View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18589_low_12 (Length: 497)
Name: NF18589_low_12
Description: NF18589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18589_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 384; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 16 - 463
Target Start/End: Complemental strand, 12844170 - 12843723
Alignment:
| Q |
16 |
cacttaccatgtctacattcatgaaagccaaatcaacttcgaagtcaccgttaccgccactgcttccgtcgtaacaaactggctccaaagtatgctcaat |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
12844170 |
cacttaccatgtctacattcatgaaagccaaatcaacttcgaagtcaccgttaccgccacagcttccgtcgtaacaaactggctccaaagtatgctcaat |
12844071 |
T |
|
| Q |
116 |
catcattttcaatccctccgccaccttcaataccttcgccgcaaccgtaatctccgtaaccgtaatctcgttgtcggccttggcgttcaatggactcccg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
12844070 |
catcattttcaatccctccgccaccttcaataccttcgccgcaaccgtaatctctgtaaccgtaatctcattgtcggccttggcgttcaatggactcccg |
12843971 |
T |
|
| Q |
216 |
gcaaccttgatcctcccgccgacacgctacagttatgcatcagtggcagctgtcttatcttccacctctctcgcgcagatatgattccggtcagtctctg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||| |
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| T |
12843970 |
gcaaccttgatcctcccgccgacacgctacagttatgcatcagtggcagctgtcttatcttccacctctctctcgccgatatgattccggttagtctctg |
12843871 |
T |
|
| Q |
316 |
caattttctccgtcatcctaagaacaccttcgttggattctggaacgctgcagatcgtaggaagctggagagatttgatcatcgcttgcaaatgtggaaa |
415 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
12843870 |
caactttctccgtcatcctaagaacaccttcgttggattctggaacgctgctgatcgtagaaggctggagagatttgatcatcgcttgcaaatgtggaaa |
12843771 |
T |
|
| Q |
416 |
aatcctcaggatctgaggaattacgagttcaatggtgaagctctttca |
463 |
Q |
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||||||||||||||||| ||||| ||||||||||||| ||||||| |
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| T |
12843770 |
gatcctcaggatctgaggcattacaggttcaatggtgaaaatctttca |
12843723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 167 - 485
Target Start/End: Original strand, 12861462 - 12861780
Alignment:
| Q |
167 |
ctccgtaaccgtaatctcgttgtcggccttggcgttcaatggactcccggcaaccttgatcctcccgccgacacgctacagttatgcatcagtggcagct |
266 |
Q |
| |
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||||| ||| ||||||| ||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
12861462 |
ctccgcaactgtaatcttgttgtcggcctcggcgttcaatggactaaccgcaaccttgatcctcccgccgacacgctacagttatgcatcggtggcagct |
12861561 |
T |
|
| Q |
267 |
gtcttatcttccacctctctcgcgcagatatgattccggtcagtctctgcaattttctccgtcatcctaagaacaccttcgttggattctggaacgctgc |
366 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12861562 |
gtcttatcttccacctctctcgcgcagatatgattccggtcagtctctgcaattttctccgtcatcctaagaacaccttcgttggattctggaacgctgc |
12861661 |
T |
|
| Q |
367 |
agatcgtaggaagctggagagatttgatcatcgcttgcaaatgtggaaaaatcctcaggatctgaggaattacgagttcaatggtgaagctctttcaagt |
466 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
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| T |
12861662 |
agatcgtaggaagctggagagatttgatcatcgcttgcaaatgtggaaaaatcctcaggatttgaggaattacgagttcaatggtgaagctctttcacgt |
12861761 |
T |
|
| Q |
467 |
ttatcgatggatgaaattg |
485 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
12861762 |
ttatcgatggatgaaattg |
12861780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 16 - 136
Target Start/End: Original strand, 12861347 - 12861467
Alignment:
| Q |
16 |
cacttaccatgtctacattcatgaaagccaaatcaacttcgaagtcaccgttaccgccactgcttccgtcgtaacaaactggctccaaagtatgctcaat |
115 |
Q |
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|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||| || |
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| T |
12861347 |
cacttaccatgtctacattcacgaaagccaaatcaacttcgaagtcaccgttaccgccactgcttccgttgtaacaaactggctccgtactatgctcgat |
12861446 |
T |
|
| Q |
116 |
catcattttcaatccctccgc |
136 |
Q |
| |
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||||| |||||| ||||||| |
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| T |
12861447 |
catcaccttcaatacctccgc |
12861467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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