View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18589_low_23 (Length: 362)

Name: NF18589_low_23
Description: NF18589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18589_low_23
NF18589_low_23
[»] chr2 (11 HSPs)
chr2 (1-338)||(32813971-32814308)
chr2 (1-345)||(32310173-32310512)
chr2 (1-345)||(32564308-32564647)
chr2 (4-339)||(32786766-32787096)
chr2 (1-345)||(32306040-32306379)
chr2 (1-255)||(28214324-28214578)
chr2 (1-255)||(28221706-28221960)
chr2 (94-210)||(32316568-32316684)
chr2 (57-190)||(28174569-28174703)
chr2 (1-104)||(32317376-32317479)
chr2 (57-162)||(28171391-28171496)


Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 32813971 - 32814308
Alignment:
Q  1 tggctttgaaactgtaaacgtcgaaaacgtgccattgctgctgatattgttcttactgttgtcaggacagtttagcctcatctgactgagaaaatcgaga 100  Q
    |||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32813971 tggctttgaagctgtaaacgtcgaaaacgtgccgttgctgctgaaattgttcttactgttgtcaggacagtttagcctcatctgactgagaaaatcgaga 32814070  T
Q  101 ggtatacttgggtctggttgccctgttccttgaaagtcgtacagcctttgctgaatgaaatcgcaaccaatttttccaatgttgtgtcctcctttagatt 200  Q
    |||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||    
T  32814071 ggtatactcggatctggttgccctgttccttgaaagtcgtacaacctttgctgaatgaaatcgcaaccgatttttccaatgttgtgtcctcctttaaatt 32814170  T
Q  201 atcaagaaaccaacagatatcattagtcaaattcaaggttttaaaaaatgtgtgagatcgcaatctcaattacgatacaacatcagggttttttatgtct 300  Q
    |||||||||||||||||| ||||||| |  || |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||    
T  32814171 atcaagaaaccaacagatctcattagccttatacaaggttttaaaaaatgtgtgagatcacaatctcaattacgatacgacatcagggtttttgatgtct 32814270  T
Q  301 ttgcgaccacaattgaggctgcatcaggctcaacagtt 338  Q
    ||| ||||||| ||||||||||||||||||||||||||    
T  32814271 ttgtgaccacagttgaggctgcatcaggctcaacagtt 32814308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 32310512 - 32310173
Alignment:
Q  1 tggctttgaaactgtaaacgtcgaaaacgtgccattgctgctgatattgttcttactgttgtcaggacagtttagcctcatctgactgagaaaatcgaga 100  Q
    |||||||||| ||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32310512 tggctttgaagctgtaaacgacgaaaacgtgccgttgctgctgaaattgttcttactgttgtcaggacagtttagcctcatctgactgagaaaatcgaga 32310413  T
Q  101 ggtatacttgggtctggttgccctgttccttgaaagtcgtacagcctttgctgaatgaaatcgcaaccaatttttccaatgttgtgtcctcctttagatt 200  Q
    |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  32310412 ggtatactcggatctggttgccctgttccttgaaagtcgtacagcctttgctgaatgaaatcgcaaccgatttttccaatgttgtgtcctcctttagatt 32310313  T
Q  201 atcaagaaaccaacagatatcattagtcaaattcaaggttttaaaaaatgtgtgagatcgcaatctcaattacgatacaacatcagggttttttatgtct 300  Q
    |||||||||||||||||| ||||||| |  ||||||||||||||||||||||||| ||| ||||||||     | ||| |||||| ||||||| ||||||    
T  32310312 atcaagaaaccaacagatctcattagccttattcaaggttttaaaaaatgtgtgatatcacaatctca-----gctacgacatcaaggtttttcatgtct 32310218  T
Q  301 ttgcgaccacaattgaggctgcatcaggctcaacagttcgcaatg 345  Q
    ||| ||||||| |||||||||||||||||||||||||||||||||    
T  32310217 ttgtgaccacagttgaggctgcatcaggctcaacagttcgcaatg 32310173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 32564308 - 32564647
Alignment:
Q  1 tggctttgaaactgtaaacgtcgaaaacgtgccattgctgctgatattgttcttactgttgtcaggacagtttagcctcatctgactgagaaaatcgaga 100  Q
    |||||||||| ||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32564308 tggctttgaagctgtaaacgacgaaaacgtgccgttgctgctgaaattgttcttactgttgtcaggacagtttagcctcatctgactgagaaaatcgaga 32564407  T
Q  101 ggtatacttgggtctggttgccctgttccttgaaagtcgtacagcctttgctgaatgaaatcgcaaccaatttttccaatgttgtgtcctcctttagatt 200  Q
    |||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  32564408 ggtatactcggatctggttgccctgttccttgaaagtcgtacaacctttgctgaatgaaatcgcaaccgatttttccaatgttgtgtcctcctttagatt 32564507  T
Q  201 atcaagaaaccaacagatatcattagtcaaattcaaggttttaaaaaatgtgtgagatcgcaatctcaattacgatacaacatcagggttttttatgtct 300  Q
    |||||||||||||||||| ||||||| |  ||||||||||||||||||||||||| ||| ||||||||     | ||| |||||| ||||||| ||||||    
T  32564508 atcaagaaaccaacagatctcattagccttattcaaggttttaaaaaatgtgtgatatcacaatctca-----gctacgacatcaaggtttttcatgtct 32564602  T
Q  301 ttgcgaccacaattgaggctgcatcaggctcaacagttcgcaatg 345  Q
    ||| ||||||| |||||||||||||||||||||||||||||||||    
T  32564603 ttgtgaccacagttgaggctgcatcaggctcaacagttcgcaatg 32564647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 4 - 339
Target Start/End: Original strand, 32786766 - 32787096
Alignment:
Q  4 ctttgaaactgtaaacgtcgaaaacgtgccattgctgctgatattgttcttactgttgtcaggacagtttagcctcatctgactgagaaaatcgagaggt 103  Q
    |||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32786766 ctttgaaattgtaaacgtcgaaaacgtgccgttgctgctgatattattcttactgttgtcaggacagtttagcctcatctgactgagaaaatcgagaggt 32786865  T
Q  104 atacttgggtctggttgccctgttccttgaaagtcgtacagcctttgctgaatgaaatcgcaaccaatttttccaatgttgtgtcctcctttagattatc 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||| |||||    
T  32786866 atacttgggtctggttgccctgttccttgaaagtcgtacagcctttgctgaaagaaatcgcaaccgatttttccaatgttgtgtcctcctgtagtttatc 32786965  T
Q  204 aagaaaccaacagatatcattagtcaaattcaaggttttaaaaaatgtgtgagatcgcaatctcaattacgatacaacatcagggttttttatgtctttg 303  Q
    ||||||||||||||| ||||||| |  ||||||||||||||||||| |||| |||| ||||||||     | ||| |||||||||||||| |||||||||    
T  32786966 aagaaaccaacagatctcattagccttattcaaggttttaaaaaatatgtgggatcacaatctca-----gctacgacatcagggtttttgatgtctttg 32787060  T
Q  304 cgaccacaattgaggctgcatcaggctcaacagttc 339  Q
     ||||||| ||||||||| |||||||||||||||||    
T  32787061 tgaccacagttgaggctggatcaggctcaacagttc 32787096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 32306379 - 32306040
Alignment:
Q  1 tggctttgaaactgtaaacgtcgaaaacgtgccattgctgctgatattgttcttactgttgtcaggacagtttagcctcatctgactgagaaaatcgaga 100  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||| |||||| |||||| ||||||||||    
T  32306379 tggctttgaaactgtaaacgtcgaaaacgtgccgttgctgttgatattgttcttactgtagtcaggacagtttagtctcatcagactgaaaaaatcgaga 32306280  T
Q  101 ggtatacttgggtctggttgccctgttccttgaaagtcgtacagcctttgctgaatgaaatcgcaaccaatttttccaatgttgtgtcctcctttagatt 200  Q
    |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||||| ||||||||||||| || |||    
T  32306279 ggtatactcgggtctggttgccctgttccttgaaagtcgtacaacctttgctgaatgaaatcacaaccgatttttccaaggttgtgtcctcctgtatatt 32306180  T
Q  201 atcaagaaaccaacagatatcattagtcaaattcaaggttttaaaaaatgtgtgagatcgcaatctcaattacgatacaacatcagggttttttatgtct 300  Q
    ||| |||||||||||||| ||||||  |  ||||||||||| ||||| |  |||||||| ||||||||     | ||| |||||||||||||| ||||||    
T  32306179 atccagaaaccaacagatctcattaaccctattcaaggtttgaaaaattacgtgagatcacaatctca-----gctacgacatcagggtttttgatgtct 32306085  T
Q  301 ttgcgaccacaattgaggctgcatcaggctcaacagttcgcaatg 345  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  32306084 ttgcgaccacaattgaggctgcatcaggctcaacagttcgcaatg 32306040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 28214324 - 28214578
Alignment:
Q  1 tggctttgaaactgtaaacgtcgaaaacgtgccattgctgctgatattgttcttactgttgtcaggacagtttagcctcatctgactgagaaaatcgaga 100  Q
    |||||||||||||||||||||||||||| | || |||||||||| ||| |||||| ||||||||||||||||| ||||||||||||| || |||||||||    
T  28214324 tggctttgaaactgtaaacgtcgaaaacattccgttgctgctgacattattcttattgttgtcaggacagttttgcctcatctgactaaggaaatcgaga 28214423  T
Q  101 ggtatacttgggtctggttgccctgttccttgaaagtcgtacagcctttgctgaatgaaatcgcaaccaatttttccaatgttgtgtcctcctttagatt 200  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||    
T  28214424 ggtatactcgggtctggttgccctgttccttgaaagtcgtacagcctttgctgaatgaaatcgcaaccgatttttccaatgttgtgttctcctttagatt 28214523  T
Q  201 atcaagaaaccaacagatatcattagtcaaattcaaggttttaaaaaatgtgtga 255  Q
    |||||||||||||||||| |||||||||| ||||||||||||| |||| ||||||    
T  28214524 atcaagaaaccaacagatctcattagtcatattcaaggttttataaaaagtgtga 28214578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 28221960 - 28221706
Alignment:
Q  1 tggctttgaaactgtaaacgtcgaaaacgtgccattgctgctgatattgttcttactgttgtcaggacagtttagcctcatctgactgagaaaatcgaga 100  Q
    |||||||||||||||||||||||||||| | || |||||| ||| ||| |||||| ||||||||||||||||| |||||||||||||||| |||||||||    
T  28221960 tggctttgaaactgtaaacgtcgaaaacattccgttgctgatgacattattcttattgttgtcaggacagttttgcctcatctgactgaggaaatcgaga 28221861  T
Q  101 ggtatacttgggtctggttgccctgttccttgaaagtcgtacagcctttgctgaatgaaatcgcaaccaatttttccaatgttgtgtcctcctttagatt 200  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||||| | |||| |||||    
T  28221860 ggtatactcgggtctggttgccctgttccttgaaagtcgtagagcctttgctgaatgaaatcgcaacagatttttccaatgttgtgtgcaccttcagatt 28221761  T
Q  201 atcaagaaaccaacagatatcattagtcaaattcaaggttttaaaaaatgtgtga 255  Q
    |||||||||||||||||| |||||||||| ||||||||||||| |||| ||||||    
T  28221760 atcaagaaaccaacagatctcattagtcatattcaaggttttataaaaagtgtga 28221706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 94 - 210
Target Start/End: Complemental strand, 32316684 - 32316568
Alignment:
Q  94 atcgagaggtatacttgggtctggttgccctgttccttgaaagtcgtacagcctttgctgaatgaaatcgcaaccaatttttccaatgttgtgtcctcct 193  Q
    ||||||||||||| | | |||| |||| | |||||||| ||||||||||| |||||||| ||||||||||||||| |||||| |||||||||||||||||    
T  32316684 atcgagaggtatattcgagtctagttgtcatgttcctttaaagtcgtacaacctttgctaaatgaaatcgcaaccgattttttcaatgttgtgtcctcct 32316585  T
Q  194 ttagattatcaagaaac 210  Q
    ||| |||||||||||||    
T  32316584 ttatattatcaagaaac 32316568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 57 - 190
Target Start/End: Complemental strand, 28174703 - 28174569
Alignment:
Q  57 tgttgtcaggacagtttagcctcatctgactgagaaaatcgagaggtatac-ttgggtctggttgccctgttccttgaaagtcgtacagcctttgctgaa 155  Q
    ||||||| ||||||||||||||||||||||| |||||||| |||| |||||    ||||||||||| ||||||||| ||||| |||||| |||||   ||    
T  28174703 tgttgtctggacagtttagcctcatctgactaagaaaatcaagagctatacgacaggtctggttgcgctgttcctttaaagttgtacagactttgtcaaa 28174604  T
Q  156 tgaaatcgcaaccaatttttccaatgttgtgtcct 190  Q
    | ||||| ||||  ||||| |||||||||||||||    
T  28174603 tcaaatcacaactgattttgccaatgttgtgtcct 28174569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 32317479 - 32317376
Alignment:
Q  1 tggctttgaaactgtaaacgtcgaaaacgtgccattgctgctgatattgttcttactgttgtcaggacagtttagcctcatctgactgagaaaatcgaga 100  Q
    ||||||||||||| ||| ||||||||| || |  ||| |||||||||| |||| | ||||||||||||| ||| ||||||| ||||| ||||||||||||    
T  32317479 tggctttgaaactataaccgtcgaaaatgtactgttgttgctgatattattctaattgttgtcaggacaattttgcctcatatgacttagaaaatcgaga 32317380  T
Q  101 ggta 104  Q
    ||||    
T  32317379 ggta 32317376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 162
Target Start/End: Complemental strand, 28171496 - 28171391
Alignment:
Q  57 tgttgtcaggacagtttagcctcatctgactgagaaaatcgagaggtatacttgggtctggttgccctgttccttgaaagtcgtacagcctttgctgaat 156  Q
    |||||||  |||||||| ||||||||| ||| || ||||| ||| |||||||  ||||||||||| ||||||||||||||  |||||| ||| |  ||||    
T  28171496 tgttgtcttgacagttttgcctcatcttactaagcaaatcaagaagtatactcaggtctggttgcgctgttccttgaaagatgtacagtcttcgtcgaat 28171397  T
Q  157 gaaatc 162  Q
    ||||||    
T  28171396 gaaatc 28171391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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