaa-cctagttttgttgttggtttctaaacccttgttttc 137  Q
    ||||||||||||||||||||  |||||||||| |||||||||  |||||| ||||||||| ||||||||    
T  31573934 tagtgtttgttgccaagagaaaactctacaaatcctagttttcgtgttggcttctaaacctttgttttc 31574002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 194 - 257
Target Start/End: Original strand, 31574083 - 31574146
Alignment:
Q  194 ctcaaaatttggaacaaatctcacgctgaaaatacgcttttatttttctccttcagcgcaaaat 257  Q
    |||||||||||||||||| ||||||||||||||||| || | ||||| | ||||||| ||||||    
T  31574083 ctcaaaatttggaacaaaactcacgctgaaaatacgtttatgtttttattcttcagcacaaaat 31574146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 256
Target Start/End: Original strand, 33021225 - 33021293
Alignment:
Q  187 taaaaccctcaaaatttggaacaaatctcacgctga-aaatacgcttttatttttctccttcagcgcaaaa 256  Q
    ||||||||| |||||||  ||||||||||||||||| ||||||| ||||| ||||||||||||||||||||    
T  33021225 taaaacccttaaaatttacaacaaatctcacgctgagaaatacg-tttta-ttttctccttcagcgcaaaa 33021293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 192 - 257
Target Start/End: Complemental strand, 17847524 - 17847459
Alignment:
Q  192 ccctcaaaatttggaacaaatctcacgctgaaaatacgcttttatttttctccttcagcgcaaaat 257  Q
    ||||||||||||||||||||||| | |||||||||| | || ||||||||| | |||||| |||||    
T  17847524 ccctcaaaatttggaacaaatctgaagctgaaaatatgtttctatttttctgcatcagcgtaaaat 17847459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 136
Target Start/End: Original strand, 13986035 - 13986099
Alignment:
Q  73 tgtttgttgccaagagagtactctacaaac-ctagttttgttgttggtttctaaacccttgtttt 136  Q
    |||||||| ||||||||  ||||||||||  |||||||||||||||  |||||||||||||||||    
T  13986035 tgtttgtttccaagagaaaactctacaaattctagttttgttgttgacttctaaacccttgtttt 13986099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 77
Target Start/End: Original strand, 4812631 - 4812669
Alignment:
Q  39 ctcttctcgtgaccaaaagactcaatcctattagtgttt 77  Q
    |||||| ||||||||||||||||||||||| ||||||||    
T  4812631 ctcttcccgtgaccaaaagactcaatcctaatagtgttt 4812669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 77
Target Start/End: Complemental strand, 28332669 - 28332631
Alignment:
Q  39 ctcttctcgtgaccaaaagactcaatcctattagtgttt 77  Q
    |||||||||||||||| ||||||||||||| ||||||||    
T  28332669 ctcttctcgtgaccaagagactcaatcctaatagtgttt 28332631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 187 - 259
Target Start/End: Complemental strand, 8260441 - 8260369
Alignment:
Q  187 taaaaccctcaaaatttggaacaaatctcacgctgaaaatacgcttttatttttctccttcagcgcaaaattg 259  Q
    ||||||| |||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  8260441 taaaaccatcaaaattaggaacaaatctcacgctgaaaatacgtttttatttttcttcttcagcgcaaaattg 8260369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 70 - 137
Target Start/End: Complemental strand, 11081588 - 11081520
Alignment:
Q  70 tagtgtttgttgccaagagagtactctacaaacc-tagttttgttgttggtttctaaacccttgttttc 137  Q
    |||||||||||||||||||| | ||||||||||| ||||||||||||||| ||||||||||||||||||    
T  11081588 tagtgtttgttgccaagagaattctctacaaaccctagttttgttgttggcttctaaacccttgttttc 11081520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 70 - 138
Target Start/End: Complemental strand, 6048951 - 6048882
Alignment:
Q  70 tagtgtttgttgccaagagagtactctacaaacc-tagttttgttgttggtttctaaacccttgttttct 138  Q
    |||||||||||||||||||| | || |||||||| |||||||| |||||| |||||||||||||||||||    
T  6048951 tagtgtttgttgccaagagaattctttacaaaccctagttttgatgttggcttctaaacccttgttttct 6048882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 38 - 77
Target Start/End: Complemental strand, 11084521 - 11084482
Alignment:
Q  38 tctcttctcgtgaccaaaagactcaatcctattagtgttt 77  Q
    ||||||||||||||||| ||||||||||||| ||||||||    
T  11084521 tctcttctcgtgaccaagagactcaatcctaatagtgttt 11084482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 80
Target Start/End: Original strand, 12310159 - 12310201
Alignment:
Q  38 tctcttctcgtgaccaaaagactcaatcctattagtgtttgtt 80  Q
    ||||||| ||||||||| ||||||||||||| |||||||||||    
T  12310159 tctcttcccgtgaccaagagactcaatcctaatagtgtttgtt 12310201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 255
Target Start/End: Original strand, 40281722 - 40281778
Alignment:
Q  198 aaatttggaacaaatctcacgctgaaaatacgcttttatttttctccttcagcgcaaa 255  Q
    |||||||||||| || |||||||||| ||||| |||| ||||||||||||||| ||||    
T  40281722 aaatttggaacagatatcacgctgaagatacg-ttttttttttctccttcagcacaaa 40281778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 135
Target Start/End: Complemental strand, 26210616 - 26210556
Alignment:
Q  76 ttgttgccaagagagtactctacaaa-cctagttttgttgttggtttctaaacccttgttt 135  Q
    |||||||||||||| | ||||||||| ||||||||||  ||||| ||||||| ||||||||    
T  26210616 ttgttgccaagagaattctctacaaaccctagttttgaggttggattctaaaaccttgttt 26210556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 187 - 269
Target Start/End: Complemental strand, 3759980 - 3759897
Alignment:
Q  187 taaaaccctcaaaatttggaacaaatctcacgctgaaaatacgcttttat-ttttctccttcagcgcaaaattggggcccgatt 269  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||| | |||||||    
T  3759980 taaatccctcaaaatttggaacaaatctcacgctgaaaatacgcttttattttttctccttccgagcaaaattgtgtcccgatt 3759897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 70 - 138
Target Start/End: Complemental strand, 9022428 - 9022359
Alignment:
Q  70 tagtgtttgttgccaagagagtactctacaaa-cctagttttgttgttggtttctaaacccttgttttct 138  Q
    |||||||||||||||||||| | ||||||||| |||||||||| |||||  |||||||||||||||||||    
T  9022428 tagtgtttgttgccaagagaattctctacaaaccctagttttgatgttgacttctaaacccttgttttct 9022359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 187 - 257
Target Start/End: Original strand, 47151226 - 47151295
Alignment:
Q  187 taaaaccctcaaaatttggaacaaatctcacgctgaaaatacgcttttatttttctccttcagcgcaaaat 257  Q
    |||||||||||||||||||||||||| |||||||||||| |  || |||||||| |||||||||| |||||    
T  47151226 taaaaccctcaaaatttggaacaaatgtcacgctgaaaa-atactgttatttttatccttcagcgtaaaat 47151295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 138
Target Start/End: Original strand, 52043591 - 52043660
Alignment:
Q  70 tagtgtttgttgccaagagagtactctacaaacct-agttttgttgttggtttctaaacccttgttttct 138  Q
    ||||||||| || |||||||  ||||||||||||| ||||||| |||||| |||||||||||||||||||    
T  52043591 tagtgtttgctgacaagagaaaactctacaaaccttagttttgatgttggcttctaaacccttgttttct 52043660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 70 - 137
Target Start/End: Complemental strand, 10112993 - 10112925
Alignment:
Q  70 tagtgtttgttgccaagagagtactctacaaacc-tagttttgttgttggtttctaaacccttgttttc 137  Q
    |||||||||||||||||||   |||||||||||| |||||||  |||||| ||||||||||||||||||    
T  10112993 tagtgtttgttgccaagagcaaactctacaaaccctagtttttgtgttggcttctaaacccttgttttc 10112925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 70 - 138
Target Start/End: Original strand, 38208892 - 38208961
Alignment:
Q  70 tagtgtttgttgccaagagagtactctacaaac-ctagttttgttgttggtttctaaacccttgttttct 138  Q
    |||||||||||||||||||| |  ||||||||| |||| | || |||||| |||||||||||||||||||    
T  38208892 tagtgtttgttgccaagagaattttctacaaacgctagatatgatgttggcttctaaacccttgttttct 38208961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 38 - 77
Target Start/End: Original strand, 18534976 - 18535015
Alignment:
Q  38 tctcttctcgtgaccaaaagactcaatcctattagtgttt 77  Q
    ||||||||||||||||| ||||||||||||| ||||||||    
T  18534976 tctcttctcgtgaccaagagactcaatcctaatagtgttt 18535015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 70 - 136
Target Start/End: Complemental strand, 54906697 - 54906630
Alignment:
Q  70 tagtgtttgttgccaagagagtactctacaaa-cctagttttgttgttggtttctaaacccttgtttt 136  Q
    ||||||||||||| ||||||  ||| |||||| ||||||||| ||||||| |||||| ||||||||||    
T  54906697 tagtgtttgttgcaaagagaaaactttacaaaccctagttttattgttggcttctaagcccttgtttt 54906630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 136
Target Start/End: Complemental strand, 9863833 - 9863764
Alignment:
Q  69 ttagtgtttgttgccaagagagtactctacaaacc-tagtttt-gttgttggtttctaaacccttgtttt 136  Q
    |||||||||||||||||||    |||||||||||| ||||||| ||| |||| |||||||||||||||||    
T  9863833 ttagtgtttgttgccaagaacaaactctacaaaccctagtttttgtttttggcttctaaacccttgtttt 9863764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 257
Target Start/End: Complemental strand, 12102083 - 12102019
Alignment:
Q  192 ccctcaaaatttggaacaaatctcacgctgaaaatacgcttttatttttctccttcagcgcaaaat 257  Q
    |||| |||| |||||||||||||||||| ||||||||| |||||||||| | | |||||| |||||    
T  12102083 ccctaaaaaattggaacaaatctcacgcagaaaatacg-ttttatttttatgcatcagcgtaaaat 12102019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 137
Target Start/End: Complemental strand, 28453808 - 28453740
Alignment:
Q  70 tagtgtttgttgccaagagagtactctacaaacc-tagttttgttgttggtttctaaacccttgttttc 137  Q
    |||||||| ||||||||||   ||||| |||||| |||||||  |||||| ||||||||||||||||||    
T  28453808 tagtgtttcttgccaagagcaaactctgcaaaccctagttttagtgttggcttctaaacccttgttttc 28453740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 246
Target Start/End: Complemental strand, 53405114 - 53405066
Alignment:
Q  198 aaatttggaacaaatctcacgctgaaaatacgcttttatttttctcctt 246  Q
    |||||||||||||||  ||| ||||||||||| |||| |||||||||||    
T  53405114 aaatttggaacaaataccacactgaaaatacgtttttttttttctcctt 53405066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 187 - 257
Target Start/End: Original strand, 15823938 - 15824008
Alignment:
Q  187 taaaaccctcaaaatttggaacaaatctcacgctgaaaatacgcttttatttttctccttcagcgcaaaat 257  Q
    |||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||| |||||    
T  15823938 taaaaccctcaaaattaggaacaaatctcacgctgaaaatacatttttatttttctccttcagcgtaaaat 15824008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 73 - 137
Target Start/End: Complemental strand, 7768617 - 7768552
Alignment:
Q  73 tgtttgttgccaagagagtactctacaaacct-agttttgttgttggtttctaaacccttgttttc 137  Q
    ||||||||||||||||| | |||||||||||| ||||||| |||||| ||||||||||||||||||    
T  7768617 tgtttgttgccaagagaattctctacaaaccttagttttgatgttggcttctaaacccttgttttc 7768552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 70 - 136
Target Start/End: Complemental strand, 11066631 - 11066564
Alignment:
Q  70 tagtgtttgttgccaagagagtactctacaaacct-agttttgttgttggtttctaaacccttgtttt 136  Q
    |||||||| |||||||||||  ||||||||||| | |||||||||||||  |||||||||||||||||    
T  11066631 tagtgtttattgccaagagaaaactctacaaacttcagttttgttgttgacttctaaacccttgtttt 11066564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 74 - 136
Target Start/End: Complemental strand, 11072983 - 11072920
Alignment:
Q  74 gtttgttgccaagagagtactctacaaac-ctagttttgttgttggtttctaaacccttgtttt 136  Q
    ||||||||||||||||  ||||| ||||| |||||||||||||||  |||||||||||||||||    
T  11072983 gtttgttgccaagagaaaactctccaaactctagttttgttgttgacttctaaacccttgtttt 11072920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 253
Target Start/End: Original strand, 27703505 - 27703568
Alignment:
Q  190 aaccctcaaaatttggaacaaatctcacgctgaaaatacgcttttatttttctccttcagcgca 253  Q
    |||||| |||| | ||| ||||||||| |||||||||||| |||||||||||| ||||||||||    
T  27703505 aaccctaaaaaataggatcaaatctcatgctgaaaatacgtttttatttttcttcttcagcgca 27703568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 135
Target Start/End: Complemental strand, 13419931 - 13419865
Alignment:
Q  70 tagtgtttgttgccaagagagtactctacaaa-cctagttttgttgttggtttctaaacccttgttt 135  Q
    |||||||||||||||||||   |||||||||| ||||||||| ||||||| || |||||| ||||||    
T  13419931 tagtgtttgttgccaagagcaaactctacaaaccctagttttcttgttggcttttaaacctttgttt 13419865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 136
Target Start/End: Complemental strand, 23637075 - 23637006
Alignment:
Q  70 tagtgtttgttgccaagagagtactcta--caaacc-tagttttgttgttggtttctaaacccttgtttt 136  Q
    |||||||||||||||||||   ||||||  |||||| ||||||| ||||||| |||||||||||||||||    
T  23637075 tagtgtttgttgccaagagcagactctatacaaaccctagttttcttgttggcttctaaacccttgtttt 23637006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 137
Target Start/End: Complemental strand, 31151395 - 31151327
Alignment:
Q  72 gtgtttgttgccaagagagtactcta--caaacc-tagttttgttgttggtttctaaacccttgttttc 137  Q
    |||||||||||||||||   ||||||  |||||| ||||||| |||||| |||||||||||||||||||    
T  31151395 gtgtttgttgccaagagcaaactctatacaaaccctagttttcttgttgatttctaaacccttgttttc 31151327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 136
Target Start/End: Original strand, 53973837 - 53973870
Alignment:
Q  103 ctagttttgttgttggtttctaaacccttgtttt 136  Q
    |||||||||||||||| |||||||||||||||||    
T  53973837 ctagttttgttgttggcttctaaacccttgtttt 53973870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 136
Target Start/End: Complemental strand, 27420701 - 27420633
Alignment:
Q  70 tagtgtttgttgccaagagagtactctacaaa-cctagttttgttgttggtttct-aaacccttgtttt 136  Q
    |||||||||||||||||| | | ||||||||| |||| |||||||| ||| |||| |||||||||||||    
T  27420701 tagtgtttgttgccaagaaaattctctacaaaccctaattttgttgctggcttctaaaacccttgtttt 27420633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 187 - 261
Target Start/End: Complemental strand, 7293789 - 7293715
Alignment:
Q  187 taaaaccctcaaaatttggaacaaatctcacgctgaaaa-tacgcttttatttttctccttcagcgcaaaattggg 261  Q
    |||||||||||||||||||||||||||||| ||| |||| |||| |||||||||||||||||||||||||||||||    
T  7293789 taaaaccctcaaaatttggaacaaatctcaagctaaaaaatacg-ttttatttttctccttcagcgcaaaattggg 7293715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 69 - 130
Target Start/End: Original strand, 17904570 - 17904632
Alignment:
Q  69 ttagtgtttgttgccaagagagtactctacaaacc-tagttttgttgttggtttctaaaccct 130  Q
    |||||||||||||| ||||||  |||||||||||| ||||||||||||||| |||||||||||    
T  17904570 ttagtgtttgttgcaaagagaaaactctacaaaccctagttttgttgttggcttctaaaccct 17904632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 70 - 136
Target Start/End: Complemental strand, 30443403 - 30443336
Alignment:
Q  70 tagtgtttgttgccaagagagtactctacaaacc-tagttttgttgttggtttctaaacccttgtttt 136  Q
    |||||||||||||||| ||| | ||||||||| | |||||||| |||||| |||||||||||||||||    
T  30443403 tagtgtttgttgccaacagaattctctacaaatcatagttttgatgttggcttctaaacccttgtttt 30443336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 70 - 138
Target Start/End: Complemental strand, 30445621 - 30445552
Alignment:
Q  70 tagtgtttgttgccaagagagtactctacaaa-cctagttttgttgttggtttctaaacccttgttttct 138  Q
    |||||||||||||||||||| |  |||||||| |||||||||  |||||| ||||||||| |||||||||    
T  30445621 tagtgtttgttgccaagagaattatctacaaaccctagttttaatgttggcttctaaaccattgttttct 30445552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 138
Target Start/End: Original strand, 22858162 - 22858231
Alignment:
Q  70 tagtgtttgttgccaagagagtactctacaaacc-tagttttgttgttggtttctaaacccttgttttct 138  Q
    ||||||||||| ||||||||  | |||||||||| |||||||  |||| | |||||||||||||||||||    
T  22858162 tagtgtttgttaccaagagaaaattctacaaaccctagtttttgtgttagcttctaaacccttgttttct 22858231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 117
Target Start/End: Complemental strand, 4595097 - 4595049
Alignment:
Q  70 tagtgtttgttgccaagagagtactctacaaa-cctagttttgttgttg 117  Q
    ||||||||||||||||| ||  |||||||||| ||||||||||||||||    
T  4595097 tagtgtttgttgccaagtgaaaactctacaaaccctagttttgttgttg 4595049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 125
Target Start/End: Complemental strand, 6843234 - 6843178
Alignment:
Q  70 tagtgtttgttgccaagagagtactctacaaacc-tagttttgttgttggtttctaa 125  Q
    |||||||||||||||||| | | ||||||||||| ||||||| ||||||| ||||||    
T  6843234 tagtgtttgttgccaagaaaattctctacaaaccatagttttattgttggcttctaa 6843178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 187 - 262
Target Start/End: Original strand, 27248242 - 27248316
Alignment:
Q  187 taaaaccctcaaaatttggaacaaatctcacgctgaaaatacgcttttatttttctccttcagcgcaaaattgggg 262  Q
    ||||||||||||| ||| ||||||||||||||||||| ||||| ||||||||||||||||| || |||||||||||    
T  27248242 taaaaccctcaaa-tttagaacaaatctcacgctgaagatacgtttttatttttctccttcggcccaaaattgggg 27248316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 70 - 141
Target Start/End: Complemental strand, 39287254 - 39287182
Alignment:
Q  70 tagtgtttgttgccaagagagtactctacaaacc-tagttttgttgttggtttctaaacccttgttttctact 141  Q
    ||||||||||||| |||||| | ||||||||||| ||||||| ||||||| ||||||||||||||||||||||    
T  39287254 tagtgtttgttgctaagagaattctctacaaaccctagttttcttgttggcttctaaacccttgttttctact 39287182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 348
Target Start/End: Original strand, 30720958 - 30721114
Alignment:
Q  191 accctcaaaatttggaacaaatctcacgctgaaaatacgcttttatttttctccttcagcgcaaaattggggcccgattgttcatgagacaaaagtctca 290  Q
    ||||||||||||  |||||||||||||||  |||||||  ||| |||||||||||||| ||||||| | | | || ||| || | ||||||||||||| |    
T  30720958 accctcaaaattaagaacaaatctcacgccaaaaatacattttaatttttctccttcaacgcaaaaatagtggcccattttttacgagacaaaagtctaa 30721057  T
Q  291 aaactggtcccaaaatcggggtccagtttctccaaatcggaggtcaattttgacagat 348  Q
    ||  |||| ||||||| |||| |   ||||||||||| || || |||||||| |||||    
T  30721058 aatttggttccaaaat-gggggctgatttctccaaattgggggccaattttggcagat 30721114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 73 - 136
Target Start/End: Original strand, 41304604 - 41304668
Alignment:
Q  73 tgtttgttgccaagagagtactctacaaacc-tagttttgttgttggtttctaaacccttgtttt 136  Q
    ||||||||||||| |||  ||| |||||||| ||||||||||||||| |||||||||||||||||    
T  41304604 tgtttgttgccaatagaaaactttacaaaccctagttttgttgttggcttctaaacccttgtttt 41304668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 141
Target Start/End: Original strand, 27248123 - 27248194
Alignment:
Q  70 tagtgtttgttgccaagagagtactctacaaacc-tagttttgttgttggtttctaaacccttgttttctact 141  Q
    |||||||||||||||||||| |  |||||||||| ||| ||||||||||| |||| || ||||||||||||||    
T  27248123 tagtgtttgttgccaagagaattatctacaaaccttagctttgttgttggcttct-aatccttgttttctact 27248194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 136
Target Start/End: Original strand, 41303252 - 41303320
Alignment:
Q  69 ttagtgtttgttgccaagagagtactctacaaac-ctagttttgttgttggtttctaaacccttgtttt 136  Q
    ||||||||||||||||||  |  ||||||||||| |||  ||||||||||| |||||||||||||||||    
T  41303252 ttagtgtttgttgccaagtaaaaactctacaaactctatctttgttgttggcttctaaacccttgtttt 41303320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 137
Target Start/End: Complemental strand, 43139422 - 43139354
Alignment:
Q  70 tagtgtttgttgccaagagagtactctacaaa-cctagttttgttgttggtttctaaacccttgttttc 137  Q
    |||||||||||||||||||   |||||||||| || ||||||  |||||| ||||||||||||||||||    
T  43139422 tagtgtttgttgccaagagcaaactctacaaacccaagtttttgtgttggcttctaaacccttgttttc 43139354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 38 - 77
Target Start/End: Complemental strand, 40699485 - 40699446
Alignment:
Q  38 tctcttctcgtgaccaaaagactcaatcctattagtgttt 77  Q
    ||||||||||||||||| ||||||||||||| ||||||||    
T  40699485 tctcttctcgtgaccaagagactcaatcctaatagtgttt 40699446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 77
Target Start/End: Complemental strand, 39680083 - 39680045
Alignment:
Q  39 ctcttctcgtgaccaaaagactcaatcctattagtgttt 77  Q
    |||||||||||||||| ||||||||||||| ||||||||    
T  39680083 ctcttctcgtgaccaagagactcaatcctaatagtgttt 39680045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 73 - 138
Target Start/End: Complemental strand, 29748415 - 29748349
Alignment:
Q  73 tgtttgttgccaagagagtactctacaaacc-tagttttgttgttggtttctaaacccttgttttct 138  Q
    ||||||||||||||||| | ||||||||||| ||||||| ||||||| |||||||||||||||||||    
T  29748415 tgtttgttgccaagagaattctctacaaaccctagttttcttgttggcttctaaacccttgttttct 29748349  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 187 - 257
Target Start/End: Complemental strand, 13294634 - 13294562
Alignment:
Q  187 taaaaccctcaaaatttgg-aacaaatctcacgctgaaaatacgctttta-tttttctccttcagcgcaaaat 257  Q
    ||||||||||||||||||| || |||||||||| |||||||||| ||||| ||||||||||||| ||||||||    
T  13294634 taaaaccctcaaaatttggaaaaaaatctcacgttgaaaatacgtttttattttttctccttcaacgcaaaat 13294562  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 70 - 138
Target Start/End: Original strand, 15224978 - 15225050
Alignment:
Q  70 tagtgtttgttgccaagagagtactctacaaacc----tagttttgttgttggtttctaaacccttgttttct 138  Q
    |||||||||||||||||||||| |||||||| ||    |||||||| |||||| |||||||||||||||||||    
T  15224978 tagtgtttgttgccaagagagttctctacaagccaccctagttttgatgttggcttctaaacccttgttttct 15225050  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 70 - 140
Target Start/End: Original strand, 26406687 - 26406757
Alignment:
Q  70 tagtgtttgttgccaagagagtactctacaaa-cctagttttgttgttggtttctaaacccttgttttctac 140  Q
    |||||||||||||||||||| | ||||| ||| ||||||||  |||||||||||||||||| ||||||||||    
T  26406687 tagtgtttgttgccaagagaattctctataaaccctagtttgtttgttggtttctaaaccc-tgttttctac 26406757  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 70 - 125
Target Start/End: Complemental strand, 32520497 - 32520442
Alignment:
Q  70 tagtgtttgttgccaagagagtactctacaaacctagttttgttgttggtttctaa 125  Q
    |||||||||||||||  ||||  |||||||||||||||||||||||||| ||||||    
T  32520497 tagtgtttgttgccaccagagatctctacaaacctagttttgttgttggcttctaa 32520442  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 187 - 240
Target Start/End: Complemental strand, 13295689 - 13295636
Alignment:
Q  187 taaaaccctcaaaatttggaacaaatctcacgctgaaaatacgcttttattttt 240  Q
    ||||||||||||||||| ||| |||||||||||| |||||| | ||||||||||    
T  13295689 taaaaccctcaaaatttagaataaatctcacgcttaaaatatgtttttattttt 13295636  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 198 - 249
Target Start/End: Complemental strand, 27912463 - 27912412
Alignment:
Q  198 aaatttggaacaaatctcacgctgaaaatacgcttttatttttctccttcag 249  Q
    ||||||||||||||| |||| ||||| ||||| |||| ||||||||||||||    
T  27912463 aaatttggaacaaatatcacactgaagatacgtttttttttttctccttcag 27912412  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 70 - 136
Target Start/End: Complemental strand, 35430238 - 35430171
Alignment:
Q  70 tagtgtttgttgccaagagagtactctacaaacc-tagttttgttgttggtttctaaacccttgtttt 136  Q
    |||||||| |||||||||||  ||| |||||||| |||||||| |||||  |||||||||||||||||    
T  35430238 tagtgtttattgccaagagaaaactgtacaaaccctagttttgatgttgacttctaaacccttgtttt 35430171  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 2144780 - 2144841
Alignment:
Q  76 ttgttgccaagagagtactctacaaacc-tagttttgttgttggtttctaaacccttgtttt 136  Q
    |||||||||||||   |||||||||||| |||||||  |||||| |||||||||||||||||    
T  2144780 ttgttgccaagagcaaactctacaaaccctagttttagtgttggcttctaaacccttgtttt 2144841  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 138
Target Start/End: Original strand, 17413375 - 17413444
Alignment:
Q  70 tagtgtttgttgccaagagagtactctacaaacc-tagttttgttgttggtttctaaacccttgttttct 138  Q
    |||||||||||||||||||   |||||||||||| |||||||  || ||  |||||||||||||||||||    
T  17413375 tagtgtttgttgccaagagcaaactctacaaaccatagttttagtgctgccttctaaacccttgttttct 17413444  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 117
Target Start/End: Complemental strand, 13294751 - 13294703
Alignment:
Q  70 tagtgtttgttgccaagagagtactctacaaac-ctagttttgttgttg 117  Q
    ||||| |||||||||||||| | |||||||||| |||||||||||||||    
T  13294751 tagtgcttgttgccaagagaattctctacaaactctagttttgttgttg 13294703  T

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Target: scaffold0045 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 38 - 77
Target Start/End: Complemental strand, 85375 - 85336
Alignment:
Q  38 tctcttctcgtgaccaaaagactcaatcctattagtgttt 77  Q
    ||||||||||| ||||||||||||||||||| ||||||||    
T  85375 tctcttctcgtaaccaaaagactcaatcctagtagtgttt 85336  T

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Target: scaffold0008 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 128
Target Start/End: Original strand, 57657 - 57711
Alignment:
Q  75 tttgttgccaagagagtactctacaaac-ctagttttgttgttggtttctaaacc 128  Q
    ||||||||||||||   ||||||||||| |||||||||||||||| |||||||||    
T  57657 tttgttgccaagagtaaactctacaaactctagttttgttgttggcttctaaacc 57711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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