View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18589_low_32 (Length: 309)
Name: NF18589_low_32
Description: NF18589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18589_low_32 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 17 - 265
Target Start/End: Complemental strand, 34851721 - 34851473
Alignment:
| Q |
17 |
attcttatctttcttgaactgcaaaagtgaataataacaatcatctttctagtggctattttgaatcatattcttaataaaaattataaagtcaactcgt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34851721 |
attcttatctttcttgaactgcaaaagtgaataataacaatcatctttctagtggctattttgaatcatattcttaataaaaattataaagtcaactcgt |
34851622 |
T |
|
| Q |
117 |
gacataatattcttagaatttaatttagttattaagtaagtttcaaacatttcattagatctcatcatttacaagatatttgaatatttttctaggaagg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34851621 |
gacataatattcttagaatttaatttagttattaagtaagtttcaaacatttcattagatctcatcatttacaagatatttgaatatttttctaggaagg |
34851522 |
T |
|
| Q |
217 |
atataataaatttctcaggtacttaaacgagggctgaaaaaggatgaga |
265 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
34851521 |
atataataaattcctcaggtaattaaacgagggcttaaaaaggatgaga |
34851473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 160 - 236
Target Start/End: Complemental strand, 3511696 - 3511619
Alignment:
| Q |
160 |
caaacatttcattagatctcatcatttacaagatatttgaatat-ttttctaggaaggatataataaatttctcaggt |
236 |
Q |
| |
|
||||||||| ||||||||||| |||||| ||||| |||| |||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
3511696 |
caaacatttaattagatctcaccatttataagatgtttgtatatgttttctaggaaggatataataaattcctcaggt |
3511619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University