View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18589_low_1 (Length: 927)
Name: NF18589_low_1
Description: NF18589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18589_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 595; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 595; E-Value: 0
Query Start/End: Original strand, 4 - 700
Target Start/End: Original strand, 50654274 - 50654969
Alignment:
| Q |
4 |
gatggacatcatcacccttctaccccagtcnnnnnnngtataggatgagagaatggaataacataggttataaacttggtggcttctaaggtgagagagc |
103 |
Q |
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|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
50654274 |
gatgaacatcatcacccttctaccccagtcaaaaaaagtataggatgagagaatggaataacataggttataaacttggtggcaga-aaggtgagagagc |
50654372 |
T |
|
| Q |
104 |
catcaagttcctcaccagtgtactattggatctattaaaataattaaagggttcagatatattaaaaaattaagagtagcacataagtcttccctcaccc |
203 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50654373 |
catcaagttcctcaccagtgtaccattggatctattaaaataattaaagggttcagatatattaaaaaattaagagtagcacataagtcttccctcaccc |
50654472 |
T |
|
| Q |
204 |
aatccctccttgtttaactctttccctgctaaaccttccttgttatgatgtcttcaccttcaatttacgccactgacttatcttgttttctactcaagtg |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50654473 |
aatccctccttgtttaactctttccctgctaaaccttccttgttatgatgtcttcaccttcaatttacgccactgacttatcttgttttctactcaagtg |
50654572 |
T |
|
| Q |
304 |
taaaatcaattattgttcagcacaaccagaaaagttgcaacccatgataataataacatnnnnnnnggatagtccagtgcaccaaaactcccgcatatgc |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |
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| T |
50654573 |
taaaatcaattattgttcagcacaaccagaaaagttgcgacccatgataataataacataaaaaaaggatagtccagtgcaccaaaagtcccgcatatgc |
50654672 |
T |
|
| Q |
404 |
agggtccagggataacaataacatcaataataacaaataatgggtaaacaggaattcaagacaacaatttatgcaaccaaataaaatccaaaacctatag |
503 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
50654673 |
agggtccagggataacaataacatcagtaataacaaataatgggtgaacaggaattcacgacaacaatttatgcaaccaaataaaatccaaaacctatag |
50654772 |
T |
|
| Q |
504 |
ttcaacaaaaaccattaacccgaactaaggatctgttagtccacataaaattggaatctgtaattaagaagattgtatcatttgagagcaaaccaatcag |
603 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
50654773 |
ttcaacaaaaaccaataacccgaactaaggatctgttagtccacataaaattggaatctgtaattaagaagattgtatcatttgagagcaaaccaattag |
50654872 |
T |
|
| Q |
604 |
ttcaagtgaggaaacttatactatgctaaaaagactaatgaatgttacttatgaattgcaaaatgattcagtcactatgatattgattttccctcaa |
700 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50654873 |
ttcaagtgaggaaaattatactatgctaaaaagactaatgaatgttacttatgaattgcaaaatgattcagtcactatgatattgattttccctcaa |
50654969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 108; Significance: 9e-54; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 772 - 883
Target Start/End: Complemental strand, 39386092 - 39385981
Alignment:
| Q |
772 |
tctcacccctaatgatgcgtcaaaatatgtgttttaagtcgaacatttggtaggtgatgagaggtttgtttccatacgctagtggagaattacgaattgt |
871 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39386092 |
tctcacccctaatgatacgtcaaaatatgtgttttaagtcgaacatttggtaggtgatgagaggtttgtttccatacgctagtggagaattacgaattgt |
39385993 |
T |
|
| Q |
872 |
aacagaatatga |
883 |
Q |
| |
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|||||||||||| |
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| T |
39385992 |
aacagaatatga |
39385981 |
T |
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