View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18589_low_31 (Length: 312)

Name: NF18589_low_31
Description: NF18589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18589_low_31
NF18589_low_31
[»] chr1 (8 HSPs)
chr1 (17-312)||(47760323-47760624)
chr1 (80-312)||(47718202-47718442)
chr1 (80-312)||(47713408-47713651)
chr1 (216-312)||(47745991-47746087)
chr1 (222-312)||(6500294-6500384)
chr1 (219-312)||(47772876-47772969)
chr1 (222-310)||(6513026-6513114)
chr1 (224-310)||(6517425-6517511)
[»] chr5 (3 HSPs)
chr5 (216-312)||(28861934-28862030)
chr5 (220-312)||(28856657-28856749)
chr5 (237-312)||(28831461-28831536)


Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 17 - 312
Target Start/End: Complemental strand, 47760624 - 47760323
Alignment:
Q  17 atgaccgactttcatatccaaattaaagcttcaatcctatatttgttggttacttgttaattattccaagacagagagcaatatcagcatggcaattgtt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47760624 atgaccgactttcatatccaaattaaagcttcaatcctatatttgttggttacttgttaattattccaagacagagagcaatatcagcatggcaattgtt 47760525  T
Q  117 tcttgcaagttattacttaccttttattcttttctctttctcattacttttgtatctcaagccaaagcccaacctgattttctgtacaacttttgtata- 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |     
T  47760524 tcttgcaagttattacttaccttttattcttttctctttctcattacttttgtatctcaagccaaagcccaacctgattttctgtacaacttttgtaaaa 47760425  T
Q  216 -----aatggcaactacacagccaatagcacctatcaaaacaccctcaacaccgttttgtccaatctaacttccaacgcagaaatcaactacggtttcta 310  Q
         ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47760424 acgataatggcaactacacagccaatagcacctatcaaaacaacctcaacaccgttttgtccaatctaacttccaacgcagaaatcaactacggtttcta 47760325  T
Q  311 ca 312  Q
    ||    
T  47760324 ca 47760323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 80 - 312
Target Start/End: Complemental strand, 47718442 - 47718202
Alignment:
Q  80 ttccaagacagagagcaatat-ca-gcatggcaattgtttcttgcaagttattacttaccttttattcttttctctttctcattacttttgtatctcaag 177  Q
    |||||||||||||| |||||| || | ||| ||| ||||||| ||||| ||||| || ||||||||||| |||| ||| | || | | | ||||||||||    
T  47718442 ttccaagacagagatcaatatacacgaatgacaactgtttctagcaagctattattttccttttattctgttctttttattatcattatcgtatctcaag 47718343  T
Q  178 ccaaagcccaacctgattttctgtacaacttttgtataaa------tggcaactacacagccaatagcacctatcaaaacaccctcaacaccgttttgtc 271  Q
    || ||| ||||||  ||||| ||  ||||| |||||||||      ||||||||||||||||||||||||||||||||||| ||||| |||| |||||||    
T  47718342 cccaaggccaaccaaattttttgcgcaactattgtataaacaataatggcaactacacagccaatagcacctatcaaaacaacctcagcacccttttgtc 47718243  T
Q  272 caatctaacttccaacgcagaaatcaactacggtttctaca 312  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  47718242 caatctaacttccaacacagaaatcaactacggtttctaca 47718202  T

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Target: chr1; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 80 - 312
Target Start/End: Complemental strand, 47713651 - 47713408
Alignment:
Q  80 ttccaagacagagagcaatat--cagcatggcaattgtttcttgcaagttattacttaccttttattcttttctctttctcattactttt---gtatctc 174  Q
    |||||||||||||| ||||||  ||| ||| ||||||||||| ||||| ||||| || ||||||| ||||||||| || | ||||   ||   |||||||    
T  47713651 ttccaagacagagatcaatatatcagaatgacaattgtttctagcaagctattattttccttttactcttttctcctttttattatcattatcgtatctc 47713552  T
Q  175 aagccaaagcccaacctgattttctgtacaacttttgtataaa------tggcaactacacagccaatagcacctatcaaaacaccctcaacaccgtttt 268  Q
    ||||| | | |||||| |||||| ||  | ||| |||||||||      ||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  47713551 aagcccagggccaaccagattttgtgcgctactcttgtataaacaataatggcaactacacagccaatagcacctatcaaaacaacctcaacaccctttt 47713452  T
Q  269 gtccaatctaacttccaacgcagaaatcaactacggtttctaca 312  Q
     |||||||| ||||||||| |  |||||||||||||||||||||    
T  47713451 atccaatctcacttccaacactcaaatcaactacggtttctaca 47713408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 216 - 312
Target Start/End: Complemental strand, 47746087 - 47745991
Alignment:
Q  216 aatggcaactacacagccaatagcacctatcaaaacaccctcaacaccgttttgtccaatctaacttccaacgcagaaatcaactacggtttctaca 312  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||| ||||||||| |  |||||||||||||||||||||    
T  47746087 aatggcaactacacagccaatagcacctatcaaaacaacctcaacacccttttatccaatctcacttccaacactcaaatcaactacggtttctaca 47745991  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 222 - 312
Target Start/End: Complemental strand, 6500384 - 6500294
Alignment:
Q  222 aactacacagccaatagcacctatcaaaacaccctcaacaccgttttgtccaatctaacttccaacgcagaaatcaactacggtttctaca 312  Q
    ||||||||| | |||||||||||| | || | |||||||||  |||| || | ||| ||||||||| ||||||||||||||||||||||||    
T  6500384 aactacacaacaaatagcacctatgacaaaaacctcaacacacttttatcaactctcacttccaacacagaaatcaactacggtttctaca 6500294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 312
Target Start/End: Original strand, 47772876 - 47772969
Alignment:
Q  219 ggcaactacacagccaatagcacctatcaaaacaccctcaacaccgttttgtccaatctaacttccaacgcagaaatcaactacggtttctaca 312  Q
    |||||||||||| |||||||||||||| | |||| ||| || ||  ||||||||| |||  ||||  |  ||||||||||||||||||||||||    
T  47772876 ggcaactacacatccaatagcacctatgacaacaaccttaaaactcttttgtccagtctttcttctcatacagaaatcaactacggtttctaca 47772969  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 310
Target Start/End: Complemental strand, 6513114 - 6513026
Alignment:
Q  222 aactacacagccaatagcacctatcaaaacaccctcaacaccgttttgtccaatctaacttccaacgcagaaatcaactacggtttcta 310  Q
    ||||||||| |||| ||||||||||| || | ||| |||||| || | |||| ||| |||||||||  ||| |||||||||||||||||    
T  6513114 aactacacaaccaacagcacctatcacaaaaaccttaacacccttctatccactctcacttccaacaaagatatcaactacggtttcta 6513026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 310
Target Start/End: Complemental strand, 6517511 - 6517425
Alignment:
Q  224 ctacacagccaatagcacctatcaaaacaccctcaacaccgttttgtccaatctaacttccaacgcagaaatcaactacggtttcta 310  Q
    ||||||| |||| |||||||| || |  | ||| |||||| |||| |||| ||| |||||||||  |||||||||||||||||||||    
T  6517511 ctacacaaccaacagcacctaccacacaaaccttaacacccttttatccattctcacttccaacaaagaaatcaactacggtttcta 6517425  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 216 - 312
Target Start/End: Complemental strand, 28862030 - 28861934
Alignment:
Q  216 aatggcaactacacagccaatagcacctatcaaaacaccctcaacaccgttttgtccaatctaacttccaacgcagaaatcaactacggtttctaca 312  Q
    |||||||||||||||   || ||||| |||||| | | |||||||||  |||| || | ||||||||||||| ||||||||| ||||||||||||||    
T  28862030 aatggcaactacacaaaaaacagcacatatcaacaaaacctcaacacacttttatcaactctaacttccaacacagaaatcacctacggtttctaca 28861934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 312
Target Start/End: Complemental strand, 28856749 - 28856657
Alignment:
Q  220 gcaactacacagccaatagcacctatcaaaacaccctcaacaccgttttgtccaatctaacttccaacgcagaaatcaactacggtttctaca 312  Q
    |||||||||||   || ||||| |||||| | | |||||||||  |||| || | ||||||||||||| ||||||||| ||||||||||||||    
T  28856749 gcaactacacaaaaaacagcacatatcaacaaaacctcaacacacttttatcaactctaacttccaacacagaaatcacctacggtttctaca 28856657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 237 - 312
Target Start/End: Complemental strand, 28831536 - 28831461
Alignment:
Q  237 agcacctatcaaaacaccctcaacaccgttttgtccaatctaacttccaacgcagaaatcaactacggtttctaca 312  Q
    ||||| |||||| | | |||||||||  |||| || | ||||||||||||| ||||||||| ||||||||||||||    
T  28831536 agcacatatcaacaaaacctcaacacacttttatcaactctaacttccaacacagaaatcacctacggtttctaca 28831461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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