View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18589_low_18 (Length: 428)
Name: NF18589_low_18
Description: NF18589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18589_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 4 - 342
Target Start/End: Original strand, 34592668 - 34593015
Alignment:
| Q |
4 |
agaaaataagaacactacaaaaccaggacagattaatcataagcttagtatatattagccacttnnnnnnnnnnnnnnnnncaatcctttatattaattg |
103 |
Q |
| |
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| T |
34592668 |
agaaaataagaacactacaaaaccaggacagattaatcataagcttagtatatattagccacttaaaaaatgaagaaaaaacaatcctttatattaattg |
34592767 |
T |
|
| Q |
104 |
cataacaataacaaacaatgcatatataatttcaacaaa---------taaggcaaatgtagggtttaacagtgaaattgaaattgtaaagttcatcaat |
194 |
Q |
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| T |
34592768 |
cataacaataacaaacaatgcatatataatttcaacaaactaagcaaataaggcaaatgtagggtttaacagtgaaattgaaattgtaaagttcatcaat |
34592867 |
T |
|
| Q |
195 |
tgattcaattcaaccaatcaattagctatttttaaccatatgnnnnnnnnnnnnnnnnncagattaggattgattcattaatctagggtttagttaaaat |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
34592868 |
tgattcaattcaaccaatcaattagctatttttaaccatatgaaataaaaattaaaaaacagattaggattgattcattaatctagggtttagttaaaat |
34592967 |
T |
|
| Q |
295 |
caaattgggaaaaattgaaaagggtaatgggaagaagagaacaaacca |
342 |
Q |
| |
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| T |
34592968 |
caaattgggaaaaattgaaaagggtaatgggaagaagagaacaaacca |
34593015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 141 - 342
Target Start/End: Complemental strand, 28466793 - 28466585
Alignment:
| Q |
141 |
aataaggcaaatgtagggtttaacagtgaaattgaaattgtaaagttcatcaattgattcaattcaaccaatcaattagctatttttaaccat-----at |
235 |
Q |
| |
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| T |
28466793 |
aataaggcaaatgtagggattaacactgaaattgaaattgtaaagttcatcaattgattcaattcaaccaatcaattagctattttaaaccatatcacat |
28466694 |
T |
|
| Q |
236 |
gnnnnnnnnnnnnnnnnncagattaggattgattcattaatctagggtttagtt-aaaatcaaattgggaaaaattgaaaaggg-taatgggaagaagag |
333 |
Q |
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| T |
28466693 |
gaaataaaaatttaaaaacagattaggatttattcattaatctagggttttgttaaaaataagatttggaaaaattgaaaagggttaatgggaagaagag |
28466594 |
T |
|
| Q |
334 |
aacaaacca |
342 |
Q |
| |
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|||| |||| |
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| T |
28466593 |
aacatacca |
28466585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 141 - 342
Target Start/End: Original strand, 34736940 - 34737148
Alignment:
| Q |
141 |
aataaggcaaatgtagggtttaacagtgaaattgaaattgtaaagttcatcaattgattcaattcaaccaatcaattagctatttttaaccat-----at |
235 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |
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| T |
34736940 |
aataaggcaaatgtagggattaacactgaaattgaaattgtaaagttcatcaattgattcaattcaaccaatcaattagctattttaaaccatatcacat |
34737039 |
T |
|
| Q |
236 |
gnnnnnnnnnnnnnnnnncagattaggattgattcattaatctagggtttagtt-aaaatcaaattgggaaaaattgaaaaggg-taatgggaagaagag |
333 |
Q |
| |
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| |||||||||||| ||||||||||||||||||| ||| ||||| | ||| ||||||||||||||||| ||||||||||||||| |
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| T |
34737040 |
gaaataaaaatttaaaaacagattaggatttattcattaatctagggttttgttaaaaataagatttggaaaaattgaaaagggttaatgggaagaagag |
34737139 |
T |
|
| Q |
334 |
aacaaacca |
342 |
Q |
| |
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|||| |||| |
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|
| T |
34737140 |
aacatacca |
34737148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 135 - 342
Target Start/End: Original strand, 34621248 - 34621461
Alignment:
| Q |
135 |
tcaacaaataaggcaaatgtagggtttaacagtgaaattgaaattgtaaagttcatcaattgattcaattcaaccaatcaattagctatttttaaccat- |
233 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||| |||||| |
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| T |
34621248 |
tcaacaaataagacaaatgcagggtttaacagtaaaattgaaattgtaaggttcatcaatagattcaattcaaccaatcaataagctattttaaaccata |
34621347 |
T |
|
| Q |
234 |
-----atgnnnnnnnnnnnnnnnnncagattaggattgattcattaatctagggtttagttaaaatcaaattgggaaaaattgaaaagggtaatgggaag |
328 |
Q |
| |
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||| ||||||||| |||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||| |
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| T |
34621348 |
gtcacatgaaataaaaattaaaaaacagattagggttgatttattaatctagggttttgttaaaagaaaattgggaaaaattgaaaagggtaattggaag |
34621447 |
T |
|
| Q |
329 |
aagagaacaaacca |
342 |
Q |
| |
|
||||||||| |||| |
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| T |
34621448 |
aagagaacatacca |
34621461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 135 - 342
Target Start/End: Original strand, 34748685 - 34748898
Alignment:
| Q |
135 |
tcaacaaataaggcaaatgtagggtttaacagtgaaattgaaattgtaaagttcatcaattgattcaattcaaccaatcaattagctatttttaaccat- |
233 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||| |||||| |
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| T |
34748685 |
tcaacaaataagacaaatgcagggtttaacagtaaaattgaaattgtaaggttcatcaatagattcaattcaaccaatcaataagctattttaaaccata |
34748784 |
T |
|
| Q |
234 |
-----atgnnnnnnnnnnnnnnnnncagattaggattgattcattaatctagggtttagttaaaatcaaattgggaaaaattgaaaagggtaatgggaag |
328 |
Q |
| |
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||| ||||||||| |||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||| |
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| T |
34748785 |
gtcacatgaaataaaaattaaaaaacagattagggttgatttattaatctagggttttgttaaaagaaaattgggaaaaattgaaaagggtaattggaag |
34748884 |
T |
|
| Q |
329 |
aagagaacaaacca |
342 |
Q |
| |
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||||||||| |||| |
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| T |
34748885 |
aagagaacatacca |
34748898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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