View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18589_high_2 (Length: 719)
Name: NF18589_high_2
Description: NF18589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18589_high_2 |
 | |
|
| [»] scaffold0458 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 638; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 638; E-Value: 0
Query Start/End: Original strand, 1 - 701
Target Start/End: Original strand, 44488957 - 44489657
Alignment:
| Q |
1 |
atatagtctgaaaatgtgtttataaatgaagacaatatatcttcattgtaaaagctgattttgtaaggattgaattagacctaaccaaaagatgtata-- |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44488957 |
atatagtctgaaaatgtgtttataaatgaagacaat----cttcattgtaaaagctgattttgtaaggattgaattagacctaaccaaaagatgtatata |
44489052 |
T |
|
| Q |
99 |
--gtttctgaaaatgaaataaaaattgttttcttaccaaatgttggggaattaaaagttgtccatccatcaccaacactgtgattgccggtgataattgt |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44489053 |
tagtttctgaaaatgaaataaaaattgttttcttaccaaatgttggggaattaaaagttgtccatccatcaccaacactgtgattgccggtgataattgt |
44489152 |
T |
|
| Q |
197 |
tcggttgattccatctccgatcatcatcagatacgccttgttttgagggatagagacatattcttcataaacgccctctttgataaatatcatgaaatat |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44489153 |
tcggttgattccatctccgatcatcatcagatacgccttgttttgagggatagagacatattcttcataaacgccctctttgataaatatcatgaaatat |
44489252 |
T |
|
| Q |
297 |
ccatttgttgcattgatagtgttatttggagcagcagcaacagcatcattgatagttgtaaagtttccactcccatcttgactaacaacaacaatgtccg |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44489253 |
ccatttgttgcattgatagtgttatttggagcagcagcaacagcatcattgatagttgtaaagtttccactcccatcttgactaacaacaacaatgtccc |
44489352 |
T |
|
| Q |
397 |
taaccaaaacaccactttgatcatcatcatcatgggtttctcctccgcctcttgaagaatggtaaatgactctggttcgatttgacatcttcataggcaa |
496 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44489353 |
taaccaaaacaccactttgatcatcatcatcatgggtttctcctccgcctcttgaagaatggtaaatgactctggttcgatttgacatcttcataggcaa |
44489452 |
T |
|
| Q |
497 |
tctaccgtttttgaaacgaggatgcaacccggtagaattccataatgtcttgttcnnnnnnncatgcacccaaccctttgtgaatagatcaagtgaaaca |
596 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44489453 |
tctaccgtttttgaaacgaggatgcaacccggtagaattccataatgtcttgttctttttttcatgcacccaaccctttgtgaatagatcaagtgaaaca |
44489552 |
T |
|
| Q |
597 |
ctgtggagtttgctatcattagagagttggctaataagatcattttctatagtcaaattagaattagccacagtaattagtccatctaaacatgtttgat |
696 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
44489553 |
ctgtagagtttgctatcattagagagttggctaataagatcattttctatagtcaaattagaattagccacggtaattagtccatctaaacatgtttgat |
44489652 |
T |
|
| Q |
697 |
ggttg |
701 |
Q |
| |
|
||||| |
|
|
| T |
44489653 |
ggttg |
44489657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 318 - 382
Target Start/End: Original strand, 44464892 - 44464956
Alignment:
| Q |
318 |
ttatttggagcagcagcaacagcatcattgatagttgtaaagtttccactcccatcttgactaac |
382 |
Q |
| |
|
||||||||||| ||||||| ||||||||| || || |||||||||||||| |||||||||||||| |
|
|
| T |
44464892 |
ttatttggagctgcagcaatagcatcattaatcgtggtaaagtttccacttccatcttgactaac |
44464956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 1e-18; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 315 - 391
Target Start/End: Original strand, 24061844 - 24061920
Alignment:
| Q |
315 |
gtgttatttggagcagcagcaacagcatcattgatagttgtaaagtttccactcccatcttgactaacaacaacaat |
391 |
Q |
| |
|
||||||||||| |||||||| | |||||||||||||| || ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
24061844 |
gtgttatttggtgcagcagctattgcatcattgatagtggtgaagtttccacttccatcttgactaacaacaacaat |
24061920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 315 - 390
Target Start/End: Complemental strand, 39450421 - 39450346
Alignment:
| Q |
315 |
gtgttatttggagcagcagcaacagcatcattgatagttgtaaagtttccactcccatcttgactaacaacaacaa |
390 |
Q |
| |
|
||||||||||| |||||||| || || |||||||| | |||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
39450421 |
gtgttatttggtgcagcagctacggcgtcattgattgcggtaaagtttccacttccatcttgactaacaacgacaa |
39450346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 315 - 390
Target Start/End: Complemental strand, 39471293 - 39471218
Alignment:
| Q |
315 |
gtgttatttggagcagcagcaacagcatcattgatagttgtaaagtttccactcccatcttgactaacaacaacaa |
390 |
Q |
| |
|
||||||||||| |||||||| || || |||||||| | |||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
39471293 |
gtgttatttggtgcagcagctacggcgtcattgattgcggtaaagtttccacttccatcttgactaacaacgacaa |
39471218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0458 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0458
Description:
Target: scaffold0458; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 315 - 390
Target Start/End: Original strand, 3200 - 3275
Alignment:
| Q |
315 |
gtgttatttggagcagcagcaacagcatcattgatagttgtaaagtttccactcccatcttgactaacaacaacaa |
390 |
Q |
| |
|
||||||||||| |||||||| || || |||||||| | |||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
3200 |
gtgttatttggtgcagcagctacggcgtcattgattgcggtaaagtttccacttccatcttgactaacaacgacaa |
3275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University