View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18589_high_5 (Length: 537)
Name: NF18589_high_5
Description: NF18589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18589_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-178; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 119 - 521
Target Start/End: Complemental strand, 50118146 - 50117749
Alignment:
| Q |
119 |
attatttgacaaaaaggacccattcgaaatatggcatgcagctgataatacatcaggatttaaactatcttctaatttctacattagactggtacaaaac |
218 |
Q |
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| T |
50118146 |
attatttgacaaaaaggatccattcgaaatatggcatgcagctgataatacatcaggatttaaactatcttctaatttctacattagactggtacaaa-c |
50118048 |
T |
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| Q |
219 |
agttataatgttacggtataaaattggctacaacttacggatacattaacttaacattaacatggagaagtcatttgcagataacattttcaaaaactca |
318 |
Q |
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| T |
50118047 |
agttataatgttacggtataaaattggctacaacttacggatacattaacttaacattaacatggagaagtcatttgcagataacattttcaaaaactca |
50117948 |
T |
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| Q |
319 |
taaccccacataa--------tattagcgcgtttcggtattgaaaccaacaaacaaaataagttttctggatcgacggataacatacctctttagggttg |
410 |
Q |
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| T |
50117947 |
taaccccacataacataatattagtagcgggtttcggtattgaaaccaacaaacaaaatcagttttctggatcgacggataacatacctctttagggt-- |
50117850 |
T |
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| Q |
411 |
aactcaaccctgaacgtacgccatctgagatgaattaaatccaggctttggctttcatcacccactcgagcaatccagtcaattttatctgcaaatagcc |
510 |
Q |
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| T |
50117849 |
----------tgaacgtacgccatctgagatgaattaaatccaggctttggctttcatcacccactcgagcaatccagtcaattttatctgcaaatagcc |
50117760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 11 - 120
Target Start/End: Complemental strand, 50120153 - 50120044
Alignment:
| Q |
11 |
cataggtgtaggctgccaaatcataattcaatcatgatattatcatctatcagacgtatctaaataaatgacgcgaaatatgaagggatattaatgttat |
110 |
Q |
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| T |
50120153 |
cataagtgtaggctgccaaatcataattcaatcatgatactatcatctatcagacgtatctaaataaatgacgcgaaatatgaagggatattaatgttat |
50120054 |
T |
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| Q |
111 |
agttcacaat |
120 |
Q |
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| T |
50120053 |
agtgcacaat |
50120044 |
T |
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