View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18589_high_7 (Length: 510)
Name: NF18589_high_7
Description: NF18589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18589_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 255 - 493
Target Start/End: Complemental strand, 35644912 - 35644675
Alignment:
| Q |
255 |
taacatttcccattaaaaaagtaatagaatatttttgatacacaccaaacccgaagcaatgaaaccgtgactgaaccacctaaacgcggcggggatatgc |
354 |
Q |
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| T |
35644912 |
taacatttcccataaaaaaa-tgatagaatatttttgatacacatcaaacccgaagcaatgaaaccgtgactgaaccacctaaacgcggcggggatatgc |
35644814 |
T |
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| Q |
355 |
tgagtacattaacgaaacggagcttttgcaccgtcgctcctcgcccttggcttttcgttggattgggtaaccccggcgacaaatacaaaggaactcgaca |
454 |
Q |
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| T |
35644813 |
tgagtacattaacgaaacggagcttttgcaccgtcgctcctcgcccttggcttttcgttggattgggtaaccccggcgacaaatacaaaggaactcgaca |
35644714 |
T |
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| Q |
455 |
caatgtacgagttagttagttagttttcgatcacggagg |
493 |
Q |
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| T |
35644713 |
caatgtacgagttagttagttagttttcgatcacggagg |
35644675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 40 - 159
Target Start/End: Complemental strand, 35645129 - 35645009
Alignment:
| Q |
40 |
aagttctacaaatattattttattagtgtaaatatcttaatgcaatnnnnnnn-ggtctggttaataagtgcaagtgcactcgtcaatgaactaaaaata |
138 |
Q |
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| T |
35645129 |
aagtactaaaaatattattttattagtgtaaatatcttaatgcaataaaaaaaaggtctggttaacaagtacaagtgcatttgttaacgaactaaaaata |
35645030 |
T |
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| Q |
139 |
gaaacaattaataatttttat |
159 |
Q |
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| T |
35645029 |
aaaacaattaataatttttat |
35645009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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