View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18589_low_27 (Length: 341)

Name: NF18589_low_27
Description: NF18589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18589_low_27
NF18589_low_27
[»] chr2 (58 HSPs)
chr2 (16-329)||(39458447-39458760)
chr2 (22-193)||(39390455-39390626)
chr2 (16-169)||(39458775-39458928)
chr2 (23-182)||(39603204-39603363)
chr2 (13-141)||(39222394-39222522)
chr2 (23-193)||(39390246-39390416)
chr2 (164-265)||(39473988-39474089)
chr2 (33-183)||(39602993-39603143)
chr2 (159-265)||(39136541-39136647)
chr2 (83-227)||(39415111-39415255)
chr2 (41-169)||(39473823-39473951)
chr2 (168-265)||(39152158-39152255)
chr2 (168-265)||(39416084-39416181)
chr2 (164-220)||(39390639-39390695)
chr2 (168-224)||(39422204-39422260)
chr2 (71-179)||(39451757-39451865)
chr2 (21-112)||(39137399-39137490)
chr2 (116-213)||(39192970-39193067)
chr2 (116-213)||(39198650-39198747)
chr2 (90-203)||(39221870-39221983)
chr2 (90-203)||(39222080-39222193)
chr2 (254-307)||(39390633-39390686)
chr2 (273-326)||(39474055-39474108)
chr2 (13-57)||(39152240-39152284)
chr2 (90-189)||(39222556-39222655)
chr2 (21-140)||(39389614-39389733)
chr2 (23-70)||(39390918-39390965)
chr2 (69-183)||(39192545-39192659)
chr2 (23-77)||(39192751-39192805)
chr2 (69-183)||(39198225-39198339)
chr2 (23-77)||(39198431-39198485)
chr2 (21-71)||(39221309-39221359)
chr2 (134-212)||(39389937-39390015)
chr2 (168-233)||(38792654-38792719)
chr2 (116-193)||(39390129-39390206)
chr2 (164-265)||(39487902-39488003)
chr2 (27-71)||(39136777-39136821)
chr2 (164-212)||(39415576-39415624)
chr2 (165-213)||(39467650-39467698)
chr2 (169-208)||(38792931-38792970)
chr2 (273-324)||(39152141-39152192)
chr2 (90-169)||(39415712-39415791)
chr2 (273-316)||(39416147-39416190)
chr2 (273-327)||(38792342-38792395)
chr2 (245-307)||(39222765-39222827)
chr2 (21-71)||(39415895-39415945)
chr2 (21-55)||(39422183-39422217)
chr2 (273-326)||(39136522-39136575)
chr2 (164-213)||(39161624-39161673)
chr2 (164-213)||(39207521-39207570)
chr2 (164-213)||(39389400-39389449)
chr2 (245-282)||(39390708-39390745)
chr2 (94-139)||(44895653-44895698)
chr2 (245-305)||(39215514-39215574)
chr2 (164-208)||(39389799-39389843)
chr2 (245-281)||(39390792-39390828)
chr2 (165-213)||(39398533-39398581)
chr2 (164-204)||(39415108-39415148)
[»] chr5 (5 HSPs)
chr5 (172-326)||(17059082-17059224)
chr5 (40-142)||(17059296-17059398)
chr5 (164-213)||(33560745-33560794)
chr5 (19-70)||(33560468-33560519)
chr5 (244-280)||(33560228-33560264)
[»] chr7 (4 HSPs)
chr7 (159-265)||(19806902-19807008)
chr7 (21-189)||(19807272-19807440)
chr7 (273-329)||(19806880-19806936)
chr7 (27-71)||(19807138-19807182)


Alignment Details
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 58)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 16 - 329
Target Start/End: Complemental strand, 39458760 - 39458447
Alignment:
Q  16 ctcgaccatcaagttgcttctctttagactcaagttccttaacttgtcctttcaattgcctctgttgtgattcgaactcctccacttggctttcaaaact 115  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  39458760 ctcggccatcaagttgcttctctttagactcaagttccttaacttgtcctttcaattgcctctgttgtgatacgaactcctccacttggctttcaaaact 39458661  T
Q  116 cttcttttcagattccagctccttcacctgctcttcaaaatctctcttttttgactcaagctccttcattcggctttcgaaatgcttctgttttgatatc 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39458660 cttcttttcagattccagctccttcacctgctcttcaaaatctctcttttttgactcaagctccttcattcggctttcgaaatgcttctgttttgatatc 39458561  T
Q  216 aaatcattcactagctccttcgcctggatttcaaattccttctcttttgattcaaaatccttcacttgtctttcaaaatgcttctgttttgaaatgttat 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39458560 aaatcattcactagctccttcgcctggatttcaaattccttctcttttgattcaaaatccttcacttgtctttcaaaatgcttctgttttgaaatgttat 39458461  T
Q  316 ccttgacttgatga 329  Q
    ||||||||||||||    
T  39458460 ccttgacttgatga 39458447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 22 - 193
Target Start/End: Original strand, 39390455 - 39390626
Alignment:
Q  22 catcaagttgcttctctttagactcaagttccttaacttgtcctttcaattgcctctgttgtgattcgaactcctccacttggctttcaaaactcttctt 121  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || || || || ||||||||||||||||||||||  |||| |    
T  39390455 catcaaattgcttctctttagactcaagttccttaacttgtcctttcaattgcctctcttctgttttgagctcctccacttggctttcaaaatgcttcct 39390554  T
Q  122 ttcagattccagctccttcacctgctcttcaaaatctctcttttttgactcaagctccttcattcggctttc 193  Q
    || ||||||||| |||||||  ||  ||||||| ||||||| |||||| ||| ||||||||| |||||||||    
T  39390555 tttagattccagttccttcatttggccttcaaattctctctcttttgattcatgctccttcactcggctttc 39390626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 16 - 169
Target Start/End: Complemental strand, 39458928 - 39458775
Alignment:
Q  16 ctcgaccatcaagttgcttctctttagactcaagttccttaacttgtcctttcaattgcctctgttgtgattcgaactcctccacttggctttcaaaact 115  Q
    |||||||||||| || |||||||||| ||||||||||||||||||||||||||||||| |||| || ||||| || |||||||||||| ||||||||||     
T  39458928 ctcgaccatcaattttcttctctttacactcaagttccttaacttgtcctttcaattgtctctcttttgatttgagctcctccacttgactttcaaaaca 39458829  T
Q  116 cttcttttcagattccagctccttcacctgctcttcaaaatctctcttttttga 169  Q
     ||||||| |||||| ||||||||||| ||  |||| || ||||||||||||||    
T  39458828 attctttttagattcgagctccttcacatggccttcgaattctctcttttttga 39458775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 23 - 182
Target Start/End: Complemental strand, 39603363 - 39603204
Alignment:
Q  23 atcaagttgcttctctttagactcaagttccttaacttgtcctttcaattgcctctgttgtgattcgaactcctccacttggctttcaaaactcttcttt 122  Q
    ||||| ||||||||||||  ||||||||||||||||||||||||||||||||| | ||| ||||  |||||||||||||||||||||||||  |||||||    
T  39603363 atcaaattgcttctctttgtactcaagttccttaacttgtcctttcaattgccacagttttgatgtgaactcctccacttggctttcaaaatgcttcttt 39603264  T
Q  123 tcagattccagctccttcacctgctcttcaaaatctctcttttttgactcaagctccttc 182  Q
    | |||||||||||||||| | ||   |||||| ||||||| |||||| ||| ||||||||    
T  39603263 ttagattccagctccttcgcttgaatttcaaattctctctcttttgattcatgctccttc 39603204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 13 - 141
Target Start/End: Complemental strand, 39222522 - 39222394
Alignment:
Q  13 tcactcgaccatcaagttgcttctctttagactcaagttccttaacttgtcctttcaattgcctctgttgtgattcgaactcctccacttggctttcaaa 112  Q
    ||||||| ||||||| || ||||||||||||||||| ||||||||| ||||||||||||||||||| || ||||| |||||||||||||||  |||||||    
T  39222522 tcactcggccatcaaatttcttctctttagactcaatttccttaacctgtcctttcaattgcctctcttttgatttgaactcctccacttgattttcaaa 39222423  T
Q  113 actcttcttttcagattccagctccttca 141  Q
    |  ||||||||  |||||||| |||||||    
T  39222422 atgcttctttttggattccagttccttca 39222394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 23 - 193
Target Start/End: Original strand, 39390246 - 39390416
Alignment:
Q  23 atcaagttgcttctctttagactcaagttccttaacttgtcctttcaattgcctctgttgtgattcgaactcctccacttggctttcaaaactcttcttt 122  Q
    ||||| |||| ||||| ||||||||||||||||||||| ||||||||||||| ||  || || || || ||||||||||||||||||||||  |||| ||    
T  39390246 atcaaattgcatctctctagactcaagttccttaacttctcctttcaattgcttcacttttgttttgagctcctccacttggctttcaaaatgcttcctt 39390345  T
Q  123 tcagattccagctccttcacctgctcttcaaaatctctcttttttgactcaagctccttcattcggctttc 193  Q
    | ||||||||| |||||||  ||  ||||||| ||||||| ||||||  || ||||||||| |||||||||    
T  39390346 ttagattccagttccttcatttggccttcaaattctctctcttttgatccatgctccttcactcggctttc 39390416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 164 - 265
Target Start/End: Original strand, 39473988 - 39474089
Alignment:
Q  164 ttttgactcaagctccttcattcggctttcgaaatgcttctgttttgatatcaaatcattcactagctccttcgcctggatttcaaattccttctctttt 263  Q
    |||||||| ||||| || ||| |||||||| ||||||||||||||||||| |||||||||||||||||||||| | ||| ||||||||||||||| ||||    
T  39473988 ttttgacttaagcttctccatgcggctttcaaaatgcttctgttttgataccaaatcattcactagctccttcacttggctttcaaattccttctgtttt 39474087  T
Q  264 ga 265  Q
    ||    
T  39474088 ga 39474089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 33 - 183
Target Start/End: Complemental strand, 39603143 - 39602993
Alignment:
Q  33 ttctctttagactcaagttccttaacttgtcctttcaattgcctctgttgtgattcgaactcctccacttggctttcaaaactcttcttttcagattcca 132  Q
    |||||||| || |||||||||||||| |||||||||||||||| | | | ||||  || ||||||||| ||||||||||||  |||||||| ||||||||    
T  39603143 ttctctttggattcaagttccttaacctgtcctttcaattgccacagatttgatgtgagctcctccacatggctttcaaaatgcttctttttagattcca 39603044  T
Q  133 gctccttcacctgctcttcaaaatctctcttttttgactcaagctccttca 183  Q
    ||||| |||| ||  ||||||| ||||| | |||||| ||| |||||||||    
T  39603043 gctccgtcacttggccttcaaactctctttcttttgattcatgctccttca 39602993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 159 - 265
Target Start/End: Complemental strand, 39136647 - 39136541
Alignment:
Q  159 ctcttttttgactcaagctccttcattcggctttcgaaatgcttctgttttgatatcaaatcattcactagctccttcgcctggatttcaaattccttct 258  Q
    |||| ||| |||||||||||||| ||  ||||||||||||||||||||||||||| |||||||||||| ||||||||| | ||| |||| |||||||| |    
T  39136647 ctctctttcgactcaagctccttaatatggctttcgaaatgcttctgttttgataccaaatcattcaccagctccttcacttggctttccaattcctttt 39136548  T
Q  259 cttttga 265  Q
     ||||||    
T  39136547 gttttga 39136541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 83 - 227
Target Start/End: Original strand, 39415111 - 39415255
Alignment:
Q  83 tgattcgaactcctccacttggctttcaaaactcttcttttcagattccagctccttcacctgctcttcaaaatctctcttttttgactcaagctccttc 182  Q
    |||||| | ||||| || ||||||||| |||  ||||||||| |||||||||||||||||  |  |||||   |   ||| |||||||||||||||||||    
T  39415111 tgattcaagctccttcagttggctttcgaaatgcttcttttctgattccagctccttcactcgaccttcatgttgcttctcttttgactcaagctccttc 39415210  T
Q  183 attcggctttcgaaatgcttctgttttgatatcaaatcattcact 227  Q
    ||||||||||| ||||| ||| ||||||||| |||||||||||||    
T  39415211 attcggctttcaaaatgattcagttttgataccaaatcattcact 39415255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 41 - 169
Target Start/End: Original strand, 39473823 - 39473951
Alignment:
Q  41 agactcaagttccttaacttgtcctttcaattgcctctgttgtgattcgaactcctccacttggctttcaaaactcttcttttcagattccagctccttc 140  Q
    ||||||||||||||||||||||||||||||||| || | || ||||| ||  |||||||||||  |||| ||| ||||||||| |||||| ||| |||||    
T  39473823 agactcaagttccttaacttgtcctttcaattgtctttcttctgatttgagatcctccacttgcatttctaaattcttctttttagattctagccccttc 39473922  T
Q  141 acctgctcttcaaaatctctcttttttga 169  Q
    |||||   |||||| ||||||| ||||||    
T  39473923 acctggctttcaaattctctctgttttga 39473951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 168 - 265
Target Start/End: Complemental strand, 39152255 - 39152158
Alignment:
Q  168 gactcaagctccttcattcggctttcgaaatgcttctgttttgatatcaaatcattcactagctccttcgcctggatttcaaattccttctcttttga 265  Q
    |||||||| ||||| || |||||||| |||||||||||||| |||| |||||||||||| ||||||||  | ||| ||||||||||||||| ||||||    
T  39152255 gactcaagttccttaatccggctttcaaaatgcttctgtttggataccaaatcattcaccagctcctttacttggctttcaaattccttctgttttga 39152158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 168 - 265
Target Start/End: Original strand, 39416084 - 39416181
Alignment:
Q  168 gactcaagctccttcattcggctttcgaaatgcttctgttttgatatcaaatcattcactagctccttcgcctggatttcaaattccttctcttttga 265  Q
    ||||||||||||||||| ||||||| | ||||| | |||| ||||| |||||||||| ||||||||||| | ||| ||||||||||||||| ||||||    
T  39416084 gactcaagctccttcatgcggcttttgtaatgcatgtgttctgataccaaatcattccctagctccttcacttggctttcaaattccttctgttttga 39416181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 164 - 220
Target Start/End: Original strand, 39390639 - 39390695
Alignment:
Q  164 ttttgactcaagctccttcattcggctttcgaaatgcttctgttttgatatcaaatc 220  Q
    ||||||||||| |||||||||| ||||||| ||||||||||||||||||| ||||||    
T  39390639 ttttgactcaaactccttcatttggctttcaaaatgcttctgttttgatagcaaatc 39390695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 168 - 224
Target Start/End: Original strand, 39422204 - 39422260
Alignment:
Q  168 gactcaagctccttcattcggctttcgaaatgcttctgttttgatatcaaatcattc 224  Q
    |||||||| ||||||||||||||||| || |||||||||||||||| ||||||||||    
T  39422204 gactcaaggtccttcattcggctttcaaattgcttctgttttgataccaaatcattc 39422260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 71 - 179
Target Start/End: Complemental strand, 39451865 - 39451757
Alignment:
Q  71 ttgcctctgttgtgattcgaactcctccacttggctttcaaaactcttcttttcagattccagctccttcacctgctcttcaaaatctctcttttttgac 170  Q
    |||||||| || ||||| || ||||||||||||||||||||||  |||||||| ||||||||| |||||||| |   ||||||| ||||||  ||||||     
T  39451865 ttgcctctcttttgatttgagctcctccacttggctttcaaaatgcttctttttagattccagatccttcactttgccttcaaattctctcacttttgat 39451766  T
Q  171 tcaagctcc 179  Q
    ||| |||||    
T  39451765 tcatgctcc 39451757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 39137490 - 39137399
Alignment:
Q  21 ccatcaagttgcttctctttagactcaagttccttaacttgtcctttcaattgcctctgttgtgattcgaactcctccacttggctttcaaa 112  Q
    |||||||||| ||||||||||||||||||||| |||| ||||||||     ||||||| || |||||  | |||||||||||||||||||||    
T  39137490 ccatcaagtttcttctctttagactcaagttctttaaattgtccttgactatgcctctcttttgatttaagctcctccacttggctttcaaa 39137399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 213
Target Start/End: Original strand, 39192970 - 39193067
Alignment:
Q  116 cttcttttcagattccagctccttcacctgctcttcaaaatctctcttttttgactcaagctccttcattcggctttcgaaatgcttctgttttgata 213  Q
    |||||||| | |||||| |||||||||| | |||||||| | | ||| |||| | ||||| |||||||| ||| |||||||||||| |||||||||||    
T  39192970 cttcttttgaaattccaactccttcacccgatcttcaaattttttctcttttaattcaagatccttcatccggttttcgaaatgctcctgttttgata 39193067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 213
Target Start/End: Original strand, 39198650 - 39198747
Alignment:
Q  116 cttcttttcagattccagctccttcacctgctcttcaaaatctctcttttttgactcaagctccttcattcggctttcgaaatgcttctgttttgata 213  Q
    |||||||| | |||||| |||||||||| | |||||||| | | ||| |||| | ||||| |||||||| ||| |||||||||||| |||||||||||    
T  39198650 cttcttttgaaattccaactccttcacccgatcttcaaattttttctcttttaattcaagatccttcatccggttttcgaaatgctcctgttttgata 39198747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 203
Target Start/End: Complemental strand, 39221983 - 39221870
Alignment:
Q  90 aactcctccacttggctttcaaaactcttcttttcagattccagctccttcacctgctcttcaaaatctctcttttttgactcaagctccttcattcggc 189  Q
    ||||||| |||||||||||||||   |||||||| |||||||||||||||||| ||    ||||  |   ||| ||| ||||||| |||||||||| |||    
T  39221983 aactccttcacttggctttcaaacagcttctttttagattccagctccttcacttggctatcaagttgcttctctttagactcaaactccttcatttggc 39221884  T
Q  190 tttcgaaatgcttc 203  Q
    ||||||||||||||    
T  39221883 tttcgaaatgcttc 39221870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 203
Target Start/End: Complemental strand, 39222193 - 39222080
Alignment:
Q  90 aactcctccacttggctttcaaaactcttcttttcagattccagctccttcacctgctcttcaaaatctctcttttttgactcaagctccttcattcggc 189  Q
    ||||||| |||||||||||||||   |||||||| |||||||||||||||||| ||    ||||  |   ||| ||| ||||||| |||||||||| |||    
T  39222193 aactccttcacttggctttcaaacagcttctttttagattccagctccttcacttggctatcaagttgcttctctttagactcaaactccttcatttggc 39222094  T
Q  190 tttcgaaatgcttc 203  Q
    ||||||||||||||    
T  39222093 tttcgaaatgcttc 39222080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 254 - 307
Target Start/End: Original strand, 39390633 - 39390686
Alignment:
Q  254 cttctcttttgattcaaaatccttcacttgtctttcaaaatgcttctgttttga 307  Q
    |||||||||||| ||||| ||||||| ||| |||||||||||||||||||||||    
T  39390633 cttctcttttgactcaaactccttcatttggctttcaaaatgcttctgttttga 39390686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 273 - 326
Target Start/End: Original strand, 39474055 - 39474108
Alignment:
Q  273 tccttcacttgtctttcaaaatgcttctgttttgaaatgttatccttgacttga 326  Q
    ||||||||||| |||||||| | |||||||||||||||||||||| ||||||||    
T  39474055 tccttcacttggctttcaaattccttctgttttgaaatgttatccatgacttga 39474108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 39152284 - 39152240
Alignment:
Q  13 tcactcgaccatcaagttgcttctctttagactcaagttccttaa 57  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||    
T  39152284 tcactcgtccatcaagttgtttctctttagactcaagttccttaa 39152240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 189
Target Start/End: Complemental strand, 39222655 - 39222556
Alignment:
Q  90 aactcctccacttggctttcaaaactcttcttttcagattccagctccttcacctgctcttcaaaatctctcttttttgactcaagctccttcattcggc 189  Q
    |||||||  |||||||||||||    |||||||| ||||| |||||||||||| ||   |||||| ||||||| |||||| ||| |||||||||||||||    
T  39222655 aactccttaacttggctttcaacctgcttctttttagattgcagctccttcacttgaatttcaaattctctctcttttgattcatgctccttcattcggc 39222556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 140
Target Start/End: Original strand, 39389614 - 39389733
Alignment:
Q  21 ccatcaagttgcttctctttagactcaagttccttaacttgtcctttcaattgcctctgttgtgattcgaactcctccacttggctttcaaaactcttct 120  Q
    |||||||||||||||||||| || |||| ||||| || |||| |||||||| |||||  || ||||| || |||| |||    |||||| |||  |||||    
T  39389614 ccatcaagttgcttctctttggagtcaaattcctgaaattgtactttcaatagcctcaattttgatttgagctccaccatcatgctttcgaaatgcttct 39389713  T
Q  121 tttcagattccagctccttc 140  Q
    ||| ||||||||||||||||    
T  39389714 ttttagattccagctccttc 39389733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 39390918 - 39390965
Alignment:
Q  23 atcaagttgcttctctttagactcaagttccttaacttgtcctttcaa 70  Q
    ||||||||||||||||||||| |||||||||| ||||||| |||||||    
T  39390918 atcaagttgcttctctttagagtcaagttcctcaacttgttctttcaa 39390965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 183
Target Start/End: Original strand, 39192545 - 39192659
Alignment:
Q  69 aattgcctctgttgtgattcgaactcctccacttggctttcaaaactcttcttttcagattccagctccttcacctgctcttcaaaatctctcttttttg 168  Q
    |||||| ||| || ||||| ||||||||||||||| |||| ||||  |||||||  |||||| || |||||||| ||  |||| || ||||||| |||||    
T  39192545 aattgcttctcttttgatttgaactcctccacttgacttttaaaatgcttctttctagattcaagttccttcacttggccttcgaattctctctcttttg 39192644  T
Q  169 actcaagctccttca 183  Q
    | ||| |||||||||    
T  39192645 attcacgctccttca 39192659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 77
Target Start/End: Original strand, 39192751 - 39192805
Alignment:
Q  23 atcaagttgcttctctttagactcaagttccttaacttgtcctttcaattgcctc 77  Q
    ||||||||||||||||||||| | || |||||||||||||||| ||||| |||||    
T  39192751 atcaagttgcttctctttagagtaaaattccttaacttgtcctatcaatggcctc 39192805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 183
Target Start/End: Original strand, 39198225 - 39198339
Alignment:
Q  69 aattgcctctgttgtgattcgaactcctccacttggctttcaaaactcttcttttcagattccagctccttcacctgctcttcaaaatctctcttttttg 168  Q
    |||||| ||| || ||||| ||||||||||||||| |||| ||||  |||||||  |||||| || |||||||| ||  |||| || ||||||| |||||    
T  39198225 aattgcttctcttttgatttgaactcctccacttgacttttaaaatgcttctttctagattcaagttccttcacttggccttcgaattctctctcttttg 39198324  T
Q  169 actcaagctccttca 183  Q
    | ||| |||||||||    
T  39198325 attcacgctccttca 39198339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 77
Target Start/End: Original strand, 39198431 - 39198485
Alignment:
Q  23 atcaagttgcttctctttagactcaagttccttaacttgtcctttcaattgcctc 77  Q
    ||||||||||||||||||||| | || |||||||||||||||| ||||| |||||    
T  39198431 atcaagttgcttctctttagagtaaaattccttaacttgtcctatcaatggcctc 39198485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 39221359 - 39221309
Alignment:
Q  21 ccatcaagttgcttctctttagactcaagttccttaacttgtcctttcaat 71  Q
    |||||||||||||||||||| || |||||||||| ||| ||||||||||||    
T  39221359 ccatcaagttgcttctctttggagtcaagttcctcaacctgtcctttcaat 39221309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 212
Target Start/End: Original strand, 39389937 - 39390015
Alignment:
Q  134 ctccttcacctgctcttcaaaatctctcttttttgactcaagctccttcattcggctttcgaaatgcttctgttttgat 212  Q
    ||||||||| ||  ||||||| | ||||| |||||| ||||||||| |||||||| |||| |||| |||||||||||||    
T  39389937 ctccttcacttggccttcaaactttctctcttttgaatcaagctccctcattcggttttcaaaatccttctgttttgat 39390015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 168 - 233
Target Start/End: Complemental strand, 38792719 - 38792654
Alignment:
Q  168 gactcaagctccttcattcggctttcgaaatgcttctgttttgatatcaaatcattcactagctcc 233  Q
    |||||||| |||||||||||| |||||||| ||||||||||  |||  ||||||||||| ||||||    
T  38792719 gactcaaggtccttcattcggttttcgaaaagcttctgtttcaatacaaaatcattcaccagctcc 38792654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 116 - 193
Target Start/End: Original strand, 39390129 - 39390206
Alignment:
Q  116 cttcttttcagattccagctccttcacctgctcttcaaaatctctcttttttgactcaagctccttcattcggctttc 193  Q
    |||||||| ||||||||| |||||||  ||  ||||||||||||||| ||| || ||| ||||||||| |||||||||    
T  39390129 cttctttttagattccagttccttcatttggccttcaaaatctctctctttggattcatgctccttcactcggctttc 39390206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 265
Target Start/End: Original strand, 39487902 - 39488003
Alignment:
Q  164 ttttgactcaagctccttcattcggctttcgaaatgcttctgttttgatatcaaatcattcactagctccttcgcctggatttcaaattccttctctttt 263  Q
    ||||||||||| ||| ||| ||||| |||| ||||| || ||| |  ||| |||||||||||| |||||||||  |||| ||||||||| ||||| ||||    
T  39487902 ttttgactcaatctcattcgttcggttttcaaaatggttatgtctgaataacaaatcattcaccagctccttcatctggctttcaaatttcttctgtttt 39488001  T
Q  264 ga 265  Q
    ||    
T  39488002 ga 39488003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 39136821 - 39136777
Alignment:
Q  27 agttgcttctctttagactcaagttccttaacttgtcctttcaat 71  Q
    |||||||||||||||||  |||||||||||| |||||||||||||    
T  39136821 agttgcttctctttagaggcaagttccttaatttgtcctttcaat 39136777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 39415576 - 39415624
Alignment:
Q  164 ttttgactcaagctccttcattcggctttcgaaatgcttctgttttgat 212  Q
    ||||| |||||||||||||||||  |||| |||||||||||||||||||    
T  39415576 ttttgcctcaagctccttcattctccttttgaaatgcttctgttttgat 39415624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 213
Target Start/End: Complemental strand, 39467698 - 39467650
Alignment:
Q  165 tttgactcaagctccttcattcggctttcgaaatgcttctgttttgata 213  Q
    |||||||| | |||||||| ||||||||| |||||||||||||||||||    
T  39467698 tttgactctaactccttcaatcggctttcaaaatgcttctgttttgata 39467650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 169 - 208
Target Start/End: Complemental strand, 38792970 - 38792931
Alignment:
Q  169 actcaagctccttcattcggctttcgaaatgcttctgttt 208  Q
    ||||||| ||||||||| ||||||||||||||||||||||    
T  38792970 actcaagttccttcatttggctttcgaaatgcttctgttt 38792931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 273 - 324
Target Start/End: Complemental strand, 39152192 - 39152141
Alignment:
Q  273 tccttcacttgtctttcaaaatgcttctgttttgaaatgttatccttgactt 324  Q
    ||||| ||||| |||||||| | |||||||||||||||||||||| ||||||    
T  39152192 tcctttacttggctttcaaattccttctgttttgaaatgttatccatgactt 39152141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 90 - 169
Target Start/End: Original strand, 39415712 - 39415791
Alignment:
Q  90 aactcctccacttggctttcaaaactcttcttttcagattccagctccttcacctgctcttcaaaatctctcttttttga 169  Q
    |||||||  |||||| |||||||   |||||||| ||||| |||||||||||||||  ||||||| ||||||| ||||||    
T  39415712 aactccttgacttggatttcaaacagcttctttttagatttcagctccttcacctggccttcaaattctctctcttttga 39415791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 273 - 316
Target Start/End: Original strand, 39416147 - 39416190
Alignment:
Q  273 tccttcacttgtctttcaaaatgcttctgttttgaaatgttatc 316  Q
    ||||||||||| |||||||| | |||||||||||||||||||||    
T  39416147 tccttcacttggctttcaaattccttctgttttgaaatgttatc 39416190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 327
Target Start/End: Complemental strand, 38792395 - 38792342
Alignment:
Q  273 tccttcacttgtctttcaaaatgcttctgttttgaaatgttatccttgacttgat 327  Q
    ||||||||||| ||||| ||||||||||| |||||||||| |||| |||||||||    
T  38792395 tccttcacttggctttccaaatgcttctg-tttgaaatgtcatccatgacttgat 38792342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 307
Target Start/End: Complemental strand, 39222827 - 39222765
Alignment:
Q  245 ttcaaattccttctcttttgattcaaaatccttcacttgtctttcaaaatgcttctgttttga 307  Q
    |||||||| |||||||||||||| ||| ||||  ||||| ||||| |||||||||| ||||||    
T  39222827 ttcaaattgcttctcttttgatttaaactcctcgacttggctttcgaaatgcttcttttttga 39222765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #46
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 39415895 - 39415945
Alignment:
Q  21 ccatcaagttgcttctctttagactcaagttccttaacttgtcctttcaat 71  Q
    ||||| |||||||||||||||||  ||||||||||||  ||||||||||||    
T  39415895 ccatcgagttgcttctctttagaagcaagttccttaaactgtcctttcaat 39415945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #47
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 39422183 - 39422217
Alignment:
Q  21 ccatcaagttgcttctctttagactcaagttcctt 55  Q
    ||||||||||||||||||||||||||||| |||||    
T  39422183 ccatcaagttgcttctctttagactcaaggtcctt 39422217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #48
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 326
Target Start/End: Complemental strand, 39136575 - 39136522
Alignment:
Q  273 tccttcacttgtctttcaaaatgcttctgttttgaaatgttatccttgacttga 326  Q
    ||||||||||| ||||| || | ||| |||||||||||||||||| ||||||||    
T  39136575 tccttcacttggctttccaattccttttgttttgaaatgttatccatgacttga 39136522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #49
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 213
Target Start/End: Complemental strand, 39161673 - 39161624
Alignment:
Q  164 ttttgactcaagctccttcattcggctttcgaaatgcttctgttttgata 213  Q
    ||||||||||||||||| |||| || |||||| |||||||| ||||||||    
T  39161673 ttttgactcaagctcctacatttggttttcgacatgcttctcttttgata 39161624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #50
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 213
Target Start/End: Original strand, 39207521 - 39207570
Alignment:
Q  164 ttttgactcaagctccttcattcggctttcgaaatgcttctgttttgata 213  Q
    ||||||||||||||||| |||| || |||||| |||||||| ||||||||    
T  39207521 ttttgactcaagctcctacatttggttttcgacatgcttctcttttgata 39207570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #51
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 213
Target Start/End: Original strand, 39389400 - 39389449
Alignment:
Q  164 ttttgactcaagctccttcattcggctttcgaaatgcttctgttttgata 213  Q
    |||||||||||||||||||||| || |||||| | ||||||| |||||||    
T  39389400 ttttgactcaagctccttcatttggttttcgatacgcttctgatttgata 39389449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #52
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 282
Target Start/End: Original strand, 39390708 - 39390745
Alignment:
Q  245 ttcaaattccttctcttttgattcaaaatccttcactt 282  Q
    ||||||||||||||||||||||||||| ||||| ||||    
T  39390708 ttcaaattccttctcttttgattcaaactcctttactt 39390745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #53
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 139
Target Start/End: Original strand, 44895653 - 44895698
Alignment:
Q  94 cctccacttggctttcaaaactcttcttttcagattccagctcctt 139  Q
    |||| |||||||||||||||| ||||||||| ||||| ||||||||    
T  44895653 cctcaacttggctttcaaaacgcttcttttctgattcgagctcctt 44895698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #54
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 305
Target Start/End: Complemental strand, 39215574 - 39215514
Alignment:
Q  245 ttcaaattccttctcttttgattcaaaatccttcacttgtctttcaaaatgcttctgtttt 305  Q
    |||||||| ||||||||||||||||||   ||  |||||||||||||| ||||||| ||||    
T  39215574 ttcaaattgcttctcttttgattcaaagctctcaacttgtctttcaaattgcttctttttt 39215514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #55
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 39389799 - 39389843
Alignment:
Q  164 ttttgactcaagctccttcattcggctttcgaaatgcttctgttt 208  Q
    |||||||||||||||||||||| ||||||   |||||||||||||    
T  39389799 ttttgactcaagctccttcatttggcttttataatgcttctgttt 39389843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #56
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 281
Target Start/End: Original strand, 39390792 - 39390828
Alignment:
Q  245 ttcaaattccttctcttttgattcaaaatccttcact 281  Q
    |||||||||||||| |||||||||||| |||||||||    
T  39390792 ttcaaattccttcttttttgattcaaattccttcact 39390828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #57
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 165 - 213
Target Start/End: Original strand, 39398533 - 39398581
Alignment:
Q  165 tttgactcaagctccttcattcggctttcgaaatgcttctgttttgata 213  Q
    |||||||| | |||||||| |||| |||| |||||||||||||||||||    
T  39398533 tttgactctaactccttcaatcggatttcaaaatgcttctgttttgata 39398581  T

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Target: chr2; HSP #58
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 204
Target Start/End: Original strand, 39415108 - 39415148
Alignment:
Q  164 ttttgactcaagctccttcattcggctttcgaaatgcttct 204  Q
    |||||| ||||||||||||| | ||||||||||||||||||    
T  39415108 ttttgattcaagctccttcagttggctttcgaaatgcttct 39415148  T

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Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 172 - 326
Target Start/End: Complemental strand, 17059224 - 17059082
Alignment:
Q  172 caagctccttcattcggctttcgaaatgcttctgttttgatatcaaatcattcactagctccttcgcctggatttcaaattccttctcttttgattcaaa 271  Q
    ||||||||||||||||||||||||||||||| ||  |||||| |||||| ||||||            |||||||||||||||||||||| |||||||||    
T  17059224 caagctccttcattcggctttcgaaatgcttatgaattgataccaaatccttcact------------tggatttcaaattccttctcttgtgattcaaa 17059137  T
Q  272 atccttcacttgtctttcaaaatgcttctgttttgaaatgttatccttgacttga 326  Q
     | ||||| ||  ||||||||||||||||||||||||||||||||| ||||||||    
T  17059136 cttcttcaatttgctttcaaaatgcttctgttttgaaatgttatccatgacttga 17059082  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 40 - 142
Target Start/End: Complemental strand, 17059398 - 17059296
Alignment:
Q  40 tagactcaagttccttaacttgtcctttcaattgcctctgttgtgattcgaactcctccacttggctttcaaaactcttcttttcagattccagctcctt 139  Q
    |||||||||| |||| ||||| ||||| ||||||||||| || ||||| || ||||||||||||| | ||||||  ||| |||| |||||||||||||||    
T  17059398 tagactcaagatcctgaacttctccttccaattgcctctcttttgatttgagctcctccacttggatatcaaaatccttttttttagattccagctcctt 17059299  T
Q  140 cac 142  Q
    |||    
T  17059298 cac 17059296  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 213
Target Start/End: Complemental strand, 33560794 - 33560745
Alignment:
Q  164 ttttgactcaagctccttcattcggctttcgaaatgcttctgttttgata 213  Q
    ||||||||| |||||||||||| || |||||| |||||||||||||||||    
T  33560794 ttttgactcgagctccttcatttggttttcgacatgcttctgttttgata 33560745  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 33560519 - 33560468
Alignment:
Q  19 gaccatcaagttgcttctctttagactcaagttccttaacttgtcctttcaa 70  Q
    ||||||||||||||||||||||||| |||||||| | || |||| |||||||    
T  33560519 gaccatcaagttgcttctctttagaatcaagttcttgaagttgttctttcaa 33560468  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 244 - 280
Target Start/End: Complemental strand, 33560264 - 33560228
Alignment:
Q  244 tttcaaattccttctcttttgattcaaaatccttcac 280  Q
    ||||||| |||||||||||||||||||| ||||||||    
T  33560264 tttcaaaatccttctcttttgattcaaactccttcac 33560228  T

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Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 159 - 265
Target Start/End: Complemental strand, 19807008 - 19806902
Alignment:
Q  159 ctcttttttgactcaagctccttcattcggctttcgaaatgcttctgttttgatatcaaatcattcactagctccttcgcctggatttcaaattccttct 258  Q
    |||| ||| |||||||||||||| ||  ||||||||||||||||||||||||||| |||||||||||  ||||||||| | ||| |||| |||||||| |    
T  19807008 ctctctttcgactcaagctccttaatatggctttcgaaatgcttctgttttgataccaaatcattcatcagctccttcacgtggctttccaattcctttt 19806909  T
Q  259 cttttga 265  Q
     ||||||    
T  19806908 gttttga 19806902  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 189
Target Start/End: Complemental strand, 19807440 - 19807272
Alignment:
Q  21 ccatcaagttgcttctctttagactcaagttccttaacttgtcctttcaattgcctctgttgtgattcgaactcctccacttggctttcaaaactcttct 120  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||     || |||| || |||||  | |||||||||||||||||||||   |||||    
T  19807440 ccatcaagttgcttcgctttagactcaagttctttaacttgtccttgagtatgtctctcttttgatttaagctcctccacttggctttcaaacagcttct 19807341  T
Q  121 tttcagattccagctccttcacctgctcttcaaaatctctcttttttgactcaagctccttcattcggc 189  Q
    ||| ||||| | ||||| |||  ||   |||||| ||||||| ||||||  || |||||||||| ||||    
T  19807340 ttttagattgctgctccatcatttggctttcaaattctctctcttttgatgcatgctccttcatccggc 19807272  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 329
Target Start/End: Complemental strand, 19806936 - 19806880
Alignment:
Q  273 tccttcacttgtctttcaaaatgcttctgttttgaaatgttatccttgacttgatga 329  Q
    |||||||| || ||||| || | ||| |||||||||||||||||| |||||||||||    
T  19806936 tccttcacgtggctttccaattccttttgttttgaaatgttatccatgacttgatga 19806880  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 19807182 - 19807138
Alignment:
Q  27 agttgcttctctttagactcaagttccttaacttgtcctttcaat 71  Q
    |||||||||||||||||  |||| ||||||| |||||||||||||    
T  19807182 agttgcttctctttagaggcaagctccttaagttgtcctttcaat 19807138  T

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