View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18589_high_38 (Length: 236)
Name: NF18589_high_38
Description: NF18589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18589_high_38 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 39715359 - 39715579
Alignment:
| Q |
16 |
ttcaaatctaaaacagcatagagaaatcaataatattaagcaatgagcacaaaactctcaaagaaatagatcagagaattgaaaaagttatctgtttttt |
115 |
Q |
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| T |
39715359 |
ttcaaatctaaaacagcatagagaaatcaataatattaagcaatgagcacaaaactctcaaagaaatagatcagagaattgaaaaagttatctgtttttt |
39715458 |
T |
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| Q |
116 |
acctcttagttgatatgctacacttagattttccatgaaaggatatacaaggattctttcagttgatgttgtacagaatccaattagtcttaggagattt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39715459 |
acctcttagttgatatgctacacttagattttccatgaaaggatatacaaggattctttcagttgatgttgtacagaatccaattagtcttaggagattt |
39715558 |
T |
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| Q |
216 |
ctatgaactgcaacgctaatc |
236 |
Q |
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||||||||||||||||||||| |
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| T |
39715559 |
ctatgaactgcaacgctaatc |
39715579 |
T |
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