View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18589_low_24 (Length: 358)
Name: NF18589_low_24
Description: NF18589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18589_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 121; Significance: 6e-62; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 160 - 284
Target Start/End: Complemental strand, 39922591 - 39922467
Alignment:
| Q |
160 |
ttgtgaattgatttttatcatttatatttgcatagttcacaattgtatcaaatttactagagtagaacctagaaaatgtggtttctaaatgaatgtacat |
259 |
Q |
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| T |
39922591 |
ttgtgaattgatttttatcatttatatttgcatagtacacaattgtatcaaatttactagagtagaacctagaaaatgtggtttctaaatgaatgtacat |
39922492 |
T |
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| Q |
260 |
cgagacacgataataaagtgttgta |
284 |
Q |
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| T |
39922491 |
cgagacacgataataaagtgttgta |
39922467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 13 - 106
Target Start/End: Complemental strand, 39922684 - 39922591
Alignment:
| Q |
13 |
aatatcgaaccgttaaatggaatatcaattttctggagagattagtttctgctcatgcgtgtataacagacagtataagataccttaatttact |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39922684 |
aatatcgaaccgttaaatggaatatcaattttctggagagattagtttctgctcatgcgtgtataacagacagtataagataccttaatttact |
39922591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 280 - 343
Target Start/End: Complemental strand, 39922419 - 39922356
Alignment:
| Q |
280 |
ttgtagtaatggtaatcgtgctcctgttaataatcatatcaatgatcaattgatcatgcttctg |
343 |
Q |
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| T |
39922419 |
ttgtagtaatggtaatcgtgctcctgttaataatcatatcaatgatcaattgatcatgcttctg |
39922356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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