View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18589_low_15 (Length: 474)
Name: NF18589_low_15
Description: NF18589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18589_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 364; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 76 - 459
Target Start/End: Complemental strand, 35449465 - 35449082
Alignment:
| Q |
76 |
attttgttttacagcaactgagaatccagcatgctattatgtgtctgtgcaacctgctgaaggtctgaacccaaaaaatatgcaacatgggtgggaatcc |
175 |
Q |
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| T |
35449465 |
attttgttttacagcaactgagaatccagcatgctattatgtgtctgtgcaacctgctgaaggtctgaacccaaaaaatatgcaacatgggtgggaatcc |
35449366 |
T |
|
| Q |
176 |
aatttatcttatgagttgaataatggtggatcattgtttggtatggttgacgtgtctgctcagggagattgttcaaacatgcattatagtcagaacacga |
275 |
Q |
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| T |
35449365 |
aatttatcttatgagttgaataatggtggatcatcgtttggtatggttgacgtgtctgctcaaggagattgttcaaccatgcattatagtcagaacacga |
35449266 |
T |
|
| Q |
276 |
acatgggctttcaacaaggaattaatgagggaacagccatatcagaacctgaatatccaagttcttctactcgcatgtttggtactgatgaaaatgtcct |
375 |
Q |
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| T |
35449265 |
acatgggctttcaacaaggaattaatgagggaatagccatatcagaacctgaatatccaagttcttctactcgcatgtttggtattgatgaaaatgtcct |
35449166 |
T |
|
| Q |
376 |
ggaggcctgcccaattgtcggcaatacatcagctacgccaatctttaataacggtactggatcaccatttcgtatggttgatat |
459 |
Q |
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| T |
35449165 |
ggaggcctgcccaattgtcggcaatacatcagctacgccaatctttaataacggtactggatcaccatttcgtatggttgatat |
35449082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 216 - 456
Target Start/End: Complemental strand, 35449094 - 35448857
Alignment:
| Q |
216 |
gtatggttgacgtgtctgctcagggagattgttcaaacatgcattatagtcagaacacgaacatgggctttcaacaaggaattaatgagggaacagccat |
315 |
Q |
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| T |
35449094 |
gtatggttgatatgtctgctcatggagatttttcaagcatgcattatagtcagaactcgaacatgggttttcaacaaggaattaatggggggatggccat |
35448995 |
T |
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| Q |
316 |
atcagaacctgaatatccaagttcttctactcgcatgtttggtactgatgaaaatgtcctggaggcctgcccaattgtcggcaatacatcagctacgcca |
415 |
Q |
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| T |
35448994 |
aacagaacctgaatatccaagttcttctcctagcatgtttggtgttgatgaaaatgtcatggagacctgcccaattgtcaggaatgcatcagctatgcca |
35448895 |
T |
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| Q |
416 |
atctttaataacggtactggatcaccatttcgtatggttga |
456 |
Q |
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|||| || ||| || ||||||| |||||| ||||||||| |
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| T |
35448894 |
atctatagtaatgg---tggatcatcatttcatatggttga |
35448857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 35449504 - 35449459
Alignment:
| Q |
10 |
attattctaaacttgatattgaaagctcaattgcaatctattttgt |
55 |
Q |
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| T |
35449504 |
attattctaaacttgatattgaaagctcaattgcaatctattttgt |
35449459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 84 - 365
Target Start/End: Complemental strand, 35441206 - 35440925
Alignment:
| Q |
84 |
ttacagcaactgagaatccagcatgctattatgtgtctgtgcaacctgctgaaggtctgaacccaaaaaatatgcaacatgggtgggaatccaatttatc |
183 |
Q |
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|||||| | ||||||||||||||| | | |||| ||||||||| || | ||||| ||||| |||||||| |||||||||| || ||||||||| || |
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| T |
35441206 |
ttacagtacctgagaatccagcatattctcatgtttctgtgcaaactccagaaggcttgaactcaaaaaatctgcaacatggtgtggtatccaatttttc |
35441107 |
T |
|
| Q |
184 |
ttatgagttgaataatggtggatcattgtttggtatggttgacgtgtctgctcagggagattgttcaaacatgcattatagtcagaacacgaacatgggc |
283 |
Q |
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| T |
35441106 |
tgatctgtttaataacaaaggatcatcatttggtatggttgatacgtctgctcatggagatattccaagcatgacttttactcagaactcaaacatgggt |
35441007 |
T |
|
| Q |
284 |
tttcaacaaggaattaatgagggaacagccatatcagaacctgaatatccaagttcttctactcgcatgtttggtactgatg |
365 |
Q |
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| ||||||||| |||||| ||||| ||||||| ||||||| || |||||| |||| ||| |||||||||| |||||| |
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| T |
35441006 |
atgcaacaaggagttaatgggggaatgaccatatccaaacctgataattcaagtttttctcctcacatgtttggtgctgatg |
35440925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 196 - 302
Target Start/End: Complemental strand, 35448886 - 35448780
Alignment:
| Q |
196 |
taatggtggatcattgtttggtatggttgacgtgtctgctcagggagattgttcaaacatgcattatagtcagaacacgaacatgggctttcaacaagga |
295 |
Q |
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|||||||||||||| ||| ||||||||| |||||||||| |||||| || || ||||||| ||||||||||| | ||||||| || || |||||| |
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| T |
35448886 |
taatggtggatcatcatttcatatggttgagatgtctgctcacggagatattttaagcatgcatcatagtcagaactcaaacatggatttgcagcaagga |
35448787 |
T |
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| Q |
296 |
attaatg |
302 |
Q |
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|||||| |
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| T |
35448786 |
gttaatg |
35448780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 1865115 - 1865175
Alignment:
| Q |
10 |
attattctaaacttgatattgaaagctcaattgcaatctattttgtattccagctctaaat |
70 |
Q |
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|||||||||| ||||||| |||| ||||||| |||||||||||| |||| ||||||||| |
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| T |
1865115 |
attattctaagtatgatattcaaagttcaattgtaatctattttgttttccggctctaaat |
1865175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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