View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18589_low_20 (Length: 391)
Name: NF18589_low_20
Description: NF18589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18589_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 13 - 373
Target Start/End: Complemental strand, 21431759 - 21431382
Alignment:
| Q |
13 |
aatatgagacaaataaatattacaaatgagtaacttaatatttaatactctcttttttataaaagacatgtcaacaaaagttgatgcatttggtttatat |
112 |
Q |
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| T |
21431759 |
aatatgagacaaataaatattacaaatgagtaacttaatatttagtactctcttttttataaaagacatgtcaacaaaaattgatgaatttggtttatat |
21431660 |
T |
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| Q |
113 |
aatggaccaaatatatctacttttttactcatatatctcttat-----------------taggtctaaatgcaagtaagtgctctctatctttactaat |
195 |
Q |
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| T |
21431659 |
aagggaccaaatatatctacttttttactcatatatctcttatggagaggcactataatttaggtctaaatgcaagtaagtgctctctatctttactaat |
21431560 |
T |
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| Q |
196 |
tgtcttgaaattaaagtccacaaaacaaaataatgtggtttcacaccgatgatgtgagagaaaaagaatataagtgggcatagttgcatgcaatgtaaat |
295 |
Q |
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| T |
21431559 |
tgtcttgaaattaaagtccacaaaacaaaataatgtggtttcacaccgatgatgtgagagaaaaagaatatcagtgggcatagttgcatgcaatgtaaat |
21431460 |
T |
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| Q |
296 |
gtatgatgagtcttgtttacaaggtacgaaaaaatagggcaaagtttctttttgggtcggatggtggggggccgtggg |
373 |
Q |
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| T |
21431459 |
gtatgatgagtcttgtttacaaggtacgaaaaaatagggcaaagtttctttttgggtcggatggtggggggccgtggg |
21431382 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 136
Target Start/End: Complemental strand, 40714037 - 40713983
Alignment:
| Q |
82 |
gtcaacaaaagttgatgcatttggtttatataatggaccaaatatatctactttt |
136 |
Q |
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| T |
40714037 |
gtcaacaaaagttgatgtatttggttcataatatggaccaaatacatcgactttt |
40713983 |
T |
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