View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18589_low_14 (Length: 495)
Name: NF18589_low_14
Description: NF18589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18589_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 437; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 1 - 479
Target Start/End: Original strand, 41764203 - 41764677
Alignment:
| Q |
1 |
ccaacaggaccaatgtatcacaaacctaacttatttcacaggtaaataatacacaacannnnnnnnnncttctatcctaaatattctacttacatttggt |
100 |
Q |
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| T |
41764203 |
ccaacaggaccaatgtatcacaaacctaacttatttcacaggtaaataatacacaacattttttt----ttctatcctaaatattctacttacatttggt |
41764298 |
T |
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| Q |
101 |
ttgtttgatataattcactgacctaattttgcaaaattttatttaacaggagttacttagaaatggagaaacggttcaaagtatttgtgtacgaagaagg |
200 |
Q |
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| T |
41764299 |
ttgtttgatataattcactgacctaattttgcaaaattttatttaacaggagttacttagaaatggagaaacggttcaaagtatttgtgtacgaagaagg |
41764398 |
T |
|
| Q |
201 |
ggagcctccagttttccatgatggaccttgcagagatatatactccatggaaggaattttcatcaatcaaatggagatgaatgataaattcataacaaga |
300 |
Q |
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| T |
41764399 |
ggagcctccagttttccatgatggaccttgcagagatatatactccatggaaggaattttcatcaatcaaatggagatgaatgataaattcataacaaaa |
41764498 |
T |
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| Q |
301 |
gaccctgagaaggcacatgtatttttcctttcttatagtgtagcaatgatggtccattatgtctatgtacgagactctcgtgcttatgacctcttaagga |
400 |
Q |
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| T |
41764499 |
gaccctgagaaggcacatgtatttttcctttcttatagtgtagcaatgatggtccattatgtctatgtacgagactctcgtgcttatgacctcttaagga |
41764598 |
T |
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| Q |
401 |
taaccgtcaaagactacatcaatgtcctttccgaaaaatatccctattggaaccgaagtcatggagctgatcatttcat |
479 |
Q |
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| T |
41764599 |
taaccgtcaaagactacatcaatgtcctttccgaaaaatatccctattggaaccgaagtcatggagctgatcatttcat |
41764677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 139 - 480
Target Start/End: Original strand, 41756395 - 41756736
Alignment:
| Q |
139 |
ttatttaacaggagttacttagaaatggagaaacggttcaaagtatttgtgtacgaagaaggggagcctccagttttccatgatggaccttgcagagata |
238 |
Q |
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|||| |||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||| | || |
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| T |
41756395 |
ttatataacaggagttatttagaaatggagaaacaattcaaagtatttgtgtatgaagaaggggagcctccggttttccataatggaccttgcaaaagta |
41756494 |
T |
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| Q |
239 |
tatactccatggaaggaattttcatcaatcaaatggagatgaatgataaattcataacaagagaccctgagaaggcacatgtatttttcctttcttatag |
338 |
Q |
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| T |
41756495 |
tatactccatggaaggaaatttcatccatgctattgagatgaatgatcgatttcgaacaagagaccccgagaaggcacatgtatttttccttccttttag |
41756594 |
T |
|
| Q |
339 |
tgtagcaatgatggtccattatgtctatgtacgagactctcgtgcttatgacctcttaaggataaccgtcaaagactacatcaatgtcctttccgaaaaa |
438 |
Q |
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| T |
41756595 |
tgtggcaaagatggtccaatttgtctatgtacgcgattctcatgattttagtcccataaggaaaaccatcacagattatatcaatgtggtttccgaaaaa |
41756694 |
T |
|
| Q |
439 |
tatccctattggaaccgaagtcatggagctgatcatttcatg |
480 |
Q |
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| T |
41756695 |
tatcccttttggaaccgaagccttggagctgatcatttcatg |
41756736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 41756245 - 41756292
Alignment:
| Q |
1 |
ccaacaggaccaatgtatcacaaacctaacttatttcacaggtaaata |
48 |
Q |
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||||||||||||||||||||||| ||||| | |||||||||||||||| |
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| T |
41756245 |
ccaacaggaccaatgtatcacaatcctaattcatttcacaggtaaata |
41756292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 146 - 254
Target Start/End: Complemental strand, 26974161 - 26974053
Alignment:
| Q |
146 |
acaggagttacttagaaatggagaaacggttcaaagtatttgtgtacgaagaaggggagcctccagttttccatgatggaccttgcagagatatatactc |
245 |
Q |
| |
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||||||| ||||||||||||||||||| |||||||||||| || |||||||||||||||||||| ||||| || |||||||||||| | |||||||| |
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| T |
26974161 |
acaggagctacttagaaatggagaaacagttcaaagtattcgtctacgaagaaggggagcctccggtttttcacaatggaccttgcaaaagcatatactc |
26974062 |
T |
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| Q |
246 |
catggaagg |
254 |
Q |
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||||||||| |
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| T |
26974061 |
catggaagg |
26974053 |
T |
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Back To:
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