View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18589_low_36 (Length: 277)

Name: NF18589_low_36

Description: NF18589

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF18589_low_36

[»] chr5 (2 HSPs)

Target: chr5 (Bit Score: 128; Significance: 3e-66; HSPs: 2)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 128; E-Value: 3e-66

Query Start/End: Original strand, 16 - 207

Target Start/End: Original strand, 36320980 - 36321157

Alignment:

Q	16	atattcttctccaattttattttctgcatttattgttcaagttctttgacatggtgcttattaatttggaacataaagtgtttattgatttgtctgagtc	115	Q
		\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	36320980	atattcttcttcaattttattttctgaatttattgttcaagttcttcgacatggtgcttattaatttggaacataaagtgtttattgatttgtctgagtc	36321079	T

Q	116	aaatctattatctttttcttctgtccagtatcatcaagcaatagaactgaagttgtatttcgaatcaatggaacttgagactagtatgtaat	207	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	36321080	aaatcta-----tttttct---------tatcatcaagcaatagaactgaagttgtatttcgaatcaatggaacttgagactagtatgtaat	36321157	T

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Target: chr5; HSP #2

Raw Score: 40; E-Value: 0.0000000000001

Query Start/End: Original strand, 205 - 260

Target Start/End: Original strand, 36327140 - 36327195

Alignment:

Q	205	aataaggtcagtacacgatttctgtgtggtttgccgacccactgccaacagtaatt	260	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|
T	36327140	aataaggtcagtacatggtttctgtgtggtttaccgacccactgcctacagtaatt	36327195	T

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