View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18589_high_4 (Length: 665)

Name: NF18589_high_4
Description: NF18589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18589_high_4
NF18589_high_4
[»] chr5 (1 HSPs)
chr5 (15-650)||(975635-976267)


Alignment Details
Target: chr5 (Bit Score: 536; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 15 - 650
Target Start/End: Complemental strand, 976267 - 975635
Alignment:
Q  15 aatattttacgcgacaaattcaaataaaacttaccattctctattttannnnnnngaataatcgaaatccctaatctctataaaacaaaaactacattta 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||| ||||||||||||||||||||||||||    
T  976267 aatattttacgcgacaaattcaaataaaacttaccattctctattttatttttttgaataatcgaaatccctattctctataaaacaaaaactacattta 976168  T
Q  115 atcataaatatgtcacaaaaaatcatcaccttgttattattattacttttaatttaaaatgtctcatattactgacgtacatgatcagaaaga-ttgcgg 213  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  976167 atcataaatatgtcacaaaaaatcgtcaccttgttattattattacttttaatttaaaatgtctcatattactgacgtatatgatcagaaagaattgcgg 976068  T
Q  214 tcaacaatgtagtttgaaaga--tcgaaaatcctactttattgacaaccctcactcatacttacctttgagagatttggcttgatatcattaacattact 311  Q
    ||||||||||||||| |||||  |||||| |||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||| |||||||    
T  976067 tcaacaatgtagtttaaaagacatcgaaagtcctactttattgacaaccccctctcatacttgcctttgagagatttggcttgatatcattagcattact 975968  T
Q  312 atataattacatagtggttaatggttatgccattgccgattctatagcttttagcattatccacaaccacattcatcaagctactttggatataatttca 411  Q
    |||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  975967 atataattacatagtggttaatggttatgcc------gattctatagcttttagcattatccacaaccacattcatcaagctactttggatataatttca 975874  T
Q  412 aacttggcaaaaataaactcaaaaatagaaattaaaagtgtttttatagcaatgttatcttctacggtcataaacatttcctttatttatactatgacac 511  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  975873 aacttggcaaaaataagctcaaaaatagaaattaaaagtgtttttatagcaatgttatcttctacggtcataaacatttcctttatttatactatgacac 975774  T
Q  512 aatgagccctaagatttaaatcactttagcggaaaggaagccatgtgtttggttacaatgaggcttatgcatttctcaagtcctacataaatcgtttatg 611  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  975773 aatgagccctaagatttaaatcactttagcggaaaggaagccatgtgtttggttacaatgaggcttatgcatttctcaagtcctacataaatcgtttatg 975674  T
Q  612 atctacaataacatcatttcattttcacctaacaaaaaa 650  Q
    |||||||||||||||||||||||||||||||||||||||    
T  975673 atctacaataacatcatttcattttcacctaacaaaaaa 975635  T

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