View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18589_high_39 (Length: 227)
Name: NF18589_high_39
Description: NF18589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18589_high_39 |
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Alignment Details
Target: chr8 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 39715774 - 39715998
Alignment:
| Q |
1 |
tccaaaagaaattttgctctcatcttcacctgtaaaatttatcatatattacttactttccgatggagttttgaaaatgtttcttatgttttatataaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39715774 |
tccaaaagaaattttgctctcatcttcacctgtaaaatttatcatatattacttactttccgatggagttttgaaaatgtttcttatgttttatataaaa |
39715873 |
T |
|
| Q |
101 |
cagaagaaaggtacttcttactaggccttattatgtcatgctgagacaaagtaatttgacnnnnnnnnnnnnnnnnttacctaaaacatcaacaaagacg |
200 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
39715874 |
cagaagaaaggtacttcctactaggccttattatgtcatgctgagacaaagtaatttgac-aaaaaaaaggaaaaattacctaaaacatcaacaaagacg |
39715972 |
T |
|
| Q |
201 |
tcacttttgtgtctgatcttttgatg |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
39715973 |
tcacttttgtgtctgatcttttgatg |
39715998 |
T |
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