View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18589_low_34 (Length: 291)
Name: NF18589_low_34
Description: NF18589
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18589_low_34 |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 23268605 - 23268902
Alignment:
| Q |
1 |
atgcagtagtggcagaaaaggaaggaaaacaatgaaagtaatgtaattgatctcattgttgattaatactctgaatgaaaacaacagaacaaatggtttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23268605 |
atgcagtagtggcagaaaaggaaggaaaacaatgaaagtaatgtaattgatctcattgttgattaatactctgaatgaaaacaacagaacaaatggtttg |
23268704 |
T |
|
| Q |
101 |
ttttgtacagtttcagaaatatgcatatactt------gtggaacaagctaaaagtcttgagagaaatttcgtggaacatgagcata------------- |
181 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23268705 |
ttttgtacagtttcagaaatatgcatatacttgtggaagtggaacaagctaaaagtcttgagagaaatttcgtggaacatgagcatatttttgctatcag |
23268804 |
T |
|
| Q |
182 |
-tgatattaatgatgacttccaagtcttccattatgatgcattaaagttgtccactttccatattaaacattattatctttttgggtcgtccattgtg |
278 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23268805 |
gtgatattaatgatgacttccaagtcttccattatgatgcattaaagttgtccactttccatattaaacattattatctttttgggtcgtccattgtg |
23268902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 9e-33; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 5885332 - 5885205
Alignment:
| Q |
1 |
atgcagtagtggcagaaaaggaaggaaaacaatgaaagtaatgtaattgatctcattgttgattaa-tactctgaatgaaaacaacagaacaaatggttt |
99 |
Q |
| |
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|||||||||| ||||| ||||| ||||||| |||||||||||||||| ||||||||||||| |||| |||||||| ||| ||||||| ||||||||||| |
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| T |
5885332 |
atgcagtagtagcagataaggatggaaaacgatgaaagtaatgtaatcgatctcattgttggttaattactctgagtgacaacaacaacacaaatggttt |
5885233 |
T |
|
| Q |
100 |
gttttgtacagtttcagaaatatgcata |
127 |
Q |
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||||| || ||||||||||||||||||| |
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| T |
5885232 |
gttttataaagtttcagaaatatgcata |
5885205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 13 - 127
Target Start/End: Complemental strand, 5847247 - 5847132
Alignment:
| Q |
13 |
cagaaaaggaaggaaaacaatgaaagtaatgtaattgatctcattgttgattaat-actctgaatgaaaacaacagaacaaatggtttgttttgtacagt |
111 |
Q |
| |
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|||| |||||||||||| |||| |||||||||||| ||||||||||||| ||||| ||||||| ||| |||||||| ||||||||||||| || || ||| |
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| T |
5847247 |
cagataaggaaggaaaagaatgtaagtaatgtaatcgatctcattgttggttaattactctgagtgacaacaacagcacaaatggtttgtgttataaagt |
5847148 |
T |
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| Q |
112 |
ttcagaaatatgcata |
127 |
Q |
| |
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|||||||||||||||| |
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| T |
5847147 |
ttcagaaatatgcata |
5847132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 5852030 - 5851967
Alignment:
| Q |
1 |
atgcagtagtggcagaaaaggaaggaaaacaatgaaagtaatgtaattgatctcattgttgattaat |
67 |
Q |
| |
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|||||||||| ||||| || |||||||||||||| |||||||||||| ||||||||||| ||||| |
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| T |
5852030 |
atgcagtagtagcagagaatgaaggaaaacaatggaagtaatgtaat---tctcattgttgtttaat |
5851967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 5606075 - 5606118
Alignment:
| Q |
18 |
aaggaaggaaaacaatgaaagtaatgtaattgatctcattgttg |
61 |
Q |
| |
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|||||| ||||||| ||||| ||||||||||||||||||||||| |
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| T |
5606075 |
aaggaaagaaaacattgaaactaatgtaattgatctcattgttg |
5606118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 6030719 - 6030672
Alignment:
| Q |
1 |
atgcagtagtggcagaaaaggaaggaaaacaatgaaagtaatgtaatt |
48 |
Q |
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|||||||||| ||| | |||||||||||||||||||||||||| |||| |
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| T |
6030719 |
atgcagtagtagcatagaaggaaggaaaacaatgaaagtaatgcaatt |
6030672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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