View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18589_high_21 (Length: 347)
Name: NF18589_high_21
Description: NF18589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18589_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 14 - 328
Target Start/End: Complemental strand, 34366056 - 34365742
Alignment:
| Q |
14 |
agaacctgtgtgaagcagtcatggaagtgcattcttataagagcagctgcaagggtgggatcattgtccaaagctctattcactatgttcttaacaactg |
113 |
Q |
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| T |
34366056 |
agaacctgtatgaagcagtcatggaagtgcattcttataagagcagctgcaagggtgggatcattgtccaaagctctattcactatgttcttaacaactg |
34365957 |
T |
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| Q |
114 |
gttcaacaaaagggcaactcatcaaatagtagttcatgtttaaccctcccccgaatccgaacccgaattggcatgtaatcacctctattagcataaaaaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34365956 |
gttcaacaaaagggcaactcatcaaatagtagttcatgtttaaccctcccccgaatccgaacccgaattggcatgtaatcacctctattagcataaaaaa |
34365857 |
T |
|
| Q |
214 |
tgtcatcaatttaaccattaccattttcaatgacttcatagatgatgtatacaccatcttcaaacaattaagggtatttattaaggaatataaagtttgg |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34365856 |
tgtcatcaatttaaccattaccattttcaatgacttcatagatgatgtatacatcatcttcaaacaattaagggtatttattaaggaatataaagtttgg |
34365757 |
T |
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| Q |
314 |
tttatgagacctaag |
328 |
Q |
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||||||||||||||| |
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| T |
34365756 |
tttatgagacctaag |
34365742 |
T |
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