View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18589_high_33 (Length: 250)
Name: NF18589_high_33
Description: NF18589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18589_high_33 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 40707671 - 40707438
Alignment:
| Q |
1 |
caattagaatgcttaagttcgggagttatgattcgatacacattagtgacatacctgattcaagttgtaagacatttcaagagttacaacctaatccaag |
100 |
Q |
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| T |
40707671 |
caattagaatgcttaagttcgggagttatgattcgatacacattggtgacatacctgattcaagttgtaagacatttcaagagttacaacctaatccaag |
40707572 |
T |
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| Q |
101 |
gtagggtcccaatctatacaaaaactttatttattgctctttatgttttggtctagcagtgatcgaggacattatagatattcttaaaattctgtcttac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40707571 |
gtagggtcccaatctatacaaaaactttatttattgctctttatgttttggtctagcagtgatcgaggacattatagatattcttaaaattctgtcttac |
40707472 |
T |
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| Q |
201 |
agtatattttcatactttgtagtttcaccataca |
234 |
Q |
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| T |
40707471 |
attatattttcatactttgtagtttcaccataca |
40707438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 170 - 231
Target Start/End: Complemental strand, 26880542 - 26880481
Alignment:
| Q |
170 |
cattatagatattcttaaaattctgtcttacagtatattttcatactttgtagtttcaccat |
231 |
Q |
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| T |
26880542 |
cattatagatactcttgaaatttcgtcttacattgtattttcatactttgtagtttcaccat |
26880481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 234
Target Start/End: Complemental strand, 40250248 - 40250193
Alignment:
| Q |
179 |
tattcttaaaattctgtcttacagtatattttcatactttgtagtttcaccataca |
234 |
Q |
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||||||| ||||| |||||||| |||||||||||| |||| |||||||||||||| |
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| T |
40250248 |
tattcttgaaatttcgtcttacattatattttcatattttgcagtttcaccataca |
40250193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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