View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18589_high_24 (Length: 312)
Name: NF18589_high_24
Description: NF18589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18589_high_24 |
 | |
|
| [»] chr7 (3 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 157; Significance: 2e-83; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 124 - 312
Target Start/End: Original strand, 41763972 - 41764161
Alignment:
| Q |
124 |
aataaaaaatgatccaagtcnnnnnnntttaacatgagtatttgagacatttaaatatacttttgacccaacacaacttctatgaatctaaa-tcttatg |
222 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
41763972 |
aataaaaaatgatccaagtcaaaaaaatttaacatgaatatttgagacatttaaatatacttttgacccaacacaacttctatgaatctaaaatcttatg |
41764071 |
T |
|
| Q |
223 |
gttttcagcagaaaccaaacctggcaggaaagctcagcaacttagacagagtcgaagctgatctactacaagctagagctgcaataagaa |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41764072 |
gttttcagcagaaaccaaacctggcaggaaagctcagcaacttagacagagtcgaagctgatctactacaagctagagctgcaataagaa |
41764161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 16 - 124
Target Start/End: Original strand, 22488488 - 22488596
Alignment:
| Q |
16 |
atggcatagaataaataattaataaaatgaaaaacatttcatcaaatggtttgaaatatgtcgtgtgcattcgtgcatgttatcctgtcgtgctatcaag |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
22488488 |
atggcatagaataaataattaataaaatgaaaaacatttcatcaaatggtttgaaatatgtcgtgtgcattcgtgcatgttattctgtcgtgctatcaag |
22488587 |
T |
|
| Q |
116 |
catttttca |
124 |
Q |
| |
|
||||||||| |
|
|
| T |
22488588 |
catttttca |
22488596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 231 - 312
Target Start/End: Original strand, 41756122 - 41756203
Alignment:
| Q |
231 |
cagaaaccaaacctggcaggaaagctcagcaacttagacagagtcgaagctgatctactacaagctagagctgcaataagaa |
312 |
Q |
| |
|
|||||||||||||| || |||| |||||| |||||||||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
41756122 |
cagaaaccaaacctaccaagaaaattcagcatcttagacagaaccgaagctggtctactacaagctagagctgcaataagaa |
41756203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 8557996 - 8558103
Alignment:
| Q |
16 |
atggcatagaataaataattaataaaatgaaaaacatttcatcaaatggtttgaaatatgtcgtgtgcattcgtgcatgttatcctgtcgtgctatcaag |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
8557996 |
atggcatagaataaataattaataaaatgaaaaacatttcatcaaatggtttgaaatatgtcgtgtgcattcatgcatgttattctgtcgtgctatcaag |
8558095 |
T |
|
| Q |
116 |
catttttc |
123 |
Q |
| |
|
|||||||| |
|
|
| T |
8558096 |
catttttc |
8558103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 25 - 124
Target Start/End: Original strand, 33508262 - 33508361
Alignment:
| Q |
25 |
aataaataattaataaaatgaaaaacatttcatcaaatggtttgaaatatgtcgtgtgcattcgtgcatgttatcctgtcgtgctatcaagcatttttca |
124 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| || || | ||||||||||||| ||||||| ||| | |||||||||||||||||||||||| |
|
|
| T |
33508262 |
aataaataattaataaaatgaaaaacgattcatcaaacggcttaagatatgtcgtgtgccttcgtgcttgtcactatgtcgtgctatcaagcatttttca |
33508361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 130
Target Start/End: Original strand, 13798461 - 13798515
Alignment:
| Q |
76 |
tcgtgtgcattcgtgcatgttatcctgtcgtgctatcaagcatttttcaataaaa |
130 |
Q |
| |
|
|||||||| ||||||| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
13798461 |
tcgtgtgccttcgtgcttgttaatatgtcgtgctatcaagcatttttcaataaaa |
13798515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 125
Target Start/End: Original strand, 11210277 - 11210326
Alignment:
| Q |
76 |
tcgtgtgcattcgtgcatgttatcctgtcgtgctatcaagcatttttcaa |
125 |
Q |
| |
|
|||||||| ||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
11210277 |
tcgtgtgccttcgtgcttgttagtatgtcgtgctatcaagcatttttcaa |
11210326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 31367683 - 31367739
Alignment:
| Q |
78 |
gtgtgcattcgtgcatgttatcctgtcgtgctatcaagcatttttcaataaaaaatg |
134 |
Q |
| |
|
|||||| ||||||| ||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
31367683 |
gtgtgccttcgtgcttgttagtatgtcgtgctatcaagcatttttcataaaaaaatg |
31367739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University