View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18589_low_29 (Length: 319)
Name: NF18589_low_29
Description: NF18589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18589_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 167; Significance: 2e-89; HSPs: 12)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 18 - 184
Target Start/End: Complemental strand, 36196641 - 36196475
Alignment:
| Q |
18 |
ccattatggtaagatttcccctgtttcttgcagtaatttcgtctgtggttctttaaagggagggaggaattcactttcttctttgataaaatggtttgaa |
117 |
Q |
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| T |
36196641 |
ccattatggtaagatttcccctgtttcttgcagtaatttcgtctgtggttctttaaagggagggaggaattcactttcttctttgataaaatggtttgaa |
36196542 |
T |
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| Q |
118 |
ctatgtttggaatggttgcttctgttaacaagtcacttttgctaaatagtatagcatattgtagctg |
184 |
Q |
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| T |
36196541 |
ctatgtttggaatggttgcttctgttaacaagtcacttttgctaaatagtatagcatattgtagctg |
36196475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 18 - 184
Target Start/End: Complemental strand, 36209765 - 36209598
Alignment:
| Q |
18 |
ccattatggtaagatttcccctgtttcttgcagtaatttcgtctgtggttctttaaagggagggaggaattcactttcttctttgataaaatggtttgaa |
117 |
Q |
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| T |
36209765 |
ccattatggtaagatttcccttgtttcttgcagtaatttcctctgtggttctttaaagggagggaagaattcaccttcctctctaataagatggtttgaa |
36209666 |
T |
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| Q |
118 |
ctatgtttggaatggttgcttctgttaacaagtcact-tttgctaaatagtatagcatattgtagctg |
184 |
Q |
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| T |
36209665 |
ctatgtttggtatggttggttctgttaacaagtcattgtttgctaaatagtataacatattgtagctg |
36209598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 22 - 180
Target Start/End: Complemental strand, 36184376 - 36184218
Alignment:
| Q |
22 |
tatggtaagatttcccctgtttcttgcagtaatttcgtctgtggttctttaaagggagggaggaattcactttcttctttgataaaatggtttgaactat |
121 |
Q |
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| T |
36184376 |
tatggtaagatttcacttgtttcttgcagtaatttccactgcggttctttcaagggaggagggaatttaacttcctcttcgataaaatggtttgaactat |
36184277 |
T |
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| Q |
122 |
gtttggaatggttgcttctgttaacaagtcacttttgctaaatagtatagcatattgta |
180 |
Q |
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|||||| ||||||| ||||||||||| |||||||||||||||||||||| ||||||||| |
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| T |
36184276 |
gtttggtatggttggttctgttaacatgtcacttttgctaaatagtataacatattgta |
36184218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 217 - 307
Target Start/End: Complemental strand, 36196442 - 36196352
Alignment:
| Q |
217 |
atattaacttggagggcaaggctatgctttgacctgataaataattgtataattgtaaaggcttttgtactatgtttgaaatctcaatatt |
307 |
Q |
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| T |
36196442 |
atattaacttggagtgcaaggctatgctttgacctgataaataattgtataattgtaaaggcttttgtactatgtttgaaatctcaatatt |
36196352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 18 - 180
Target Start/End: Complemental strand, 36188323 - 36188158
Alignment:
| Q |
18 |
ccattatggtaagatttcccctgtttcttgcagtaatttcgtctgtggttctttaaagggagggaggaattcactttcttctttgataaaatggtttgaa |
117 |
Q |
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|||||||||||||||||||| | ||||||||||||||||| ||||||| ||||||||||||||| ||||||||| ||| ||| | ||||||||||||||| |
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| T |
36188323 |
ccattatggtaagatttccctt-tttcttgcagtaatttcctctgtggctctttaaagggaggggggaattcaccttcctctctaataaaatggtttgaa |
36188225 |
T |
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| Q |
118 |
ctatgtttggaatggttgcttc---tgttaacaagtca-cttttgctaaatagtatagcatattgta |
180 |
Q |
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||| |||||| |||||| ||| ||||||||||||| |||||||||||||||| ||||||||| |
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| T |
36188224 |
ctaggtttggtatggtttgttctgttgttaacaagtcatggtttgctaaatagtataacatattgta |
36188158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 217 - 305
Target Start/End: Complemental strand, 36188121 - 36188033
Alignment:
| Q |
217 |
atattaacttggagggcaaggctatgctttgacctgataaataattgtataattgtaaaggcttttgtactatgtttgaaatctcaata |
305 |
Q |
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|||||||||||||| ||||||||||| ||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||| |
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| T |
36188121 |
atattaacttggagtgcaaggctatggtttgacctgataaataattgtataattctgaagtcttttgtactatgtttgaaatctcaata |
36188033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 219 - 307
Target Start/End: Complemental strand, 36184179 - 36184089
Alignment:
| Q |
219 |
attaacttggagggcaaggctatgcttt-gacctgataaataattgtataa-ttgtaaaggcttttgtactatgtttgaaatctcaatatt |
307 |
Q |
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| T |
36184179 |
attaactttgagtgtaaggctatgtttttgaccggataaataattgtataaattgtaaaggcttttgtactatgtttgaaatctcaatatt |
36184089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 24 - 151
Target Start/End: Complemental strand, 36200545 - 36200418
Alignment:
| Q |
24 |
tggtaagatttcccctgtttcttgcagtaatttcgtctgtggttctttaaagggagggaggaattcactttcttctttgataaaatggtttgaactatgt |
123 |
Q |
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|||||||||||| | ||||||||||| || |||| | |||||||| |||| ||| ||||||||||||||| ||||||| ||||| ||||||||| || |
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| T |
36200545 |
tggtaagatttctcttgtttcttgcattattttcctatgtggttcagaaaagagagagaggaattcactttcctctttgacaaaatagtttgaactcggt |
36200446 |
T |
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| Q |
124 |
ttggaatggttgcttctgttaacaagtc |
151 |
Q |
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|||| |||||| ||||||||||||||| |
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| T |
36200445 |
ttggtatggttagttctgttaacaagtc |
36200418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 217 - 270
Target Start/End: Complemental strand, 36209565 - 36209512
Alignment:
| Q |
217 |
atattaacttggagggcaaggctatgctttgacctgataaataattgtataatt |
270 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
36209565 |
atattaacttggagtgcaaggctatgctttgacctgataaataattgtataatt |
36209512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 294
Target Start/End: Complemental strand, 36201811 - 36201749
Alignment:
| Q |
232 |
gcaaggctatgctttgacctgataaataattgtataattgtaaaggcttttgtactatgtttg |
294 |
Q |
| |
|
||||||||||| ||| ||| ||||||||||| | |||||||| |||||||||||| ||||||| |
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|
| T |
36201811 |
gcaaggctatgttttaaccagataaataattttgtaattgtataggcttttgtacgatgtttg |
36201749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 294
Target Start/End: Complemental strand, 36214316 - 36214245
Alignment:
| Q |
225 |
ttggagggcaaggctatgctttgacctgataaataattgtataattgtaaag--gcttttgtactatgtttg |
294 |
Q |
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| T |
36214316 |
ttggagtgtaagtctatgttttgacctgataaataattatgtaattgtaagggcgcttttgtactatgtttg |
36214245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 294
Target Start/End: Complemental strand, 36203209 - 36203149
Alignment:
| Q |
234 |
aaggctatgctttgacctgataaataattgtataattgtaaaggcttttgtactatgtttg |
294 |
Q |
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||||||||| ||| | |||||||||||||| |||||||| | ||||||||||||| |||| |
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| T |
36203209 |
aaggctatgtttttaactgataaataattgcgtaattgtacaagcttttgtactatttttg |
36203149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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